Wall clock time and date at job start Tue Mar 31 2020 20:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47630 * 54.99890 * 5 4 3 7 7 C 1.53011 * 109.46990 * 174.99691 * 5 4 3 8 8 N 1.46498 * 109.47184 * 174.99721 * 7 5 4 9 9 C 1.36934 * 120.00204 * 179.97438 * 8 7 5 10 10 H 1.08007 * 119.99755 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00098 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99935 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00329 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46879 * 89.99956 * 13 11 9 15 15 H 1.48497 * 109.47359 * 210.00045 * 13 11 9 16 16 H 1.48502 * 109.46986 * 330.00445 * 13 11 9 17 17 N 1.46497 * 109.46827 * 294.99148 * 5 4 3 18 18 C 1.34776 * 119.99663 * 85.00574 * 17 5 4 19 19 O 1.21285 * 120.00122 * 359.97438 * 18 17 5 20 20 C 1.50703 * 120.00283 * 179.97438 * 18 17 5 21 21 H 1.09000 * 109.44605 * 60.04568 * 20 18 17 22 22 C 1.53132 * 109.45686 * 180.02562 * 20 18 17 23 23 C 1.53459 * 109.30927 * 189.46422 * 22 20 18 24 24 C 1.50801 * 108.13039 * 311.28820 * 23 22 20 25 25 N 1.29841 * 128.51781 * 195.90158 * 24 23 22 26 26 N 1.28910 * 109.47622 * 179.90858 * 25 24 23 27 27 C 1.30838 * 109.74054 * 0.02572 * 26 25 24 28 28 N 1.34689 * 107.07324 * 0.03432 * 27 26 25 29 29 C 1.46260 * 128.85262 * 179.87943 * 28 27 26 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 35 35 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 36 36 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 37 37 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 38 38 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 39 39 H 1.08999 * 109.46934 * 295.00015 * 7 5 4 40 40 H 1.09005 * 109.47089 * 54.99601 * 7 5 4 41 41 H 0.96996 * 119.99992 * 0.02562 * 8 7 5 42 42 H 0.96994 * 119.99944 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00119 * 264.99882 * 17 5 4 44 44 H 1.09008 * 109.49789 * 309.41362 * 22 20 18 45 45 H 1.09003 * 109.49740 * 69.50929 * 22 20 18 46 46 H 1.09003 * 109.72791 * 70.94795 * 23 22 20 47 47 H 1.09001 * 109.73090 * 191.62817 * 23 22 20 48 48 H 1.07998 * 126.46558 * 180.02562 * 27 26 25 49 49 H 1.08994 * 109.59253 * 77.34438 * 29 28 27 50 50 H 1.09001 * 109.58898 * 316.88908 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 5.6049 2.8867 0.1252 8 7 6.1031 4.2592 0.0059 9 6 7.4469 4.5094 0.0878 10 1 8.1396 3.6947 0.2398 11 6 7.9189 5.8099 -0.0247 12 7 9.2107 6.0502 0.0535 13 14 6.7209 7.2190 -0.2869 14 1 6.2897 7.7534 1.0298 15 1 7.3854 8.2955 -1.0645 16 1 5.5353 6.7280 -1.0342 17 7 3.6920 3.5405 -1.2513 18 6 2.4747 4.1076 -1.3657 19 8 1.7003 4.0746 -0.4329 20 6 2.0757 4.7825 -2.6527 21 1 2.1060 4.0583 -3.4668 22 6 0.6557 5.3395 -2.5176 23 6 0.1635 5.8132 -3.8918 24 6 1.2387 6.6756 -4.5037 25 7 1.1441 7.4975 -5.5044 26 7 2.2903 8.0469 -5.7191 27 6 3.1657 7.5937 -4.8589 28 7 2.5234 6.7130 -4.0677 29 6 3.0505 5.9273 -2.9524 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.9337 0.9286 0.8892 38 1 3.9330 0.9287 -0.8908 39 1 5.8903 2.4795 1.0951 40 1 6.0352 2.2739 -0.6670 41 1 5.4811 4.9908 -0.1302 42 1 9.5404 6.9590 -0.0247 43 1 4.3113 3.5666 -1.9975 44 1 -0.0071 4.5594 -2.1429 45 1 0.6589 6.1795 -1.8229 46 1 -0.0258 4.9515 -4.5319 47 1 -0.7517 6.3936 -3.7749 48 1 4.2070 7.8730 -4.7952 49 1 3.1497 6.5627 -2.0724 50 1 4.0239 5.5175 -3.2219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700521231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:57 Heat of formation + Delta-G solvation = 15.158656 kcal Electronic energy + Delta-G solvation = -30284.015502 eV Core-core repulsion = 26346.344943 eV Total energy + Delta-G solvation = -3937.670560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.36642 -41.38584 -38.58957 -37.48656 -36.30930 -35.17950 -34.63679 -33.42939 -32.53289 -31.46131 -30.12443 -28.93685 -26.23421 -25.65862 -24.49376 -23.53712 -23.35560 -22.40045 -21.76009 -21.48814 -20.52868 -19.77866 -18.44818 -18.15496 -17.45212 -17.19707 -16.85097 -16.53647 -16.15226 -15.74731 -15.68270 -15.39007 -15.31747 -15.09779 -14.86131 -14.68116 -14.50780 -14.28079 -13.90942 -13.71605 -13.37141 -13.20740 -13.03502 -12.94729 -12.88082 -12.69779 -12.55204 -12.29617 -12.13901 -12.04797 -11.93437 -11.84979 -11.79171 -11.45278 -11.42420 -11.31978 -11.21110 -11.04837 -10.83360 -10.26490 -9.98920 -9.31450 -8.02466 -5.36447 0.79434 1.26667 1.30476 1.39830 1.46296 1.63165 1.77486 2.12013 2.46445 3.08195 3.28153 3.30178 3.38269 3.45183 3.53035 3.77654 3.89483 3.96053 4.01844 4.09505 4.11822 4.18202 4.24701 4.33040 4.36653 4.40697 4.54786 4.55921 4.64313 4.72309 4.86832 4.92449 4.95043 4.96437 4.97049 5.02373 5.07250 5.11413 5.16591 5.17206 5.24517 5.37285 5.43525 5.58028 5.63829 5.77329 5.82126 6.20239 6.52519 7.07738 7.19802 7.62950 7.81989 8.01269 9.18881 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006363 B = 0.005712 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4399.451854 B = 4901.141417 C = 8858.877479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.120 4.120 5 C 0.147 3.853 6 H 0.071 0.929 7 C 0.147 3.853 8 N -0.753 5.753 9 C -0.230 4.230 10 H 0.059 0.941 11 C -0.060 4.060 12 N -0.983 5.983 13 Si 0.947 3.053 14 H -0.294 1.294 15 H -0.298 1.298 16 H -0.236 1.236 17 N -0.710 5.710 18 C 0.525 3.475 19 O -0.550 6.550 20 C -0.112 4.112 21 H 0.135 0.865 22 C -0.099 4.099 23 C -0.027 4.027 24 C 0.179 3.821 25 N -0.335 5.335 26 N -0.344 5.344 27 C 0.161 3.839 28 N -0.469 5.469 29 C 0.107 3.893 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.366 0.634 42 H 0.256 0.744 43 H 0.410 0.590 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.114 0.886 48 H 0.247 0.753 49 H 0.089 0.911 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 -9.740 -5.619 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.141 4.141 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.089 0.911 7 C 0.021 3.979 8 N -0.399 5.399 9 C -0.361 4.361 10 H 0.077 0.923 11 C -0.252 4.252 12 N -0.634 5.634 13 Si 0.775 3.225 14 H -0.222 1.222 15 H -0.224 1.224 16 H -0.159 1.159 17 N -0.362 5.362 18 C 0.310 3.690 19 O -0.428 6.428 20 C -0.134 4.134 21 H 0.153 0.847 22 C -0.138 4.138 23 C -0.066 4.066 24 C -0.090 4.090 25 N -0.174 5.174 26 N -0.183 5.183 27 C -0.128 4.128 28 N -0.159 5.159 29 C -0.016 4.016 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.199 0.801 42 H 0.065 0.935 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.263 0.737 49 H 0.108 0.892 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.405 -9.049 -6.069 23.132 hybrid contribution 1.256 0.757 0.863 1.702 sum -19.149 -8.292 -5.206 21.507 Atomic orbital electron populations 1.21735 0.95785 1.01657 1.01495 1.21552 0.96035 0.96483 1.02044 1.21548 0.94348 0.96349 1.01821 1.21923 0.96214 0.94285 1.03499 1.21154 0.93502 0.94396 0.86786 0.91081 1.21106 0.91169 0.85881 0.99788 1.42608 1.03378 1.04643 1.89301 1.19007 0.83795 0.93230 1.40066 0.92315 1.25443 0.97078 0.99820 1.02817 1.69877 1.13953 1.20329 1.59228 0.85549 0.79626 0.79486 0.77825 1.22156 1.22449 1.15941 1.46068 1.16191 1.56844 1.17069 1.20255 0.81606 0.78168 0.88972 1.90740 1.51697 1.59751 1.40624 1.21659 0.96819 0.97325 0.97598 0.84724 1.21502 0.93840 1.02369 0.96044 1.20440 0.93382 0.97767 0.95054 1.25482 0.87150 1.00829 0.95517 1.73970 1.16910 1.10722 1.15784 1.74406 0.96975 1.23568 1.23316 1.26903 1.02538 0.92710 0.90601 1.46215 1.09741 1.33150 1.26840 1.22152 0.98941 0.92796 0.87667 0.92960 0.92108 0.93464 0.91695 0.92069 0.92394 0.93475 0.90348 0.90399 0.94342 0.93761 0.80092 0.93463 0.75342 0.87464 0.91680 0.86254 0.86736 0.73719 0.89229 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.95 5.93 30.59 0.18 -1.77 16 3 C -0.10 -1.97 3.82 30.59 0.12 -1.85 16 4 C -0.12 -2.26 4.89 30.59 0.15 -2.11 16 5 C 0.15 3.45 2.42 45.00 0.11 3.56 16 6 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 7 C 0.15 4.45 5.82 86.38 0.50 4.96 16 8 N -0.75 -29.84 5.24 -343.44 -1.80 -31.64 16 9 C -0.23 -11.86 10.47 84.03 0.88 -10.98 16 10 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 11 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 12 N -0.98 -59.92 13.97 21.65 0.30 -59.62 16 13 Si 0.95 41.36 27.74 68.60 1.90 43.26 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.24 -8.27 6.52 99.48 0.65 -7.62 16 17 N -0.71 -14.04 4.37 -442.52 -1.93 -15.98 16 18 C 0.52 10.18 5.71 87.66 0.50 10.68 16 19 O -0.55 -13.88 12.96 -3.04 -0.04 -13.92 16 20 C -0.11 -1.58 2.54 -11.39 -0.03 -1.61 16 21 H 0.13 1.30 8.12 -2.39 -0.02 1.28 16 22 C -0.10 -1.35 4.68 30.79 0.14 -1.21 16 23 C -0.03 -0.36 6.34 30.03 0.19 -0.17 16 24 C 0.18 3.90 7.75 138.14 1.07 4.97 16 25 N -0.33 -9.75 12.21 -50.27 -0.61 -10.37 16 26 N -0.34 -10.25 12.23 -60.32 -0.74 -10.99 16 27 C 0.16 3.66 12.83 180.28 2.31 5.97 16 28 N -0.47 -9.48 3.11 -519.39 -1.62 -11.10 16 29 C 0.11 1.77 6.14 86.53 0.53 2.30 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.16 5.65 -2.39 -0.01 1.15 16 36 H 0.05 1.09 7.84 -2.39 -0.02 1.08 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.37 13.80 5.20 -92.71 -0.48 13.32 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.41 7.13 8.24 -92.71 -0.76 6.37 16 44 H 0.11 1.33 7.79 -2.38 -0.02 1.32 16 45 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 46 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.25 3.82 8.06 -2.91 -0.02 3.80 16 49 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 50 H 0.12 1.69 7.86 -2.39 -0.02 1.67 16 Total: -1.00 -73.88 395.80 2.94 -70.94 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.36 Total: 31.01 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.84 Total: 8.40 kcal Atomic # 7 Polarization: -133.29 SS G_CDS: -6.40 Total: -139.69 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.04 Total: -13.92 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.90 Total: 43.26 kcal Total: -73.88 2.94 -70.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700521231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.099 kcal (2) G-P(sol) polarization free energy of solvation -73.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds