Wall clock time and date at job start Tue Mar 31 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36598 * 126.57644 * 2 1 4 4 C 1.47520 * 125.76894 * 0.03954 * 3 2 1 5 5 O 1.21587 * 120.00627 * 5.67507 * 4 3 2 6 6 N 1.34785 * 119.99584 * 185.67567 * 4 3 2 7 7 C 1.46498 * 119.99779 * 356.06571 * 6 4 3 8 8 C 1.46492 * 119.99876 * 176.06390 * 6 4 3 9 9 H 1.08997 * 109.47324 * 359.97438 * 8 6 4 10 10 C 1.53002 * 109.47133 * 120.00094 * 8 6 4 11 11 N 1.46501 * 109.47160 * 304.99780 * 10 8 6 12 12 C 1.36931 * 119.99891 * 179.97438 * 11 10 8 13 13 H 1.07996 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.38818 * 120.00026 * 180.02562 * 12 11 10 15 15 N 1.31613 * 120.00188 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99545 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47157 * 90.00172 * 16 14 12 18 18 H 1.48499 * 109.47006 * 210.00115 * 16 14 12 19 19 H 1.48500 * 109.47460 * 330.00180 * 16 14 12 20 20 C 1.53000 * 109.47410 * 239.99895 * 8 6 4 21 21 C 1.53001 * 117.50314 * 248.74819 * 20 8 6 22 22 C 1.53001 * 117.50368 * 180.08723 * 20 8 6 23 23 N 1.34401 * 108.45568 * 179.76917 * 3 2 1 24 24 N 1.28761 * 109.52340 * 0.23238 * 23 3 2 25 25 N 1.34813 * 126.58108 * 180.16417 * 2 1 3 26 26 C 1.46498 * 126.59625 * 359.97027 * 25 2 1 27 27 C 1.53003 * 109.47199 * 120.27257 * 26 25 2 28 28 C 1.53003 * 109.47180 * 240.27348 * 26 25 2 29 29 H 1.08995 * 109.47192 * 90.02907 * 1 2 3 30 30 H 1.09007 * 109.46540 * 210.02597 * 1 2 3 31 31 H 1.09002 * 109.47270 * 330.02199 * 1 2 3 32 32 H 1.09000 * 109.47361 * 275.75942 * 7 6 4 33 33 H 1.08997 * 109.47834 * 35.76483 * 7 6 4 34 34 H 1.09004 * 109.47003 * 155.76449 * 7 6 4 35 35 H 1.08999 * 109.47088 * 65.00300 * 10 8 6 36 36 H 1.09006 * 109.47194 * 185.00045 * 10 8 6 37 37 H 0.96996 * 119.99371 * 359.97438 * 11 10 8 38 38 H 0.96998 * 120.00118 * 179.97438 * 15 14 12 39 39 H 1.09001 * 115.54676 * 34.41703 * 20 8 6 40 40 H 1.08998 * 117.49661 * 0.02562 * 21 20 8 41 41 H 1.08994 * 117.49891 * 145.01807 * 21 20 8 42 42 H 1.09004 * 117.50082 * 214.98313 * 22 20 8 43 43 H 1.09002 * 117.49365 * 359.97438 * 22 20 8 44 44 H 1.09002 * 109.47099 * 0.27539 * 26 25 2 45 45 H 1.09002 * 109.46864 * 60.00138 * 27 26 25 46 46 H 1.08993 * 109.47192 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.46695 * 300.00027 * 27 26 25 48 48 H 1.09001 * 109.46752 * 59.99672 * 28 26 25 49 49 H 1.09002 * 109.47102 * 180.02562 * 28 26 25 50 50 H 1.09006 * 109.46784 * 300.00032 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5027 0.0008 5 8 0.6909 2.7643 0.1057 6 7 2.7761 3.4971 -0.1147 7 6 4.2072 3.1865 -0.1543 8 6 2.3258 4.8885 -0.2007 9 1 1.2373 4.9216 -0.1556 10 6 2.9097 5.6866 0.9668 11 7 2.5546 5.0347 2.2299 12 6 2.9707 5.5725 3.4185 13 1 3.5603 6.4773 3.4249 14 6 2.6347 4.9546 4.6153 15 7 3.0342 5.4717 5.7578 16 14 1.6144 3.3899 4.6042 17 1 2.5157 2.2116 4.5360 18 1 0.8016 3.3202 5.8451 19 1 0.7147 3.3939 3.4228 20 6 2.7997 5.4972 -1.5220 21 6 3.8734 6.5852 -1.4539 22 6 2.4293 6.9552 -1.8013 23 7 3.5984 0.6790 0.0051 24 7 3.6299 -0.6083 0.0034 25 7 2.3105 -1.0826 -0.0031 26 6 1.8865 -2.4848 -0.0065 27 6 2.4345 -3.1803 -1.2543 28 6 2.4241 -3.1833 1.2442 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.5857 3.0865 0.8630 33 1 4.3614 2.2515 -0.6929 34 1 4.7396 3.9906 -0.6625 35 1 3.9947 5.7283 0.8719 36 1 2.5047 6.6985 0.9538 37 1 2.0248 4.2223 2.2241 38 1 2.7992 5.0401 6.5940 39 1 2.8288 4.8139 -2.3707 40 1 4.2424 6.8669 -0.4677 41 1 4.6085 6.6178 -2.2579 42 1 2.2150 7.2311 -2.8339 43 1 1.8475 7.4806 -1.0439 44 1 0.7977 -2.5352 -0.0111 45 1 3.5233 -3.1300 -1.2497 46 1 2.1194 -4.2237 -1.2566 47 1 2.0514 -2.6827 -2.1453 48 1 2.0337 -2.6877 2.1331 49 1 2.1090 -4.2267 1.2414 50 1 3.5130 -3.1329 1.2487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700732695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:58 Heat of formation + Delta-G solvation = 90.414772 kcal Electronic energy + Delta-G solvation = -30665.896159 eV Core-core repulsion = 26731.488949 eV Total energy + Delta-G solvation = -3934.407210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.42190 -41.09480 -39.00825 -37.44872 -36.53519 -35.87458 -34.03473 -33.50296 -32.09905 -30.16259 -28.80196 -28.31097 -27.78578 -26.19919 -25.00532 -24.15015 -23.64850 -23.03120 -21.38152 -21.11282 -20.37342 -19.35224 -18.44839 -17.70520 -17.46034 -17.28358 -16.85348 -16.41146 -16.12612 -15.47210 -15.44376 -15.36482 -15.10915 -14.89190 -14.76451 -14.31621 -14.23413 -14.07278 -13.99152 -13.75326 -13.49999 -13.46159 -13.27592 -13.22101 -13.10491 -12.87730 -12.78289 -12.57229 -12.35154 -12.26018 -12.17755 -12.06484 -11.89912 -11.79149 -11.42062 -11.19740 -11.10170 -10.99323 -10.77073 -10.26536 -9.62642 -9.34508 -8.10420 -5.40541 0.06229 0.56859 1.01085 1.23497 1.24580 1.34414 1.88290 2.13176 2.37479 2.93667 3.09138 3.21590 3.22885 3.44369 3.50143 3.64269 3.77547 3.87721 3.93562 3.99960 4.06112 4.08687 4.15095 4.28616 4.43314 4.44664 4.54234 4.57456 4.60605 4.60917 4.65163 4.71957 4.76941 4.80249 4.86317 4.88686 5.01715 5.06810 5.11821 5.13224 5.15270 5.22308 5.25237 5.35140 5.51355 5.59121 5.70181 6.14679 6.27623 6.81099 7.00313 7.06194 7.78099 7.95902 9.11352 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.004602 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.556416 B = 6082.206409 C = 7940.951371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.127 3.873 3 C -0.133 4.133 4 C 0.592 3.408 5 O -0.565 6.565 6 N -0.584 5.584 7 C 0.083 3.917 8 C 0.166 3.834 9 H 0.086 0.914 10 C 0.147 3.853 11 N -0.756 5.756 12 C -0.224 4.224 13 H 0.068 0.932 14 C -0.051 4.051 15 N -0.976 5.976 16 Si 0.935 3.065 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.268 1.268 20 C -0.164 4.164 21 C -0.176 4.176 22 C -0.162 4.162 23 N -0.218 5.218 24 N -0.086 5.086 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.155 4.155 28 C -0.162 4.162 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.360 0.640 38 H 0.258 0.742 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.057 0.943 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.116 0.884 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -17.807 -21.352 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.012 4.012 3 C -0.272 4.272 4 C 0.380 3.620 5 O -0.444 6.444 6 N -0.313 5.313 7 C -0.059 4.059 8 C 0.062 3.938 9 H 0.104 0.896 10 C 0.021 3.979 11 N -0.401 5.401 12 C -0.355 4.355 13 H 0.086 0.914 14 C -0.244 4.244 15 N -0.627 5.627 16 Si 0.764 3.236 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.183 4.183 21 C -0.213 4.213 22 C -0.199 4.199 23 N -0.090 5.090 24 N -0.065 5.065 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.213 4.213 28 C -0.220 4.220 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.192 0.808 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.107 0.893 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.132 0.868 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.135 0.865 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.075 -17.964 -21.166 27.931 hybrid contribution -1.152 -0.408 0.943 1.544 sum -4.227 -18.372 -20.222 27.647 Atomic orbital electron populations 1.20857 0.82581 1.05982 1.06002 1.22318 0.97466 0.85901 0.95484 1.21207 0.89902 0.95315 1.20772 1.17127 0.85216 0.83528 0.76147 1.90709 1.17053 1.83831 1.52809 1.47585 1.07803 1.05639 1.70304 1.22096 0.78773 1.03392 1.01667 1.20781 0.99691 0.79513 0.93777 0.89603 1.21300 0.98088 0.94843 0.83712 1.42730 1.64791 1.30306 1.02318 1.19080 1.25670 1.06658 0.84100 0.91390 1.25221 1.02479 1.01594 0.95061 1.69822 1.52741 1.42903 0.97272 0.85688 0.79493 0.81248 0.77158 1.21643 1.21056 1.19380 1.22378 1.06411 0.92685 0.96837 1.23241 0.92557 1.01705 1.03781 1.23062 0.98227 0.95117 1.03501 1.74691 1.19134 1.04357 1.10848 1.81800 0.98162 1.03263 1.23266 1.50960 1.05129 1.08451 1.48572 1.22234 1.02457 0.73028 0.99176 1.22137 1.02039 1.02417 0.94692 1.22194 1.02141 1.02626 0.95031 0.86829 0.87246 0.89370 0.94786 0.88172 0.89312 0.93976 0.94203 0.80790 0.93267 0.86512 0.89024 0.86678 0.86410 0.89282 0.84103 0.92381 0.86784 0.91957 0.93089 0.86522 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.47 71.24 0.67 -1.12 16 2 C 0.13 3.32 7.02 41.72 0.29 3.61 16 3 C -0.13 -4.45 6.70 40.82 0.27 -4.17 16 4 C 0.59 22.20 7.37 86.69 0.64 22.84 16 5 O -0.56 -22.92 14.03 -3.99 -0.06 -22.98 16 6 N -0.58 -20.63 2.24 -826.38 -1.85 -22.49 16 7 C 0.08 2.69 8.75 127.77 1.12 3.81 16 8 C 0.17 5.69 2.58 44.99 0.12 5.81 16 9 H 0.09 3.29 6.90 -2.39 -0.02 3.28 16 10 C 0.15 5.97 4.19 86.38 0.36 6.33 16 11 N -0.76 -39.12 5.24 -343.44 -1.80 -40.92 16 12 C -0.22 -13.55 10.47 84.04 0.88 -12.67 16 13 H 0.07 4.36 8.06 -2.91 -0.02 4.33 16 14 C -0.05 -3.24 5.50 84.86 0.47 -2.77 16 15 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 16 Si 0.93 50.69 27.74 68.60 1.90 52.60 16 17 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 18 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 19 H -0.27 -14.28 6.52 99.48 0.65 -13.63 16 20 C -0.16 -4.15 4.99 -10.79 -0.05 -4.21 16 21 C -0.18 -3.94 9.44 30.62 0.29 -3.65 16 22 C -0.16 -3.51 9.94 30.62 0.30 -3.21 16 23 N -0.22 -7.30 8.78 -50.00 -0.44 -7.74 16 24 N -0.09 -2.54 13.67 37.02 0.51 -2.04 16 25 N -0.34 -7.78 3.28 -313.37 -1.03 -8.81 16 26 C 0.13 1.58 3.68 44.99 0.17 1.74 16 27 C -0.16 -1.40 9.47 71.98 0.68 -0.72 16 28 C -0.16 -1.94 9.47 71.98 0.68 -1.26 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.22 7.20 -2.38 -0.02 1.20 16 31 H 0.09 2.26 6.32 -2.39 -0.02 2.24 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 3.08 5.24 -2.39 -0.01 3.07 16 34 H 0.09 2.41 7.16 -2.38 -0.02 2.40 16 35 H 0.04 1.68 6.30 -2.39 -0.02 1.67 16 36 H 0.04 1.61 7.44 -2.38 -0.02 1.59 16 37 H 0.36 19.12 4.93 -92.71 -0.46 18.66 16 38 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 39 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.09 2.39 5.80 -2.39 -0.01 2.38 16 41 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.09 2.13 7.66 -2.39 -0.02 2.11 16 44 H 0.14 0.83 6.79 -2.39 -0.02 0.81 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.32 8.14 -2.39 -0.02 0.31 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -81.78 396.40 4.86 -76.92 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.44 Total: 29.79 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.89 Total: 10.35 kcal Atomic # 7 Polarization: -142.37 SS G_CDS: -4.31 Total: -146.68 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.90 Total: 52.60 kcal Total: -81.78 4.86 -76.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700732695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.332 kcal (2) G-P(sol) polarization free energy of solvation -81.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds