Wall clock time and date at job start Tue Mar 31 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36586 * 126.58120 * 2 1 4 4 C 1.47531 * 125.76947 * 359.97438 * 3 2 1 5 5 O 1.21587 * 120.00177 * 354.82007 * 4 3 2 6 6 N 1.34782 * 119.99680 * 174.82045 * 4 3 2 7 7 C 1.46497 * 119.99506 * 185.48513 * 6 4 3 8 8 C 1.53004 * 109.47324 * 295.88403 * 7 6 4 9 9 N 1.46497 * 109.47418 * 184.83375 * 8 7 6 10 10 C 1.36934 * 120.00113 * 184.89090 * 9 8 7 11 11 H 1.08004 * 119.99675 * 4.99986 * 10 9 8 12 12 C 1.38815 * 120.00324 * 184.99841 * 10 9 8 13 13 N 1.31609 * 119.99938 * 184.92722 * 12 10 9 14 14 Si 1.86801 * 119.99565 * 4.92090 * 12 10 9 15 15 H 1.48504 * 109.46829 * 94.80569 * 14 12 10 16 16 H 1.48498 * 109.47114 * 214.80469 * 14 12 10 17 17 H 1.48499 * 109.47485 * 334.80960 * 14 12 10 18 18 C 1.52996 * 109.47367 * 55.88689 * 7 6 4 19 19 C 1.53002 * 109.47215 * 60.00148 * 18 7 6 20 20 C 1.52997 * 109.47099 * 59.99908 * 19 18 7 21 21 C 1.53009 * 109.47007 * 299.99968 * 20 19 18 22 22 C 1.52996 * 109.46859 * 60.00623 * 21 20 19 23 23 H 1.08992 * 109.47611 * 59.99495 * 22 21 20 24 24 C 1.53004 * 109.47117 * 179.97438 * 22 21 20 25 25 N 1.34398 * 108.46243 * 180.26248 * 3 2 1 26 26 N 1.28763 * 109.51847 * 359.58678 * 25 3 2 27 27 N 1.34811 * 126.57868 * 180.02562 * 2 1 3 28 28 C 1.46499 * 126.59562 * 359.94532 * 27 2 1 29 29 H 1.08994 * 109.47322 * 94.75929 * 1 2 3 30 30 H 1.09004 * 109.46973 * 214.75767 * 1 2 3 31 31 H 1.09004 * 109.47114 * 334.75356 * 1 2 3 32 32 H 0.96995 * 119.99953 * 5.47880 * 6 4 3 33 33 H 1.08996 * 109.47167 * 304.84281 * 8 7 6 34 34 H 1.09008 * 109.46694 * 64.83785 * 8 7 6 35 35 H 0.97002 * 119.99773 * 4.90350 * 9 8 7 36 36 H 0.97001 * 119.99882 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.47193 * 299.99568 * 18 7 6 38 38 H 1.09005 * 109.47063 * 179.97438 * 18 7 6 39 39 H 1.08992 * 109.47224 * 179.97438 * 19 18 7 40 40 H 1.09005 * 109.46859 * 299.99824 * 19 18 7 41 41 H 1.08995 * 109.47522 * 60.00217 * 20 19 18 42 42 H 1.08997 * 109.47009 * 180.02562 * 20 19 18 43 43 H 1.08997 * 109.46784 * 180.02562 * 21 20 19 44 44 H 1.08992 * 109.47421 * 300.00001 * 21 20 19 45 45 H 1.09005 * 109.46958 * 59.99687 * 24 22 21 46 46 H 1.09001 * 109.46902 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47089 * 300.00094 * 24 22 21 48 48 H 1.08998 * 109.47293 * 89.99916 * 28 27 2 49 49 H 1.08999 * 109.47379 * 209.99694 * 28 27 2 50 50 H 1.09006 * 109.47233 * 329.99756 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6902 2.7640 -0.0961 6 7 2.7772 3.4973 0.1049 7 6 2.3268 4.8861 0.2254 8 6 1.5910 5.2963 -1.0518 9 7 1.2418 6.7172 -0.9793 10 6 0.4872 7.2882 -1.9691 11 1 0.0818 6.6753 -2.7606 12 6 0.2433 8.6547 -1.9552 13 7 -0.5605 9.1888 -2.8500 14 14 1.0561 9.7353 -0.6664 15 1 2.3031 10.3181 -1.2240 16 1 0.1282 10.8286 -0.2805 17 1 1.3834 8.9184 0.5297 18 6 1.3818 5.0138 1.4218 19 6 2.1176 4.6037 2.6990 20 6 3.3281 5.5163 2.9056 21 6 4.2732 5.3885 1.7091 22 6 3.5374 5.7987 0.4320 23 1 3.2023 6.8320 0.5216 24 6 4.4826 5.6716 -0.7644 25 7 3.5984 0.6788 -0.0058 26 7 3.6299 -0.6084 -0.0007 27 7 2.3104 -1.0826 -0.0005 28 6 1.8864 -2.4849 0.0000 29 1 -0.3633 -0.0853 -1.0241 30 1 -0.3633 -0.8443 0.5859 31 1 -0.3633 0.9295 0.4383 32 1 3.7255 3.2935 0.1011 33 1 2.2356 5.1240 -1.9137 34 1 0.6819 4.7035 -1.1537 35 1 1.5452 7.2536 -0.2302 36 1 -0.7306 10.1437 -2.8405 37 1 0.5193 4.3637 1.2746 38 1 1.0470 6.0473 1.5117 39 1 1.4445 4.6951 3.5514 40 1 2.4527 3.5703 2.6094 41 1 2.9931 6.5496 2.9953 42 1 3.8525 5.2238 3.8153 43 1 5.1358 6.0383 1.8565 44 1 4.6083 4.3553 1.6195 45 1 4.8180 4.6383 -0.8542 46 1 3.9582 5.9634 -1.6743 47 1 5.3448 6.3219 -0.6170 48 1 1.7804 -2.8328 -1.0275 49 1 2.6335 -3.0902 0.5133 50 1 0.9297 -2.5750 0.5146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698654846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:32 Heat of formation + Delta-G solvation = 41.037255 kcal Electronic energy + Delta-G solvation = -31122.661709 eV Core-core repulsion = 27186.113329 eV Total energy + Delta-G solvation = -3936.548379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.30967 -41.77945 -39.16376 -36.48460 -35.96178 -34.80532 -33.64911 -33.45071 -33.17086 -31.08042 -28.96662 -28.32386 -27.94532 -26.56273 -24.95880 -24.09350 -23.09672 -22.15169 -21.85543 -21.48483 -19.77357 -19.75533 -19.18616 -17.44759 -17.10621 -16.69667 -16.40521 -16.34890 -15.79977 -15.50223 -15.37676 -15.25213 -15.05307 -15.01818 -14.83139 -14.44885 -14.17056 -14.09135 -13.97688 -13.77827 -13.47251 -13.27796 -13.18038 -13.00681 -12.93963 -12.81840 -12.78153 -12.52812 -12.33529 -12.18820 -12.06391 -11.87352 -11.78644 -11.44938 -11.21799 -11.19725 -11.13006 -10.89687 -10.56134 -10.23989 -9.89211 -9.24544 -8.01448 -5.34176 0.11804 0.62274 1.13216 1.35166 1.41195 1.47642 2.11966 2.25526 2.48673 3.17183 3.29098 3.41788 3.60321 3.63233 3.74671 3.76513 3.77536 3.87388 4.13285 4.19413 4.30896 4.38348 4.43708 4.48277 4.52538 4.59561 4.60727 4.66304 4.68016 4.70277 4.85611 4.87989 4.91753 4.97762 5.07970 5.09460 5.13022 5.18385 5.22293 5.27775 5.33161 5.39535 5.48438 5.51405 5.52543 5.65638 5.77572 6.22084 6.52115 6.90806 7.08636 7.23535 7.83499 8.06917 9.20745 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.003655 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.154028 B = 7659.123703 C = 8503.329081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.130 3.870 3 C -0.129 4.129 4 C 0.602 3.398 5 O -0.549 6.549 6 N -0.690 5.690 7 C 0.191 3.809 8 C 0.153 3.847 9 N -0.744 5.744 10 C -0.230 4.230 11 H 0.047 0.953 12 C -0.062 4.062 13 N -0.985 5.985 14 Si 0.955 3.045 15 H -0.277 1.277 16 H -0.293 1.293 17 H -0.249 1.249 18 C -0.125 4.125 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.092 4.092 23 H 0.069 0.931 24 C -0.147 4.147 25 N -0.221 5.221 26 N -0.092 5.092 27 N -0.353 5.353 28 C 0.073 3.927 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.412 0.588 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.368 0.632 36 H 0.258 0.742 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 -24.303 13.767 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.269 4.269 4 C 0.387 3.613 5 O -0.426 6.426 6 N -0.343 5.343 7 C 0.104 3.896 8 C 0.026 3.974 9 N -0.392 5.392 10 C -0.361 4.361 11 H 0.065 0.935 12 C -0.253 4.253 13 N -0.635 5.635 14 Si 0.782 3.218 15 H -0.203 1.203 16 H -0.220 1.220 17 H -0.174 1.174 18 C -0.164 4.164 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.111 4.111 23 H 0.087 0.913 24 C -0.205 4.205 25 N -0.094 5.094 26 N -0.071 5.071 27 N -0.139 5.139 28 C -0.066 4.066 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.250 0.750 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.204 0.796 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.124 0.876 49 H 0.131 0.869 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.829 -24.592 13.527 29.738 hybrid contribution -0.646 1.107 -0.156 1.291 sum 9.183 -23.485 13.371 28.542 Atomic orbital electron populations 1.20821 0.82690 1.06357 1.05407 1.22275 0.97293 0.85969 0.95420 1.21250 0.89660 0.95402 1.20580 1.16956 0.85442 0.83077 0.75831 1.90764 1.17280 1.83586 1.51011 1.45693 1.10090 1.05067 1.73401 1.20273 0.94604 0.80584 0.94093 1.21021 0.96765 0.84291 0.95314 1.42619 1.64061 1.06915 1.25636 1.18963 1.22652 0.91646 1.02878 0.93516 1.25491 1.00820 0.97878 1.01109 1.69898 1.41941 1.11783 1.39905 0.85407 0.78053 0.78578 0.79787 1.20307 1.22008 1.17370 1.21848 0.98619 1.01631 0.94285 1.21437 0.97312 0.99556 0.96147 1.21565 0.95898 0.99615 0.98519 1.21599 0.98110 1.02335 0.92471 1.21357 0.94140 0.98551 0.97031 0.91310 1.21853 0.99116 1.02374 0.97122 1.74531 1.19518 1.04827 1.10500 1.81858 0.97819 1.03104 1.24342 1.50570 1.05219 1.09267 1.48838 1.22708 1.04178 0.73207 1.06522 0.88152 0.86807 0.88993 0.75008 0.96617 0.95662 0.79585 0.93301 0.91565 0.92548 0.91516 0.92253 0.92402 0.89971 0.89901 0.90978 0.91618 0.94049 0.90798 0.87554 0.86862 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.60 71.24 0.68 -0.69 16 2 C 0.13 2.62 7.02 41.72 0.29 2.92 16 3 C -0.13 -3.44 6.99 40.82 0.29 -3.15 16 4 C 0.60 18.60 7.16 86.69 0.62 19.22 16 5 O -0.55 -19.77 10.97 -3.99 -0.04 -19.82 16 6 N -0.69 -19.95 3.73 -426.04 -1.59 -21.54 16 7 C 0.19 6.26 0.11 3.61 0.00 6.26 16 8 C 0.15 6.67 4.57 86.38 0.39 7.07 16 9 N -0.74 -36.97 4.79 -343.44 -1.65 -38.61 16 10 C -0.23 -13.93 10.47 84.03 0.88 -13.05 16 11 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 12 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 13 N -0.98 -65.18 13.97 21.65 0.30 -64.88 16 14 Si 0.95 46.62 28.02 68.60 1.92 48.54 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 17 H -0.25 -10.81 6.14 99.48 0.61 -10.20 16 18 C -0.13 -4.12 4.33 30.59 0.13 -3.99 16 19 C -0.11 -2.67 5.77 30.59 0.18 -2.50 16 20 C -0.12 -2.54 5.92 30.60 0.18 -2.36 16 21 C -0.11 -2.30 5.03 30.60 0.15 -2.15 16 22 C -0.09 -2.62 1.78 -10.79 -0.02 -2.64 16 23 H 0.07 2.25 6.50 -2.39 -0.02 2.24 16 24 C -0.15 -4.03 8.67 71.98 0.62 -3.41 16 25 N -0.22 -5.94 12.05 -50.00 -0.60 -6.55 16 26 N -0.09 -2.18 13.78 37.02 0.51 -1.67 16 27 N -0.35 -5.90 4.03 -355.10 -1.43 -7.33 16 28 C 0.07 0.32 11.33 127.77 1.45 1.77 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 0.71 7.33 -2.39 -0.02 0.69 16 31 H 0.09 1.88 6.29 -2.38 -0.02 1.87 16 32 H 0.41 10.49 5.88 -92.71 -0.55 9.94 16 33 H 0.02 0.72 6.70 -2.39 -0.02 0.70 16 34 H 0.03 1.25 6.42 -2.38 -0.02 1.23 16 35 H 0.37 17.20 3.12 -92.71 -0.29 16.91 16 36 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 37 H 0.07 2.45 6.06 -2.39 -0.01 2.44 16 38 H 0.06 2.04 7.28 -2.38 -0.02 2.03 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.47 7.55 -2.38 -0.02 1.45 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.41 6.95 -2.39 -0.02 1.40 16 45 H 0.06 1.56 6.78 -2.38 -0.02 1.54 16 46 H 0.04 1.39 6.54 -2.39 -0.02 1.38 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 49 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.13 -0.15 7.26 -2.38 -0.02 -0.17 16 Total: -1.00 -80.67 378.10 3.79 -76.88 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.05 Total: 34.98 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 6.32 Total: -0.02 kcal Atomic # 7 Polarization: -136.12 SS G_CDS: -4.46 Total: -140.57 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.04 Total: -19.82 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.92 Total: 48.54 kcal Total: -80.67 3.79 -76.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698654846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.919 kcal (2) G-P(sol) polarization free energy of solvation -80.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds