Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36591 * 126.57523 * 2 1 4 4 C 1.47527 * 125.77333 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99753 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00125 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00051 * 185.05733 * 6 4 3 8 8 C 1.53001 * 109.47386 * 298.38724 * 7 6 4 9 9 N 1.46497 * 109.47306 * 305.47160 * 8 7 6 10 10 C 1.36928 * 120.00255 * 175.10038 * 9 8 7 11 11 H 1.08003 * 120.00200 * 359.97438 * 10 9 8 12 12 C 1.38819 * 119.99986 * 179.97438 * 10 9 8 13 13 N 1.31609 * 120.00210 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99840 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46930 * 89.99673 * 14 12 10 16 16 H 1.48494 * 109.46818 * 210.00140 * 14 12 10 17 17 H 1.48501 * 109.46896 * 329.99793 * 14 12 10 18 18 C 1.53005 * 109.47121 * 178.38822 * 7 6 4 19 19 C 1.52992 * 109.47300 * 300.00160 * 18 7 6 20 20 C 1.53003 * 109.47161 * 299.99799 * 19 18 7 21 21 C 1.53005 * 109.46849 * 59.99925 * 20 19 18 22 22 C 1.52992 * 109.47300 * 299.99990 * 21 20 19 23 23 H 1.08997 * 109.47612 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47248 * 300.00398 * 22 21 20 25 25 N 1.34396 * 108.45960 * 180.26638 * 3 2 1 26 26 N 1.28772 * 109.51954 * 359.58707 * 25 3 2 27 27 N 1.34810 * 126.58083 * 180.02562 * 2 1 3 28 28 C 1.46500 * 126.59470 * 359.93491 * 27 2 1 29 29 H 1.08997 * 109.47177 * 90.00302 * 1 2 3 30 30 H 1.09007 * 109.46325 * 209.99893 * 1 2 3 31 31 H 1.08994 * 109.47172 * 329.99994 * 1 2 3 32 32 H 0.97007 * 120.00074 * 5.05914 * 6 4 3 33 33 H 1.09002 * 109.46812 * 65.46776 * 8 7 6 34 34 H 1.08994 * 109.47319 * 185.46710 * 8 7 6 35 35 H 0.97005 * 119.99380 * 355.09516 * 9 8 7 36 36 H 0.97001 * 120.00343 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.46985 * 180.02562 * 18 7 6 38 38 H 1.08999 * 109.47172 * 60.00138 * 18 7 6 39 39 H 1.08996 * 109.47325 * 59.99684 * 19 18 7 40 40 H 1.08997 * 109.47612 * 179.97438 * 19 18 7 41 41 H 1.08997 * 109.47559 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.47239 * 300.00189 * 20 19 18 43 43 H 1.09004 * 109.46985 * 60.00108 * 21 20 19 44 44 H 1.09003 * 109.46942 * 179.97438 * 21 20 19 45 45 H 1.08994 * 109.47263 * 59.99853 * 24 22 21 46 46 H 1.08998 * 109.47452 * 180.02562 * 24 22 21 47 47 H 1.09007 * 109.46998 * 299.99626 * 24 22 21 48 48 H 1.09001 * 109.46695 * 90.00542 * 28 27 2 49 49 H 1.09002 * 109.47011 * 210.00364 * 28 27 2 50 50 H 1.08999 * 109.47642 * 330.00817 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6858 2.7627 0.0006 6 7 2.7815 3.4988 0.0000 7 6 2.3410 4.8914 0.1123 8 6 1.4515 5.2430 -1.0819 9 7 2.1647 4.9454 -2.3264 10 6 1.5280 5.0852 -3.5306 11 1 0.4999 5.4145 -3.5629 12 6 2.2040 4.8037 -4.7100 13 7 3.4570 4.4029 -4.6707 14 14 1.3357 4.9951 -6.3528 15 1 1.5347 6.3766 -6.8598 16 1 1.8982 4.0248 -7.3260 17 1 -0.1161 4.7361 -6.1784 18 6 3.5623 5.8130 0.1273 19 6 4.4518 5.4616 1.3214 20 6 3.6602 5.6430 2.6180 21 6 2.4389 4.7215 2.6030 22 6 1.5493 5.0729 1.4090 23 1 0.6791 4.4167 1.3985 24 6 1.0893 6.5274 1.5263 25 7 3.5983 0.6790 -0.0059 26 7 3.6299 -0.6083 -0.0009 27 7 2.3105 -1.0825 -0.0005 28 6 1.8865 -2.4848 0.0002 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 3.7267 3.2936 -0.0749 33 1 0.5354 4.6539 -1.0383 34 1 1.2032 6.3038 -1.0501 35 1 3.0880 4.6493 -2.2974 36 1 3.9295 4.2065 -5.4948 37 1 3.2345 6.8492 0.2113 38 1 4.1263 5.6838 -0.7964 39 1 4.7796 4.4254 1.2378 40 1 5.3221 6.1178 1.3318 41 1 4.2937 5.3922 3.4687 42 1 3.3324 6.6793 2.7016 43 1 2.7667 3.6852 2.5194 44 1 1.8751 4.8504 3.5270 45 1 1.9593 7.1839 1.5369 46 1 0.4552 6.7777 0.6758 47 1 0.5252 6.6567 2.4500 48 1 1.7805 -2.8328 -1.0273 49 1 2.6336 -3.0901 0.5136 50 1 0.9298 -2.5750 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698654845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = 37.151657 kcal Electronic energy + Delta-G solvation = -31387.849119 eV Core-core repulsion = 27451.132247 eV Total energy + Delta-G solvation = -3936.716872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.27000 -41.69448 -39.05501 -36.43631 -35.94843 -34.66081 -33.49443 -33.05486 -32.74777 -31.00224 -29.09532 -28.32264 -27.69537 -26.51353 -24.76544 -24.47976 -23.05228 -22.43720 -21.69429 -21.34206 -19.43996 -19.07019 -18.86901 -17.40733 -17.17447 -16.87082 -16.59480 -16.21281 -15.89929 -15.48879 -15.28369 -15.20619 -15.01151 -14.60769 -14.53870 -14.23546 -14.10184 -13.98510 -13.90352 -13.69253 -13.55417 -13.27319 -13.06567 -12.95514 -12.88345 -12.82296 -12.63986 -12.42027 -12.24487 -12.15585 -12.09503 -11.92134 -11.79530 -11.25694 -11.15352 -11.11145 -11.05943 -10.87010 -10.45556 -10.17590 -9.71893 -8.90065 -7.92055 -5.18023 0.13655 0.68183 1.16582 1.43250 1.45457 1.53723 2.23157 2.41389 2.56576 3.22828 3.40355 3.47503 3.64221 3.68575 3.81054 3.85019 3.90843 4.12629 4.26496 4.28662 4.38654 4.41013 4.49003 4.54185 4.59027 4.61215 4.64439 4.69979 4.72246 4.82779 4.85777 4.88581 4.96617 5.03548 5.08505 5.15128 5.19729 5.22060 5.28613 5.30634 5.43356 5.46888 5.49171 5.52894 5.55412 5.63194 5.82708 6.29709 6.59599 6.93778 7.32557 7.36477 8.14749 8.39875 9.31246 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.005650 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.860527 B = 4954.480563 C = 7392.327713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.125 3.875 3 C -0.131 4.131 4 C 0.607 3.393 5 O -0.551 6.551 6 N -0.690 5.690 7 C 0.188 3.812 8 C 0.144 3.856 9 N -0.731 5.731 10 C -0.235 4.235 11 H 0.067 0.933 12 C -0.075 4.075 13 N -0.968 5.968 14 Si 0.968 3.032 15 H -0.284 1.284 16 H -0.297 1.297 17 H -0.274 1.274 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.104 4.104 22 C -0.092 4.092 23 H 0.068 0.932 24 C -0.144 4.144 25 N -0.226 5.226 26 N -0.097 5.097 27 N -0.354 5.354 28 C 0.073 3.927 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.402 0.598 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.114 0.886 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -9.010 18.699 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.014 4.014 3 C -0.271 4.271 4 C 0.392 3.608 5 O -0.429 6.429 6 N -0.339 5.339 7 C 0.102 3.898 8 C 0.017 3.983 9 N -0.374 5.374 10 C -0.367 4.367 11 H 0.085 0.915 12 C -0.267 4.267 13 N -0.619 5.619 14 Si 0.798 3.202 15 H -0.211 1.211 16 H -0.223 1.223 17 H -0.199 1.199 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.112 4.112 23 H 0.087 0.913 24 C -0.201 4.201 25 N -0.098 5.098 26 N -0.077 5.077 27 N -0.140 5.140 28 C -0.066 4.066 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.237 0.763 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.132 0.868 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.724 -9.232 18.614 21.109 hybrid contribution -0.304 -0.142 -1.705 1.738 sum -4.028 -9.374 16.908 19.748 Atomic orbital electron populations 1.20783 0.82383 1.06451 1.05089 1.22324 0.97455 0.85899 0.95725 1.21490 0.89575 0.96178 1.19877 1.16790 0.85534 0.82876 0.75571 1.90659 1.16535 1.83710 1.52033 1.45687 1.09792 1.05668 1.72791 1.20535 0.94900 0.79907 0.94469 1.21225 0.94930 0.96845 0.85308 1.42364 1.13119 1.80980 1.00916 1.19559 0.95846 1.35783 0.85557 0.91529 1.25456 0.97043 1.03323 1.00859 1.69817 1.11044 1.54315 1.26739 0.85205 0.77853 0.77115 0.80033 1.21129 1.22329 1.19899 1.21755 0.95181 0.99621 0.98847 1.21529 0.98133 1.01500 0.94098 1.21545 0.96099 1.00437 0.96852 1.21455 0.96548 0.99002 0.97111 1.21342 0.98247 0.98683 0.92924 0.91334 1.21935 1.01631 0.94627 1.01944 1.74533 1.19965 1.04847 1.10484 1.81814 0.97993 1.03170 1.24694 1.50572 1.05189 1.09290 1.48960 1.22707 1.04316 0.73207 1.06352 0.88998 0.86441 0.88556 0.76276 0.95655 0.95794 0.79403 0.94287 0.89437 0.93442 0.92804 0.90434 0.90775 0.90438 0.93736 0.90682 0.91081 0.93656 0.90927 0.87965 0.86751 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.57 71.24 0.68 -1.10 16 2 C 0.13 3.46 7.02 41.72 0.29 3.76 16 3 C -0.13 -4.66 6.99 40.82 0.29 -4.37 16 4 C 0.61 23.42 7.22 86.69 0.63 24.05 16 5 O -0.55 -22.46 11.01 -4.04 -0.04 -22.51 16 6 N -0.69 -25.40 3.50 -426.04 -1.49 -26.90 16 7 C 0.19 6.52 0.09 3.61 0.00 6.52 16 8 C 0.14 6.39 4.36 86.38 0.38 6.77 16 9 N -0.73 -39.40 5.18 -343.46 -1.78 -41.18 16 10 C -0.24 -13.98 9.99 84.04 0.84 -13.14 16 11 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 12 C -0.07 -4.51 5.50 84.87 0.47 -4.04 16 13 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 14 Si 0.97 48.53 29.55 68.60 2.03 50.56 16 15 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 16 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 17 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 18 C -0.12 -3.65 4.37 30.59 0.13 -3.51 16 19 C -0.12 -2.83 5.75 30.59 0.18 -2.65 16 20 C -0.11 -2.30 5.65 30.60 0.17 -2.13 16 21 C -0.10 -2.47 5.29 30.59 0.16 -2.31 16 22 C -0.09 -2.67 2.01 -10.80 -0.02 -2.69 16 23 H 0.07 2.31 6.23 -2.39 -0.01 2.29 16 24 C -0.14 -3.56 8.15 71.98 0.59 -2.98 16 25 N -0.23 -8.28 12.04 -50.00 -0.60 -8.89 16 26 N -0.10 -3.14 13.78 37.02 0.51 -2.63 16 27 N -0.35 -8.49 4.03 -355.09 -1.43 -9.92 16 28 C 0.07 0.75 11.33 127.77 1.45 2.20 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.12 1.19 7.18 -2.38 -0.02 1.18 16 31 H 0.10 2.34 6.43 -2.39 -0.02 2.32 16 32 H 0.40 14.81 7.07 -92.70 -0.66 14.16 16 33 H 0.03 1.25 6.29 -2.39 -0.02 1.23 16 34 H 0.02 1.06 6.74 -2.39 -0.02 1.04 16 35 H 0.37 21.21 6.47 -92.70 -0.60 20.61 16 36 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.09 2.56 6.43 -2.39 -0.02 2.55 16 38 H 0.05 1.79 7.11 -2.39 -0.02 1.77 16 39 H 0.05 1.41 6.89 -2.39 -0.02 1.40 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.42 6.43 -2.39 -0.02 1.41 16 43 H 0.04 1.20 7.60 -2.39 -0.02 1.18 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.59 4.81 -2.39 -0.01 1.58 16 46 H 0.04 1.26 6.56 -2.39 -0.02 1.25 16 47 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.13 0.44 7.16 -2.39 -0.02 0.42 16 Total: -1.00 -79.42 379.32 3.43 -75.99 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: -0.27 Total: 42.56 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.23 Total: 4.36 kcal Atomic # 7 Polarization: -146.44 SS G_CDS: -4.51 Total: -150.96 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.51 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -79.42 3.43 -75.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698654845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.139 kcal (2) G-P(sol) polarization free energy of solvation -79.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds