Wall clock time and date at job start Tue Mar 31 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36586 * 126.58120 * 2 1 4 4 C 1.47531 * 125.76947 * 359.97438 * 3 2 1 5 5 O 1.21587 * 120.00177 * 354.82007 * 4 3 2 6 6 N 1.34782 * 119.99680 * 174.82045 * 4 3 2 7 7 C 1.46497 * 119.99506 * 185.48513 * 6 4 3 8 8 C 1.53004 * 109.47324 * 295.88403 * 7 6 4 9 9 N 1.46497 * 109.47418 * 184.83375 * 8 7 6 10 10 C 1.36934 * 120.00113 * 184.89090 * 9 8 7 11 11 H 1.08004 * 119.99675 * 4.99986 * 10 9 8 12 12 C 1.38815 * 120.00324 * 184.99841 * 10 9 8 13 13 N 1.31609 * 119.99938 * 184.92722 * 12 10 9 14 14 Si 1.86801 * 119.99565 * 4.92090 * 12 10 9 15 15 H 1.48504 * 109.46829 * 94.80569 * 14 12 10 16 16 H 1.48498 * 109.47114 * 214.80469 * 14 12 10 17 17 H 1.48499 * 109.47485 * 334.80960 * 14 12 10 18 18 C 1.52996 * 109.47367 * 55.88689 * 7 6 4 19 19 C 1.53002 * 109.47215 * 60.00148 * 18 7 6 20 20 C 1.52997 * 109.47099 * 59.99908 * 19 18 7 21 21 C 1.53009 * 109.47007 * 299.99968 * 20 19 18 22 22 C 1.52996 * 109.46859 * 60.00623 * 21 20 19 23 23 H 1.08992 * 109.47611 * 59.99495 * 22 21 20 24 24 C 1.53004 * 109.47117 * 179.97438 * 22 21 20 25 25 N 1.34398 * 108.46243 * 180.26248 * 3 2 1 26 26 N 1.28763 * 109.51847 * 359.58678 * 25 3 2 27 27 N 1.34811 * 126.57868 * 180.02562 * 2 1 3 28 28 C 1.46499 * 126.59562 * 359.94532 * 27 2 1 29 29 H 1.08994 * 109.47322 * 94.75929 * 1 2 3 30 30 H 1.09004 * 109.46973 * 214.75767 * 1 2 3 31 31 H 1.09004 * 109.47114 * 334.75356 * 1 2 3 32 32 H 0.96995 * 119.99953 * 5.47880 * 6 4 3 33 33 H 1.08996 * 109.47167 * 304.84281 * 8 7 6 34 34 H 1.09008 * 109.46694 * 64.83785 * 8 7 6 35 35 H 0.97002 * 119.99773 * 4.90350 * 9 8 7 36 36 H 0.97001 * 119.99882 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47193 * 299.99568 * 18 7 6 38 38 H 1.09005 * 109.47063 * 179.97438 * 18 7 6 39 39 H 1.08992 * 109.47224 * 179.97438 * 19 18 7 40 40 H 1.09005 * 109.46859 * 299.99824 * 19 18 7 41 41 H 1.08995 * 109.47522 * 60.00217 * 20 19 18 42 42 H 1.08997 * 109.47009 * 180.02562 * 20 19 18 43 43 H 1.08997 * 109.46784 * 180.02562 * 21 20 19 44 44 H 1.08992 * 109.47421 * 300.00001 * 21 20 19 45 45 H 1.09005 * 109.46958 * 59.99687 * 24 22 21 46 46 H 1.09001 * 109.46902 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47089 * 300.00094 * 24 22 21 48 48 H 1.08998 * 109.47293 * 89.99916 * 28 27 2 49 49 H 1.08999 * 109.47379 * 209.99694 * 28 27 2 50 50 H 1.09006 * 109.47233 * 329.99756 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6902 2.7640 -0.0961 6 7 2.7772 3.4973 0.1049 7 6 2.3268 4.8861 0.2254 8 6 1.5910 5.2963 -1.0518 9 7 1.2418 6.7172 -0.9793 10 6 0.4872 7.2882 -1.9691 11 1 0.0818 6.6753 -2.7606 12 6 0.2433 8.6547 -1.9552 13 7 -0.5605 9.1888 -2.8500 14 14 1.0561 9.7353 -0.6664 15 1 2.3031 10.3181 -1.2240 16 1 0.1282 10.8286 -0.2805 17 1 1.3834 8.9184 0.5297 18 6 1.3818 5.0138 1.4218 19 6 2.1176 4.6037 2.6990 20 6 3.3281 5.5163 2.9056 21 6 4.2732 5.3885 1.7091 22 6 3.5374 5.7987 0.4320 23 1 3.2023 6.8320 0.5216 24 6 4.4826 5.6716 -0.7644 25 7 3.5984 0.6788 -0.0058 26 7 3.6299 -0.6084 -0.0007 27 7 2.3104 -1.0826 -0.0005 28 6 1.8864 -2.4849 0.0000 29 1 -0.3633 -0.0853 -1.0241 30 1 -0.3633 -0.8443 0.5859 31 1 -0.3633 0.9295 0.4383 32 1 3.7255 3.2935 0.1011 33 1 2.2356 5.1240 -1.9137 34 1 0.6819 4.7035 -1.1537 35 1 1.5452 7.2536 -0.2302 36 1 -0.7306 10.1437 -2.8405 37 1 0.5193 4.3637 1.2746 38 1 1.0470 6.0473 1.5117 39 1 1.4445 4.6951 3.5514 40 1 2.4527 3.5703 2.6094 41 1 2.9931 6.5496 2.9953 42 1 3.8525 5.2238 3.8153 43 1 5.1358 6.0383 1.8565 44 1 4.6083 4.3553 1.6195 45 1 4.8180 4.6383 -0.8542 46 1 3.9582 5.9634 -1.6743 47 1 5.3448 6.3219 -0.6170 48 1 1.7804 -2.8328 -1.0275 49 1 2.6335 -3.0902 0.5133 50 1 0.9297 -2.5750 0.5146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698654846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:33 Heat of formation + Delta-G solvation = 65.903011 kcal Electronic energy + Delta-G solvation = -31121.583449 eV Core-core repulsion = 27186.113329 eV Total energy + Delta-G solvation = -3935.470119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.42504 -40.52681 -37.94483 -35.19594 -34.65682 -33.51099 -32.51526 -32.30223 -31.41291 -29.63106 -28.14203 -27.71090 -26.52448 -25.08851 -23.78052 -22.38340 -21.78640 -21.28294 -20.67064 -20.42562 -18.48582 -18.18367 -17.62255 -16.64131 -16.25465 -15.40658 -14.93710 -14.76205 -14.56343 -14.35198 -14.18737 -13.98840 -13.91766 -13.79695 -13.56616 -13.31013 -13.28366 -13.18610 -12.81242 -12.64925 -12.49282 -12.10230 -11.84384 -11.71018 -11.64004 -11.40835 -11.34709 -11.16531 -11.06386 -10.81126 -10.63627 -10.44328 -10.38687 -10.11396 -10.06448 -9.91825 -9.49537 -9.36763 -9.24759 -8.76524 -8.61439 -7.08590 -5.67944 -3.01503 0.94406 1.65459 1.79719 3.27745 3.38811 3.40102 3.44397 3.50228 4.03205 4.08865 4.39113 4.54584 4.60699 4.66056 4.81148 4.84555 4.90035 4.93702 5.04707 5.23423 5.27165 5.35618 5.45298 5.51894 5.57870 5.61987 5.64369 5.67276 5.76540 5.77997 5.81435 5.86301 5.99006 6.05552 6.14087 6.19000 6.27276 6.30591 6.39231 6.45712 6.47299 6.56821 6.71359 6.83316 6.87564 7.07489 7.64539 7.88437 8.11733 8.40157 8.51473 9.32013 10.03887 10.24902 11.50985 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003655 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.154028 B = 7659.123703 C = 8503.329081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.122 3.878 3 C -0.101 4.101 4 C 0.603 3.397 5 O -0.522 6.522 6 N -0.699 5.699 7 C 0.179 3.821 8 C 0.149 3.851 9 N -0.751 5.751 10 C -0.233 4.233 11 H 0.089 0.911 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.883 3.117 15 H -0.286 1.286 16 H -0.292 1.292 17 H -0.279 1.279 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.092 4.092 23 H 0.088 0.912 24 C -0.150 4.150 25 N -0.204 5.204 26 N -0.073 5.073 27 N -0.367 5.367 28 C 0.088 3.912 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.403 0.597 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.361 0.639 36 H 0.258 0.742 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 -22.515 11.039 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 C -0.241 4.241 4 C 0.387 3.613 5 O -0.397 6.397 6 N -0.350 5.350 7 C 0.094 3.906 8 C 0.022 3.978 9 N -0.398 5.398 10 C -0.363 4.363 11 H 0.106 0.894 12 C -0.193 4.193 13 N -0.585 5.585 14 Si 0.714 3.286 15 H -0.212 1.212 16 H -0.219 1.219 17 H -0.205 1.205 18 C -0.166 4.166 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.111 4.111 23 H 0.106 0.894 24 C -0.208 4.208 25 N -0.077 5.077 26 N -0.053 5.053 27 N -0.154 5.154 28 C -0.053 4.053 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.240 0.760 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.196 0.804 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.107 0.893 49 H 0.118 0.882 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.887 -22.727 10.777 26.361 hybrid contribution 0.062 0.755 0.817 1.114 sum 7.948 -21.973 11.594 26.084 Atomic orbital electron populations 1.20761 0.84539 1.05887 1.04434 1.21953 0.96305 0.86284 0.96976 1.21381 0.88841 0.95794 1.18069 1.16675 0.85816 0.82180 0.76643 1.90770 1.16151 1.82966 1.49859 1.45851 1.09699 1.06011 1.73457 1.20569 0.94128 0.79168 0.96763 1.21034 0.97613 0.86507 0.92688 1.42766 1.64820 1.05585 1.26662 1.19053 1.22714 0.91636 1.02911 0.89357 1.24651 0.99992 0.96427 0.98198 1.69707 1.40042 1.11408 1.37303 0.86563 0.79276 0.80902 0.81857 1.21242 1.21868 1.20514 1.21929 0.98866 1.03352 0.92485 1.21500 0.96791 0.99162 0.97829 1.21550 0.96476 1.00251 0.97477 1.21623 0.97939 1.01263 0.94397 1.21368 0.94594 1.00207 0.94969 0.89383 1.21887 0.98977 1.00937 0.98952 1.74577 1.19250 1.04105 1.09767 1.81965 0.96008 1.03531 1.23776 1.50248 1.06509 1.07727 1.50867 1.22143 1.02346 0.76149 1.04686 0.88930 0.90814 0.86596 0.76029 0.95736 0.92868 0.80429 0.93219 0.89427 0.90607 0.92472 0.92527 0.91939 0.92506 0.91934 0.92108 0.93190 0.90793 0.92788 0.89278 0.88190 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.60 36.01 0.35 -0.45 16 2 C 0.12 1.32 7.02 -81.88 -0.57 0.75 16 3 C -0.10 -1.37 6.99 -83.55 -0.58 -1.95 16 4 C 0.60 9.14 7.16 -12.47 -0.09 9.05 16 5 O -0.52 -8.98 10.97 5.29 0.06 -8.92 16 6 N -0.70 -10.10 3.73 -48.64 -0.18 -10.28 16 7 C 0.18 2.92 0.11 -131.82 -0.01 2.90 16 8 C 0.15 3.09 4.57 -4.04 -0.02 3.08 16 9 N -0.75 -18.08 4.79 -59.91 -0.29 -18.36 16 10 C -0.23 -6.73 10.47 -15.06 -0.16 -6.89 16 11 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 12 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 13 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 14 Si 0.88 22.40 28.02 -169.99 -4.76 17.64 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 17 H -0.28 -6.53 6.14 56.52 0.35 -6.18 16 18 C -0.13 -2.10 4.33 -26.73 -0.12 -2.21 16 19 C -0.12 -1.54 5.77 -26.73 -0.15 -1.70 16 20 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 21 C -0.11 -1.41 5.03 -26.73 -0.13 -1.54 16 22 C -0.09 -1.38 1.78 -90.62 -0.16 -1.54 16 23 H 0.09 1.51 6.50 -51.93 -0.34 1.17 16 24 C -0.15 -2.15 8.67 37.16 0.32 -1.82 16 25 N -0.20 -2.82 12.05 32.85 0.40 -2.42 16 26 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 27 N -0.37 -3.48 4.03 -63.59 -0.26 -3.73 16 28 C 0.09 0.35 11.33 59.85 0.68 1.03 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.36 7.33 -51.93 -0.38 -0.02 16 31 H 0.12 1.19 6.29 -51.93 -0.33 0.87 16 32 H 0.40 5.31 5.88 -40.82 -0.24 5.07 16 33 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 34 H 0.05 1.22 6.42 -51.92 -0.33 0.89 16 35 H 0.36 8.43 3.12 -40.82 -0.13 8.30 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.09 1.56 6.06 -51.93 -0.31 1.25 16 38 H 0.08 1.37 7.28 -51.93 -0.38 0.99 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.75 7.55 -51.93 -0.39 0.36 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.70 6.95 -51.93 -0.36 0.34 16 45 H 0.05 0.63 6.78 -51.93 -0.35 0.28 16 46 H 0.07 1.24 6.54 -51.93 -0.34 0.90 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.10 0.16 7.26 -51.93 -0.38 -0.22 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -34.87 378.10 -6.24 -41.12 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.60 Total: 11.46 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.91 Total: -2.96 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 1.28 Total: -64.04 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.76 Total: 17.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.87 -6.24 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698654846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.019 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds