Wall clock time and date at job start Tue Mar 31 2020 18:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36591 * 126.57523 * 2 1 4 4 C 1.47527 * 125.77333 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99753 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00125 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00051 * 185.05733 * 6 4 3 8 8 C 1.53001 * 109.47386 * 298.38724 * 7 6 4 9 9 N 1.46497 * 109.47306 * 305.47160 * 8 7 6 10 10 C 1.36928 * 120.00255 * 175.10038 * 9 8 7 11 11 H 1.08003 * 120.00200 * 359.97438 * 10 9 8 12 12 C 1.38819 * 119.99986 * 179.97438 * 10 9 8 13 13 N 1.31609 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99840 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46930 * 89.99673 * 14 12 10 16 16 H 1.48494 * 109.46818 * 210.00140 * 14 12 10 17 17 H 1.48501 * 109.46896 * 329.99793 * 14 12 10 18 18 C 1.53005 * 109.47121 * 178.38822 * 7 6 4 19 19 C 1.52992 * 109.47300 * 300.00160 * 18 7 6 20 20 C 1.53003 * 109.47161 * 299.99799 * 19 18 7 21 21 C 1.53005 * 109.46849 * 59.99925 * 20 19 18 22 22 C 1.52992 * 109.47300 * 299.99990 * 21 20 19 23 23 H 1.08997 * 109.47612 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47248 * 300.00398 * 22 21 20 25 25 N 1.34396 * 108.45960 * 180.26638 * 3 2 1 26 26 N 1.28772 * 109.51954 * 359.58707 * 25 3 2 27 27 N 1.34810 * 126.58083 * 180.02562 * 2 1 3 28 28 C 1.46500 * 126.59470 * 359.93491 * 27 2 1 29 29 H 1.08997 * 109.47177 * 90.00302 * 1 2 3 30 30 H 1.09007 * 109.46325 * 209.99893 * 1 2 3 31 31 H 1.08994 * 109.47172 * 329.99994 * 1 2 3 32 32 H 0.97007 * 120.00074 * 5.05914 * 6 4 3 33 33 H 1.09002 * 109.46812 * 65.46776 * 8 7 6 34 34 H 1.08994 * 109.47319 * 185.46710 * 8 7 6 35 35 H 0.97005 * 119.99380 * 355.09516 * 9 8 7 36 36 H 0.97001 * 120.00343 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.46985 * 180.02562 * 18 7 6 38 38 H 1.08999 * 109.47172 * 60.00138 * 18 7 6 39 39 H 1.08996 * 109.47325 * 59.99684 * 19 18 7 40 40 H 1.08997 * 109.47612 * 179.97438 * 19 18 7 41 41 H 1.08997 * 109.47559 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.47239 * 300.00189 * 20 19 18 43 43 H 1.09004 * 109.46985 * 60.00108 * 21 20 19 44 44 H 1.09003 * 109.46942 * 179.97438 * 21 20 19 45 45 H 1.08994 * 109.47263 * 59.99853 * 24 22 21 46 46 H 1.08998 * 109.47452 * 180.02562 * 24 22 21 47 47 H 1.09007 * 109.46998 * 299.99626 * 24 22 21 48 48 H 1.09001 * 109.46695 * 90.00542 * 28 27 2 49 49 H 1.09002 * 109.47011 * 210.00364 * 28 27 2 50 50 H 1.08999 * 109.47642 * 330.00817 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6858 2.7627 0.0006 6 7 2.7815 3.4988 0.0000 7 6 2.3410 4.8914 0.1123 8 6 1.4515 5.2430 -1.0819 9 7 2.1647 4.9454 -2.3264 10 6 1.5280 5.0852 -3.5306 11 1 0.4999 5.4145 -3.5629 12 6 2.2040 4.8037 -4.7100 13 7 3.4570 4.4029 -4.6707 14 14 1.3357 4.9951 -6.3528 15 1 1.5347 6.3766 -6.8598 16 1 1.8982 4.0248 -7.3260 17 1 -0.1161 4.7361 -6.1784 18 6 3.5623 5.8130 0.1273 19 6 4.4518 5.4616 1.3214 20 6 3.6602 5.6430 2.6180 21 6 2.4389 4.7215 2.6030 22 6 1.5493 5.0729 1.4090 23 1 0.6791 4.4167 1.3985 24 6 1.0893 6.5274 1.5263 25 7 3.5983 0.6790 -0.0059 26 7 3.6299 -0.6083 -0.0009 27 7 2.3105 -1.0825 -0.0005 28 6 1.8865 -2.4848 0.0002 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 3.7267 3.2936 -0.0749 33 1 0.5354 4.6539 -1.0383 34 1 1.2032 6.3038 -1.0501 35 1 3.0880 4.6493 -2.2974 36 1 3.9295 4.2065 -5.4948 37 1 3.2345 6.8492 0.2113 38 1 4.1263 5.6838 -0.7964 39 1 4.7796 4.4254 1.2378 40 1 5.3221 6.1178 1.3318 41 1 4.2937 5.3922 3.4687 42 1 3.3324 6.6793 2.7016 43 1 2.7667 3.6852 2.5194 44 1 1.8751 4.8504 3.5270 45 1 1.9593 7.1839 1.5369 46 1 0.4552 6.7777 0.6758 47 1 0.5252 6.6567 2.4500 48 1 1.7805 -2.8328 -1.0273 49 1 2.6336 -3.0901 0.5136 50 1 0.9298 -2.5750 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698654845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:29 Heat of formation + Delta-G solvation = 61.994120 kcal Electronic energy + Delta-G solvation = -31386.771869 eV Core-core repulsion = 27451.132247 eV Total energy + Delta-G solvation = -3935.639622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12229 -40.37202 -37.73292 -34.93215 -34.60960 -33.10889 -32.27647 -31.86751 -31.09006 -29.44243 -28.08791 -27.47410 -26.28213 -24.93268 -23.37224 -22.77911 -21.86988 -21.27724 -20.48160 -20.04441 -17.99000 -17.74311 -17.01988 -16.35511 -16.06920 -15.41645 -15.28179 -14.58900 -14.35351 -14.29932 -14.07412 -13.82767 -13.66759 -13.37385 -13.22937 -13.12973 -13.02497 -12.81385 -12.58616 -12.56851 -12.28897 -12.13612 -11.86285 -11.80478 -11.37163 -11.32174 -11.06179 -10.99227 -10.85609 -10.73567 -10.66366 -10.16876 -10.15091 -10.03074 -9.94981 -9.80466 -9.53835 -9.20794 -8.95832 -8.67953 -8.31345 -6.72817 -5.63503 -2.89231 1.22918 1.98419 2.07196 3.50121 3.55044 3.56645 3.57656 3.77268 4.30754 4.31553 4.65504 4.69562 4.75660 4.82980 4.98032 4.98306 5.02495 5.05789 5.29284 5.37760 5.43249 5.47690 5.59684 5.62893 5.69311 5.71649 5.78772 5.84240 5.87584 5.89692 5.93344 6.06793 6.09629 6.19207 6.26559 6.31086 6.31760 6.42536 6.45242 6.56291 6.63830 6.65598 6.72857 6.83950 7.04369 7.25925 7.82788 7.95006 8.19527 8.55813 8.73022 9.66831 10.27370 10.62439 11.59626 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.005650 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.860527 B = 4954.480563 C = 7392.327713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.119 3.881 3 C -0.095 4.095 4 C 0.614 3.386 5 O -0.532 6.532 6 N -0.691 5.691 7 C 0.183 3.817 8 C 0.141 3.859 9 N -0.725 5.725 10 C -0.226 4.226 11 H 0.067 0.933 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.902 3.098 15 H -0.291 1.291 16 H -0.294 1.294 17 H -0.284 1.284 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.099 4.099 23 H 0.090 0.910 24 C -0.147 4.147 25 N -0.199 5.199 26 N -0.076 5.076 27 N -0.369 5.369 28 C 0.089 3.911 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.403 0.597 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.382 0.618 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -8.369 17.176 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.019 4.019 3 C -0.234 4.234 4 C 0.398 3.602 5 O -0.409 6.409 6 N -0.341 5.341 7 C 0.097 3.903 8 C 0.013 3.987 9 N -0.369 5.369 10 C -0.358 4.358 11 H 0.085 0.915 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.734 3.266 15 H -0.219 1.219 16 H -0.220 1.220 17 H -0.209 1.209 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.147 4.147 22 C -0.118 4.118 23 H 0.108 0.892 24 C -0.205 4.205 25 N -0.072 5.072 26 N -0.055 5.055 27 N -0.156 5.156 28 C -0.052 4.052 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.239 0.761 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.216 0.784 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.709 -8.576 17.060 19.286 hybrid contribution -0.538 -0.239 -1.245 1.378 sum -3.248 -8.816 15.815 18.395 Atomic orbital electron populations 1.20698 0.84791 1.04914 1.04787 1.21892 0.96183 0.86374 0.97432 1.21393 0.88765 0.95918 1.17367 1.16505 0.85653 0.82076 0.75978 1.90684 1.15988 1.83197 1.51023 1.45647 1.09929 1.05465 1.73025 1.20561 0.94733 0.79808 0.95191 1.21163 0.95154 0.97312 0.85078 1.42242 1.13365 1.81191 1.00108 1.19214 0.95775 1.36635 0.84172 0.91452 1.24669 0.96255 1.02870 0.97434 1.69651 1.09622 1.52915 1.26254 0.86246 0.78597 0.77215 0.84539 1.21892 1.22031 1.20937 1.21820 0.95724 0.99565 0.98843 1.21559 0.97996 1.01599 0.94658 1.21562 0.96724 1.00041 0.97256 1.21503 0.96205 0.99500 0.97527 1.21422 0.99021 0.97919 0.93467 0.89190 1.21952 1.01193 0.95827 1.01500 1.74579 1.19285 1.03940 1.09418 1.81950 0.95900 1.03679 1.23977 1.50211 1.06593 1.07558 1.51194 1.22098 1.02115 0.76406 1.04589 0.88942 0.91176 0.86902 0.76127 0.93413 0.96160 0.78430 0.93799 0.90265 0.90259 0.92048 0.92057 0.92743 0.91803 0.92299 0.92626 0.92261 0.91965 0.93199 0.89407 0.88325 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.57 36.01 0.34 -0.66 16 2 C 0.12 1.67 7.02 -81.88 -0.57 1.10 16 3 C -0.09 -1.63 6.99 -83.55 -0.58 -2.22 16 4 C 0.61 11.31 7.22 -12.48 -0.09 11.22 16 5 O -0.53 -10.38 11.01 5.28 0.06 -10.32 16 6 N -0.69 -12.11 3.50 -48.64 -0.17 -12.28 16 7 C 0.18 3.09 0.09 -131.82 -0.01 3.08 16 8 C 0.14 3.01 4.36 -4.04 -0.02 2.99 16 9 N -0.72 -18.78 5.18 -59.91 -0.31 -19.09 16 10 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 11 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 12 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 13 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 14 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 C -0.12 -1.89 4.37 -26.73 -0.12 -2.00 16 19 C -0.12 -1.54 5.75 -26.73 -0.15 -1.69 16 20 C -0.12 -1.36 5.65 -26.73 -0.15 -1.52 16 21 C -0.11 -1.39 5.29 -26.73 -0.14 -1.53 16 22 C -0.10 -1.44 2.01 -90.62 -0.18 -1.62 16 23 H 0.09 1.48 6.23 -51.93 -0.32 1.16 16 24 C -0.15 -1.92 8.15 37.16 0.30 -1.62 16 25 N -0.20 -3.53 12.04 32.85 0.40 -3.13 16 26 N -0.08 -1.22 13.78 60.35 0.83 -0.38 16 27 N -0.37 -4.67 4.03 -63.59 -0.26 -4.93 16 28 C 0.09 0.60 11.33 59.85 0.68 1.27 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.11 1.38 6.43 -51.93 -0.33 1.05 16 32 H 0.40 6.97 7.07 -40.82 -0.29 6.68 16 33 H 0.05 1.12 6.29 -51.93 -0.33 0.79 16 34 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 35 H 0.38 10.34 6.47 -40.82 -0.26 10.07 16 36 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 37 H 0.08 1.18 6.43 -51.93 -0.33 0.85 16 38 H 0.08 1.43 7.11 -51.93 -0.37 1.06 16 39 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 43 H 0.06 0.81 7.60 -51.93 -0.39 0.41 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.73 4.81 -51.93 -0.25 0.48 16 46 H 0.06 0.88 6.56 -51.93 -0.34 0.54 16 47 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.37 7.16 -51.93 -0.37 0.00 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -35.07 379.32 -6.50 -41.56 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.52 Total: 13.46 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.95 Total: -0.52 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: 1.21 Total: -68.14 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.06 Total: -10.32 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.07 -6.50 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698654845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.559 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds