Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47046 * 304.99570 * 5 4 3 7 7 C 1.52999 * 109.46811 * 184.99727 * 5 4 3 8 8 N 1.46501 * 109.47016 * 185.00166 * 7 5 4 9 9 C 1.36941 * 119.99965 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00222 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99947 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47037 * 60.00108 * 13 11 9 15 15 H 1.48500 * 109.47464 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47194 * 300.00545 * 13 11 9 17 17 N 1.46496 * 109.47070 * 64.99833 * 5 4 3 18 18 C 1.34776 * 120.00212 * 274.99432 * 17 5 4 19 19 O 1.21288 * 119.99777 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00244 * 180.02562 * 18 17 5 21 21 H 1.09000 * 109.44784 * 300.00281 * 20 18 17 22 22 C 1.53139 * 109.44995 * 180.02562 * 20 18 17 23 23 C 1.53471 * 109.29868 * 170.51760 * 22 20 18 24 24 C 1.50796 * 108.12137 * 48.74972 * 23 22 20 25 25 N 1.29833 * 128.52979 * 164.02078 * 24 23 22 26 26 N 1.28904 * 109.48150 * 180.14942 * 25 24 23 27 27 C 1.30828 * 109.74262 * 359.97438 * 26 25 24 28 28 N 1.34695 * 107.07335 * 359.96962 * 27 26 25 29 29 C 1.46254 * 128.85020 * 180.10753 * 28 27 26 30 30 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 32 32 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 33 33 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 35 35 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 36 36 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 37 37 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 38 38 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 39 39 H 1.09003 * 109.47143 * 304.99714 * 7 5 4 40 40 H 1.08996 * 109.47220 * 65.00125 * 7 5 4 41 41 H 0.96993 * 119.99952 * 359.97438 * 8 7 5 42 42 H 0.97005 * 120.00340 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99885 * 94.99899 * 17 5 4 44 44 H 1.09005 * 109.49774 * 290.48190 * 22 20 18 45 45 H 1.08998 * 109.50279 * 50.58958 * 22 20 18 46 46 H 1.09001 * 109.74255 * 289.08758 * 23 22 20 47 47 H 1.09007 * 109.72740 * 168.40196 * 23 22 20 48 48 H 1.08002 * 126.46860 * 180.02562 * 27 26 25 49 49 H 1.08994 * 109.59775 * 43.15747 * 29 28 27 50 50 H 1.09007 * 109.71940 * 282.77880 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0059 9 6 7.4470 4.5094 -0.0884 10 1 8.1395 3.6950 -0.2419 11 6 7.9190 5.8098 0.0251 12 7 7.0752 6.8022 0.2127 13 14 9.7522 6.1510 -0.0867 14 1 10.2602 5.6990 -1.4069 15 1 9.9947 7.6082 0.0649 16 1 10.4592 5.4170 0.9934 17 7 3.6930 3.5392 1.2523 18 6 2.4758 4.1061 1.3683 19 8 1.7007 4.0743 0.4359 20 6 2.0778 4.7796 2.6564 21 1 2.1096 4.0548 3.4698 22 6 0.6572 5.3357 2.5232 23 6 0.1662 5.8074 3.8987 24 6 1.2411 6.6705 4.5098 25 7 1.1469 7.4924 5.5104 26 7 2.2925 8.0435 5.7235 27 6 3.1674 7.5915 4.8621 28 7 2.5252 6.7098 4.0719 29 6 3.0518 5.9250 2.9558 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8891 39 1 6.0357 2.2731 0.6649 40 1 5.8895 2.4807 -1.0969 41 1 5.4812 4.9906 0.1316 42 1 7.4051 7.7110 0.2924 43 1 4.3128 3.5644 1.9981 44 1 0.6591 6.1764 1.8294 45 1 -0.0054 4.5555 2.1486 46 1 -0.0212 4.9450 4.5384 47 1 -0.7499 6.3868 3.7835 48 1 4.2084 7.8716 4.7975 49 1 4.0259 5.5160 3.2239 50 1 3.1517 6.5593 2.0749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700521225.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = 30.338785 kcal Electronic energy + Delta-G solvation = -30092.511951 eV Core-core repulsion = 26155.499651 eV Total energy + Delta-G solvation = -3937.012300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.30280 -40.28627 -37.48301 -36.29280 -35.04230 -33.82648 -33.58155 -31.93836 -30.87684 -30.32116 -29.12651 -27.34004 -25.18228 -24.32524 -23.54397 -22.39008 -22.27662 -21.19815 -20.85339 -20.33437 -19.55097 -17.67474 -17.19074 -17.02349 -16.39489 -16.10039 -15.71341 -15.22903 -14.82135 -14.66433 -14.48062 -14.36945 -14.12767 -13.97109 -13.79303 -13.39756 -13.25651 -12.85183 -12.82821 -12.45339 -12.29133 -12.04463 -12.02195 -11.64387 -11.46371 -11.40209 -11.23137 -11.18491 -11.02003 -10.92854 -10.90340 -10.49473 -10.43103 -10.38262 -10.17010 -10.15252 -9.86694 -9.76194 -9.18583 -9.05387 -8.83789 -7.11711 -5.93405 -3.22972 1.82307 2.32181 2.67792 2.87416 3.18552 3.33488 3.39171 3.39727 4.00404 4.22079 4.30101 4.36635 4.44419 4.72894 4.74635 4.85613 4.91935 4.96591 5.03081 5.09701 5.10577 5.28146 5.32241 5.35239 5.38381 5.41507 5.44173 5.54865 5.70874 5.72917 5.78840 5.82122 5.86116 5.89581 5.89979 5.93252 6.04723 6.11327 6.14189 6.16790 6.30422 6.35732 6.49759 6.55357 6.76331 6.81453 7.54792 7.59713 8.24495 8.26375 8.71869 9.37411 9.91051 10.26737 11.28810 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006390 B = 0.004876 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4380.649966 B = 5740.859220 C = 9773.392022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.127 4.127 5 C 0.138 3.862 6 H 0.089 0.911 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.932 5.932 13 Si 0.907 3.093 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.707 5.707 18 C 0.523 3.477 19 O -0.529 6.529 20 C -0.122 4.122 21 H 0.106 0.894 22 C -0.106 4.106 23 C -0.033 4.033 24 C 0.172 3.828 25 N -0.296 5.296 26 N -0.307 5.307 27 C 0.162 3.838 28 N -0.467 5.467 29 C 0.113 3.887 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.034 0.966 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.403 0.597 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.221 0.779 49 H 0.108 0.892 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.442 -9.829 4.258 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.107 0.893 7 C 0.015 3.985 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.205 4.205 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 N -0.357 5.357 18 C 0.308 3.692 19 O -0.405 6.405 20 C -0.144 4.144 21 H 0.124 0.876 22 C -0.144 4.144 23 C -0.072 4.072 24 C -0.096 4.096 25 N -0.136 5.136 26 N -0.146 5.146 27 C -0.125 4.125 28 N -0.157 5.157 29 C -0.011 4.011 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.238 0.762 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.121 0.879 48 H 0.238 0.762 49 H 0.126 0.874 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.357 -9.072 4.693 16.815 hybrid contribution 2.116 -0.157 -0.764 2.255 sum -11.241 -9.229 3.929 15.066 Atomic orbital electron populations 1.21742 0.96188 1.00931 1.01841 1.21576 0.95677 0.97685 1.01406 1.21663 0.94699 0.95414 1.03095 1.21983 0.96127 0.96205 1.02309 1.21344 0.96127 0.92542 0.86660 0.89328 1.20977 0.89160 0.89395 0.98933 1.42313 1.05375 1.01931 1.87959 1.19165 0.83593 0.92515 1.42286 0.91194 1.24708 0.97706 0.95593 1.02480 1.69625 1.33062 0.99077 1.56299 0.86282 0.85038 0.76976 0.77945 1.21211 1.21634 1.21233 1.46023 1.15673 1.56735 1.17294 1.19906 0.82207 0.78621 0.88512 1.90725 1.51152 1.58979 1.39661 1.21683 0.97018 0.97486 0.98185 0.87583 1.21553 0.94003 1.02669 0.96188 1.20254 0.94272 0.97392 0.95283 1.24813 0.86410 1.01801 0.96604 1.74025 1.16526 1.09101 1.13983 1.74472 0.96239 1.22169 1.21728 1.26381 1.01770 0.93164 0.91229 1.46135 1.09830 1.33074 1.26690 1.22008 0.97756 0.92737 0.88563 0.93286 0.92974 0.92771 0.92399 0.92614 0.91902 0.91503 0.91049 0.91942 0.95745 0.94805 0.78159 0.93392 0.76229 0.90195 0.88578 0.88739 0.87907 0.76247 0.87373 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.15 0.37 -1.00 16 2 C -0.13 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.11 -1.28 3.82 -26.73 -0.10 -1.38 16 4 C -0.13 -1.47 4.89 -26.73 -0.13 -1.60 16 5 C 0.14 1.93 2.42 -67.93 -0.16 1.76 16 6 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 7 C 0.14 2.45 5.82 -4.04 -0.02 2.42 16 8 N -0.73 -16.17 5.43 -59.91 -0.33 -16.50 16 9 C -0.24 -6.23 9.99 -15.06 -0.15 -6.38 16 10 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.93 -25.78 13.06 55.49 0.72 -25.05 16 13 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 N -0.71 -8.78 4.37 -53.81 -0.24 -9.02 16 18 C 0.52 6.40 5.71 -10.98 -0.06 6.33 16 19 O -0.53 -7.86 12.96 5.55 0.07 -7.79 16 20 C -0.12 -1.18 2.54 -91.54 -0.23 -1.41 16 21 H 0.11 0.86 8.12 -51.93 -0.42 0.44 16 22 C -0.11 -0.98 4.68 -26.42 -0.12 -1.10 16 23 C -0.03 -0.29 6.34 -27.59 -0.17 -0.47 16 24 C 0.17 2.20 7.75 -155.30 -1.20 0.99 16 25 N -0.30 -4.70 12.21 32.76 0.40 -4.30 16 26 N -0.31 -4.93 12.23 29.58 0.36 -4.56 16 27 C 0.16 2.14 12.83 -90.42 -1.16 0.98 16 28 N -0.47 -5.70 3.11 -115.53 -0.36 -6.06 16 29 C 0.11 1.22 6.14 -4.02 -0.02 1.20 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.77 5.64 -51.93 -0.29 0.48 16 36 H 0.07 0.88 7.85 -51.93 -0.41 0.48 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.38 8.95 7.33 -40.82 -0.30 8.65 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.40 4.72 8.24 -40.82 -0.34 4.39 16 44 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 45 H 0.10 0.85 7.79 -51.93 -0.40 0.44 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.22 2.20 8.06 -52.49 -0.42 1.78 16 49 H 0.11 1.10 7.87 -51.93 -0.41 0.70 16 50 H 0.10 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 398.93 15.07 6.01 6.01 Total: -1.00 -31.69 398.93 -10.24 -41.93 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.43 Total: 10.66 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.44 Total: -1.37 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.57 Total: -65.49 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.07 Total: -7.79 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.69 -10.24 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700521225.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.264 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds