Wall clock time and date at job start Tue Mar 31 2020 20:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47630 * 54.99890 * 5 4 3 7 7 C 1.53011 * 109.46990 * 174.99691 * 5 4 3 8 8 N 1.46498 * 109.47184 * 174.99721 * 7 5 4 9 9 C 1.36934 * 120.00204 * 179.97438 * 8 7 5 10 10 H 1.08007 * 119.99755 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00098 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99935 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00329 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46879 * 89.99956 * 13 11 9 15 15 H 1.48497 * 109.47359 * 210.00045 * 13 11 9 16 16 H 1.48502 * 109.46986 * 330.00445 * 13 11 9 17 17 N 1.46497 * 109.46827 * 294.99148 * 5 4 3 18 18 C 1.34776 * 119.99663 * 85.00574 * 17 5 4 19 19 O 1.21285 * 120.00122 * 359.97438 * 18 17 5 20 20 C 1.50703 * 120.00283 * 179.97438 * 18 17 5 21 21 H 1.09000 * 109.44605 * 60.04568 * 20 18 17 22 22 C 1.53132 * 109.45686 * 180.02562 * 20 18 17 23 23 C 1.53459 * 109.30927 * 189.46422 * 22 20 18 24 24 C 1.50801 * 108.13039 * 311.28820 * 23 22 20 25 25 N 1.29841 * 128.51781 * 195.90158 * 24 23 22 26 26 N 1.28910 * 109.47622 * 179.90858 * 25 24 23 27 27 C 1.30838 * 109.74054 * 0.02572 * 26 25 24 28 28 N 1.34689 * 107.07324 * 0.03432 * 27 26 25 29 29 C 1.46260 * 128.85262 * 179.87943 * 28 27 26 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 36 36 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 37 37 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 38 38 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 39 39 H 1.08999 * 109.46934 * 295.00015 * 7 5 4 40 40 H 1.09005 * 109.47089 * 54.99601 * 7 5 4 41 41 H 0.96996 * 119.99992 * 0.02562 * 8 7 5 42 42 H 0.96994 * 119.99944 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00119 * 264.99882 * 17 5 4 44 44 H 1.09008 * 109.49789 * 309.41362 * 22 20 18 45 45 H 1.09003 * 109.49740 * 69.50929 * 22 20 18 46 46 H 1.09003 * 109.72791 * 70.94795 * 23 22 20 47 47 H 1.09001 * 109.73090 * 191.62817 * 23 22 20 48 48 H 1.07998 * 126.46558 * 180.02562 * 27 26 25 49 49 H 1.08994 * 109.59253 * 77.34438 * 29 28 27 50 50 H 1.09001 * 109.58898 * 316.88908 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 5.6049 2.8867 0.1252 8 7 6.1031 4.2592 0.0059 9 6 7.4469 4.5094 0.0878 10 1 8.1396 3.6947 0.2398 11 6 7.9189 5.8099 -0.0247 12 7 9.2107 6.0502 0.0535 13 14 6.7209 7.2190 -0.2869 14 1 6.2897 7.7534 1.0298 15 1 7.3854 8.2955 -1.0645 16 1 5.5353 6.7280 -1.0342 17 7 3.6920 3.5405 -1.2513 18 6 2.4747 4.1076 -1.3657 19 8 1.7003 4.0746 -0.4329 20 6 2.0757 4.7825 -2.6527 21 1 2.1060 4.0583 -3.4668 22 6 0.6557 5.3395 -2.5176 23 6 0.1635 5.8132 -3.8918 24 6 1.2387 6.6756 -4.5037 25 7 1.1441 7.4975 -5.5044 26 7 2.2903 8.0469 -5.7191 27 6 3.1657 7.5937 -4.8589 28 7 2.5234 6.7130 -4.0677 29 6 3.0505 5.9273 -2.9524 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.9337 0.9286 0.8892 38 1 3.9330 0.9287 -0.8908 39 1 5.8903 2.4795 1.0951 40 1 6.0352 2.2739 -0.6670 41 1 5.4811 4.9908 -0.1302 42 1 9.5404 6.9590 -0.0247 43 1 4.3113 3.5666 -1.9975 44 1 -0.0071 4.5594 -2.1429 45 1 0.6589 6.1795 -1.8229 46 1 -0.0258 4.9515 -4.5319 47 1 -0.7517 6.3936 -3.7749 48 1 4.2070 7.8730 -4.7952 49 1 3.1497 6.5627 -2.0724 50 1 4.0239 5.5175 -3.2219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700521231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:58 Heat of formation + Delta-G solvation = 34.959281 kcal Electronic energy + Delta-G solvation = -30283.156883 eV Core-core repulsion = 26346.344943 eV Total energy + Delta-G solvation = -3936.811940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.45828 -40.46587 -37.64464 -36.46841 -35.17299 -33.97349 -33.72256 -32.06724 -31.17913 -30.53117 -29.28332 -27.69054 -25.37714 -24.35396 -23.68271 -22.44201 -22.13710 -21.36137 -20.90194 -20.51372 -19.72413 -18.08854 -17.44966 -17.24240 -16.55615 -16.23358 -15.87254 -15.33152 -14.95641 -14.71353 -14.64134 -14.50390 -14.32424 -14.19908 -13.92811 -13.53882 -13.21880 -12.98068 -12.94115 -12.57266 -12.42398 -12.23626 -12.17709 -11.79643 -11.61224 -11.55409 -11.50223 -11.38222 -11.14355 -11.03571 -11.02386 -10.53866 -10.51538 -10.48632 -10.36073 -10.27632 -9.93279 -9.77509 -9.33102 -9.12136 -9.00456 -7.44176 -5.93617 -3.30898 1.66311 2.14160 2.48728 2.73383 3.00826 3.09987 3.23053 3.29727 3.83377 4.05421 4.13301 4.20098 4.40080 4.55066 4.58996 4.68280 4.75589 4.84043 4.89603 4.93126 5.00671 5.12682 5.16088 5.22068 5.24391 5.30607 5.35948 5.41436 5.55145 5.58913 5.61377 5.72017 5.73338 5.74702 5.75532 5.84637 5.92685 5.98296 5.99035 6.07263 6.17831 6.27243 6.39071 6.44670 6.61676 6.64827 7.41187 7.80875 8.07387 8.24701 8.57414 9.02358 9.73931 9.92815 11.24558 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006363 B = 0.005712 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4399.451854 B = 4901.141417 C = 8858.877479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.127 4.127 5 C 0.133 3.867 6 H 0.089 0.911 7 C 0.148 3.852 8 N -0.754 5.754 9 C -0.249 4.249 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.885 3.115 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.283 1.283 17 N -0.711 5.711 18 C 0.521 3.479 19 O -0.526 6.526 20 C -0.123 4.123 21 H 0.110 0.890 22 C -0.106 4.106 23 C -0.033 4.033 24 C 0.174 3.826 25 N -0.294 5.294 26 N -0.303 5.303 27 C 0.159 3.841 28 N -0.469 5.469 29 C 0.110 3.890 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.361 0.639 42 H 0.261 0.739 43 H 0.403 0.597 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.220 0.780 49 H 0.099 0.901 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.386 -8.434 -4.873 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.166 4.166 5 C 0.029 3.971 6 H 0.108 0.892 7 C 0.021 3.979 8 N -0.400 5.400 9 C -0.379 4.379 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.577 5.577 13 Si 0.716 3.284 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.210 1.210 17 N -0.362 5.362 18 C 0.305 3.695 19 O -0.402 6.402 20 C -0.145 4.145 21 H 0.128 0.872 22 C -0.144 4.144 23 C -0.072 4.072 24 C -0.094 4.094 25 N -0.134 5.134 26 N -0.142 5.142 27 C -0.128 4.128 28 N -0.160 5.160 29 C -0.014 4.014 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.194 0.806 42 H 0.071 0.929 43 H 0.238 0.762 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.122 0.878 48 H 0.237 0.763 49 H 0.117 0.883 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.220 -7.699 -5.300 20.477 hybrid contribution 0.561 0.472 0.545 0.914 sum -17.658 -7.227 -4.754 19.663 Atomic orbital electron populations 1.21740 0.96169 1.01000 1.01802 1.21572 0.95688 0.97578 1.01508 1.21664 0.94653 0.95555 1.03026 1.21974 0.96153 0.95883 1.02594 1.21434 0.96197 0.92945 0.86513 0.89246 1.20963 0.88859 0.88302 0.99814 1.42665 1.05343 1.02482 1.89557 1.19039 0.81964 0.94278 1.42595 0.89078 1.24672 0.95469 0.96867 1.01806 1.69687 1.11393 1.20067 1.56524 0.86585 0.80327 0.83390 0.78078 1.21062 1.21588 1.20961 1.46111 1.15791 1.56835 1.17503 1.19945 0.82216 0.78753 0.88571 1.90733 1.51031 1.58883 1.39525 1.21706 0.97030 0.97414 0.98335 0.87209 1.21558 0.93899 1.02689 0.96287 1.20267 0.94258 0.97480 0.95231 1.24851 0.86277 1.01715 0.96555 1.74055 1.16435 1.09056 1.13808 1.74496 0.96185 1.22006 1.21494 1.26378 1.01778 0.93313 0.91370 1.46133 1.09927 1.33226 1.26756 1.22049 0.98010 0.92825 0.88495 0.93000 0.93221 0.92791 0.92550 0.92315 0.91975 0.91502 0.90811 0.91730 0.93846 0.94854 0.80632 0.92874 0.76168 0.88365 0.90262 0.88555 0.87760 0.76318 0.88269 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.31 16 3 C -0.11 -1.19 3.82 -26.73 -0.10 -1.29 16 4 C -0.13 -1.36 4.89 -26.73 -0.13 -1.49 16 5 C 0.13 1.72 2.42 -67.93 -0.16 1.56 16 6 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 7 C 0.15 2.38 5.82 -4.04 -0.02 2.36 16 8 N -0.75 -15.58 5.24 -59.90 -0.31 -15.89 16 9 C -0.25 -6.44 10.47 -15.06 -0.16 -6.60 16 10 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 11 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 12 N -0.93 -27.66 13.97 55.49 0.78 -26.88 16 13 Si 0.89 20.37 27.74 -169.99 -4.71 15.66 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -5.67 6.52 56.52 0.37 -5.30 16 17 N -0.71 -8.11 4.37 -53.80 -0.24 -8.35 16 18 C 0.52 5.83 5.71 -10.98 -0.06 5.77 16 19 O -0.53 -7.22 12.96 5.55 0.07 -7.15 16 20 C -0.12 -1.08 2.54 -91.54 -0.23 -1.31 16 21 H 0.11 0.78 8.12 -51.93 -0.42 0.36 16 22 C -0.11 -0.88 4.68 -26.43 -0.12 -1.01 16 23 C -0.03 -0.27 6.34 -27.60 -0.17 -0.44 16 24 C 0.17 2.08 7.75 -155.30 -1.20 0.87 16 25 N -0.29 -4.42 12.21 32.76 0.40 -4.02 16 26 N -0.30 -4.63 12.23 29.58 0.36 -4.27 16 27 C 0.16 1.96 12.83 -90.41 -1.16 0.80 16 28 N -0.47 -5.35 3.11 -115.52 -0.36 -5.71 16 29 C 0.11 1.09 6.14 -4.01 -0.02 1.06 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.71 5.65 -51.93 -0.29 0.41 16 36 H 0.07 0.82 7.84 -51.93 -0.41 0.42 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.36 7.30 5.20 -40.82 -0.21 7.09 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.40 4.24 8.24 -40.82 -0.34 3.90 16 44 H 0.10 0.77 7.79 -51.92 -0.40 0.37 16 45 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.22 1.98 8.06 -52.49 -0.42 1.56 16 49 H 0.10 1.11 8.12 -51.93 -0.42 0.68 16 50 H 0.11 0.97 7.86 -51.93 -0.41 0.56 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -33.11 395.80 -9.88 -42.99 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -8.38 Total: 9.49 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.44 Total: -1.83 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.63 Total: -65.12 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.07 Total: -7.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.71 Total: 15.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.11 -9.88 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700521231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.946 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds