Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47046 * 304.99570 * 5 4 3 7 7 C 1.52999 * 109.46811 * 184.99727 * 5 4 3 8 8 N 1.46501 * 109.47016 * 185.00166 * 7 5 4 9 9 C 1.36941 * 119.99965 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00222 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99947 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47037 * 60.00108 * 13 11 9 15 15 H 1.48500 * 109.47464 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47194 * 300.00545 * 13 11 9 17 17 N 1.46496 * 109.47070 * 64.99833 * 5 4 3 18 18 C 1.34776 * 120.00212 * 274.99432 * 17 5 4 19 19 O 1.21288 * 119.99777 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00244 * 180.02562 * 18 17 5 21 21 H 1.09000 * 109.44784 * 300.00281 * 20 18 17 22 22 C 1.53139 * 109.44995 * 180.02562 * 20 18 17 23 23 C 1.53471 * 109.29868 * 170.51760 * 22 20 18 24 24 C 1.50796 * 108.12137 * 48.74972 * 23 22 20 25 25 N 1.29833 * 128.52979 * 164.02078 * 24 23 22 26 26 N 1.28904 * 109.48150 * 180.14942 * 25 24 23 27 27 C 1.30828 * 109.74262 * 359.97438 * 26 25 24 28 28 N 1.34695 * 107.07335 * 359.96962 * 27 26 25 29 29 C 1.46254 * 128.85020 * 180.10753 * 28 27 26 30 30 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 32 32 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 33 33 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 35 35 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 36 36 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 37 37 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 38 38 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 39 39 H 1.09003 * 109.47143 * 304.99714 * 7 5 4 40 40 H 1.08996 * 109.47220 * 65.00125 * 7 5 4 41 41 H 0.96993 * 119.99952 * 359.97438 * 8 7 5 42 42 H 0.97005 * 120.00340 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99885 * 94.99899 * 17 5 4 44 44 H 1.09005 * 109.49774 * 290.48190 * 22 20 18 45 45 H 1.08998 * 109.50279 * 50.58958 * 22 20 18 46 46 H 1.09001 * 109.74255 * 289.08758 * 23 22 20 47 47 H 1.09007 * 109.72740 * 168.40196 * 23 22 20 48 48 H 1.08002 * 126.46860 * 180.02562 * 27 26 25 49 49 H 1.08994 * 109.59775 * 43.15747 * 29 28 27 50 50 H 1.09007 * 109.71940 * 282.77880 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0059 9 6 7.4470 4.5094 -0.0884 10 1 8.1395 3.6950 -0.2419 11 6 7.9190 5.8098 0.0251 12 7 7.0752 6.8022 0.2127 13 14 9.7522 6.1510 -0.0867 14 1 10.2602 5.6990 -1.4069 15 1 9.9947 7.6082 0.0649 16 1 10.4592 5.4170 0.9934 17 7 3.6930 3.5392 1.2523 18 6 2.4758 4.1061 1.3683 19 8 1.7007 4.0743 0.4359 20 6 2.0778 4.7796 2.6564 21 1 2.1096 4.0548 3.4698 22 6 0.6572 5.3357 2.5232 23 6 0.1662 5.8074 3.8987 24 6 1.2411 6.6705 4.5098 25 7 1.1469 7.4924 5.5104 26 7 2.2925 8.0435 5.7235 27 6 3.1674 7.5915 4.8621 28 7 2.5252 6.7098 4.0719 29 6 3.0518 5.9250 2.9558 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.9330 0.9287 -0.8908 38 1 3.9337 0.9285 0.8891 39 1 6.0357 2.2731 0.6649 40 1 5.8895 2.4807 -1.0969 41 1 5.4812 4.9906 0.1316 42 1 7.4051 7.7110 0.2924 43 1 4.3128 3.5644 1.9981 44 1 0.6591 6.1764 1.8294 45 1 -0.0054 4.5555 2.1486 46 1 -0.0212 4.9450 4.5384 47 1 -0.7499 6.3868 3.7835 48 1 4.2084 7.8716 4.7975 49 1 4.0259 5.5160 3.2239 50 1 3.1517 6.5593 2.0749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700521225.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = 12.606705 kcal Electronic energy + Delta-G solvation = -30093.280872 eV Core-core repulsion = 26155.499651 eV Total energy + Delta-G solvation = -3937.781221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.32309 -41.31730 -38.51450 -37.40075 -36.22288 -35.13024 -34.59011 -33.21245 -32.27109 -31.37071 -30.07856 -28.65373 -26.17650 -25.76421 -24.46287 -23.72851 -23.30086 -22.29630 -21.75939 -21.40870 -20.46105 -19.23609 -18.37702 -18.09717 -17.40328 -17.17243 -16.80351 -16.50781 -16.07666 -15.68548 -15.48020 -15.29246 -15.28079 -15.10129 -14.98524 -14.66591 -14.37768 -14.12942 -13.80611 -13.54616 -13.21460 -13.14214 -12.96138 -12.84784 -12.76411 -12.65935 -12.46491 -12.26257 -12.17189 -12.05927 -11.96523 -11.83594 -11.78674 -11.42434 -11.37664 -11.31007 -11.15787 -10.96461 -10.77563 -10.22376 -9.91763 -8.97967 -7.93558 -5.21038 0.83979 1.34994 1.50036 1.51185 1.56673 1.70453 1.80576 2.19005 2.56912 3.13718 3.33737 3.41140 3.44991 3.52961 3.67515 3.82977 3.99761 4.03066 4.10216 4.13965 4.17605 4.29350 4.29956 4.35482 4.40158 4.45207 4.59061 4.60255 4.66697 4.77158 4.88927 4.95576 4.96583 4.98395 4.99731 5.03671 5.10425 5.13210 5.19045 5.20091 5.26882 5.38054 5.45786 5.53672 5.60934 5.66553 5.86585 6.27853 6.58771 7.26259 7.37004 7.66284 8.09753 8.34440 9.28451 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006390 B = 0.004876 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4380.649966 B = 5740.859220 C = 9773.392022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.119 4.119 5 C 0.150 3.850 6 H 0.061 0.939 7 C 0.144 3.856 8 N -0.740 5.740 9 C -0.243 4.243 10 H 0.075 0.925 11 C -0.064 4.064 12 N -0.961 5.961 13 Si 0.962 3.038 14 H -0.284 1.284 15 H -0.300 1.300 16 H -0.277 1.277 17 N -0.704 5.704 18 C 0.526 3.474 19 O -0.555 6.555 20 C -0.110 4.110 21 H 0.133 0.867 22 C -0.099 4.099 23 C -0.026 4.026 24 C 0.177 3.823 25 N -0.335 5.335 26 N -0.345 5.345 27 C 0.163 3.837 28 N -0.467 5.467 29 C 0.117 3.883 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.032 0.968 41 H 0.376 0.624 42 H 0.249 0.751 43 H 0.409 0.591 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.244 0.756 49 H 0.117 0.883 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.542 -12.077 4.738 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.141 4.141 4 C -0.158 4.158 5 C 0.044 3.956 6 H 0.080 0.920 7 C 0.017 3.983 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.093 0.907 11 C -0.257 4.257 12 N -0.612 5.612 13 Si 0.793 3.207 14 H -0.211 1.211 15 H -0.226 1.226 16 H -0.204 1.204 17 N -0.355 5.355 18 C 0.311 3.689 19 O -0.433 6.433 20 C -0.132 4.132 21 H 0.151 0.849 22 C -0.137 4.137 23 C -0.065 4.065 24 C -0.092 4.092 25 N -0.174 5.174 26 N -0.183 5.183 27 C -0.126 4.126 28 N -0.157 5.157 29 C -0.005 4.005 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.209 0.791 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.133 0.867 48 H 0.260 0.740 49 H 0.135 0.865 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.455 -11.364 5.182 18.359 hybrid contribution 2.137 0.485 -0.984 2.402 sum -11.318 -10.879 4.198 16.251 Atomic orbital electron populations 1.21737 0.95767 1.01695 1.01473 1.21550 0.96059 0.96325 1.02087 1.21546 0.94424 0.96422 1.01691 1.21919 0.96186 0.94294 1.03365 1.21085 0.93842 0.94061 0.86570 0.92046 1.21109 0.91171 0.86902 0.99086 1.42452 1.04300 1.03773 1.87782 1.19523 0.85144 0.92520 1.40275 0.90747 1.25353 1.00961 0.95765 1.03588 1.69758 1.34287 0.98928 1.58198 0.85384 0.81312 0.76095 0.77950 1.21091 1.22636 1.20350 1.45966 1.15962 1.56713 1.16835 1.20243 0.81654 0.78030 0.88966 1.90724 1.51898 1.59915 1.40807 1.21628 0.96790 0.97277 0.97455 0.84910 1.21494 0.93883 1.02270 0.96066 1.20436 0.93377 0.97772 0.94958 1.25473 0.87189 1.00946 0.95570 1.73943 1.16920 1.10671 1.15872 1.74387 0.96976 1.23573 1.23384 1.26859 1.02484 0.92664 0.90573 1.46208 1.09754 1.33006 1.26702 1.21978 0.98529 0.92591 0.87440 0.91956 0.93004 0.93523 0.91999 0.91594 0.92510 0.93737 0.90394 0.90399 0.94231 0.95014 0.79112 0.94192 0.75567 0.91956 0.87512 0.86169 0.86719 0.73953 0.86525 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.11 5.93 30.59 0.18 -1.93 16 3 C -0.10 -2.21 3.82 30.60 0.12 -2.10 16 4 C -0.12 -2.51 4.89 30.60 0.15 -2.36 16 5 C 0.15 4.04 2.42 44.99 0.11 4.15 16 6 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 7 C 0.14 4.73 5.82 86.38 0.50 5.24 16 8 N -0.74 -32.33 5.43 -343.45 -1.87 -34.20 16 9 C -0.24 -12.17 9.99 84.03 0.84 -11.33 16 10 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 11 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 12 N -0.96 -53.56 13.06 21.65 0.28 -53.28 16 13 Si 0.96 43.09 29.55 68.60 2.03 45.12 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 17 N -0.70 -16.63 4.37 -442.53 -1.94 -18.56 16 18 C 0.53 12.27 5.71 87.66 0.50 12.77 16 19 O -0.56 -16.25 12.96 -3.05 -0.04 -16.29 16 20 C -0.11 -1.93 2.54 -11.39 -0.03 -1.96 16 21 H 0.13 1.70 8.12 -2.39 -0.02 1.68 16 22 C -0.10 -1.66 4.68 30.80 0.14 -1.52 16 23 C -0.03 -0.41 6.34 30.04 0.19 -0.22 16 24 C 0.18 4.34 7.75 138.13 1.07 5.41 16 25 N -0.33 -10.54 12.21 -50.28 -0.61 -11.16 16 26 N -0.34 -11.12 12.23 -60.31 -0.74 -11.86 16 27 C 0.16 4.23 12.83 180.28 2.31 6.54 16 28 N -0.47 -11.00 3.11 -519.43 -1.62 -12.62 16 29 C 0.12 2.44 6.14 86.53 0.53 2.97 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.29 5.64 -2.39 -0.01 1.27 16 36 H 0.04 1.15 7.85 -2.39 -0.02 1.14 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.38 17.59 7.33 -92.71 -0.68 16.91 16 42 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 43 H 0.41 8.86 8.24 -92.71 -0.76 8.09 16 44 H 0.06 1.29 8.12 -2.38 -0.02 1.27 16 45 H 0.11 1.64 7.79 -2.39 -0.02 1.62 16 46 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 48 H 0.24 4.73 8.06 -2.91 -0.02 4.70 16 49 H 0.12 2.24 7.87 -2.39 -0.02 2.22 16 50 H 0.09 2.15 8.12 -2.38 -0.02 2.13 16 Total: -1.00 -68.50 398.93 2.80 -65.70 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.50 Total: 36.09 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 7.80 Total: 11.06 kcal Atomic # 7 Polarization: -135.19 SS G_CDS: -6.49 Total: -141.68 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.04 Total: -16.29 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.50 2.80 -65.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700521225.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.305 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds