Wall clock time and date at job start Tue Mar 31 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36597 * 126.58042 * 2 1 4 4 C 1.47520 * 125.77120 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99954 * 6.34052 * 4 3 2 6 6 N 1.34778 * 120.00045 * 186.33757 * 4 3 2 7 7 C 1.46924 * 120.62968 * 6.80492 * 6 4 3 8 8 C 1.53195 * 108.89185 * 126.45989 * 7 6 4 9 9 C 1.53040 * 109.31463 * 54.56439 * 8 7 6 10 10 C 1.53043 * 109.53628 * 298.63988 * 9 8 7 11 11 C 1.46958 * 120.65219 * 186.62182 * 6 4 3 12 12 H 1.09004 * 109.46746 * 113.75818 * 11 6 4 13 13 C 1.52995 * 109.59803 * 353.39518 * 11 6 4 14 14 N 1.46503 * 109.46752 * 67.21700 * 13 11 6 15 15 C 1.36940 * 120.00149 * 175.64680 * 14 13 11 16 16 H 1.08001 * 119.99463 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46920 * 90.00431 * 19 17 15 21 21 H 1.48500 * 109.47071 * 210.00150 * 19 17 15 22 22 H 1.48502 * 109.47425 * 330.00641 * 19 17 15 23 23 N 1.34405 * 108.45637 * 180.24004 * 3 2 1 24 24 N 1.28764 * 109.52341 * 359.59232 * 23 3 2 25 25 N 1.34817 * 126.58037 * 180.02562 * 2 1 3 26 26 C 1.46499 * 126.59099 * 359.97438 * 25 2 1 27 27 C 1.53005 * 109.46913 * 120.00791 * 26 25 2 28 28 C 1.53001 * 109.47127 * 240.00126 * 26 25 2 29 29 H 1.08996 * 109.47053 * 90.02003 * 1 2 3 30 30 H 1.08999 * 109.46895 * 210.02293 * 1 2 3 31 31 H 1.08995 * 109.46706 * 330.02172 * 1 2 3 32 32 H 1.09001 * 109.58977 * 6.60606 * 7 6 4 33 33 H 1.09000 * 109.58863 * 246.31879 * 7 6 4 34 34 H 1.09005 * 109.49859 * 174.51515 * 8 7 6 35 35 H 1.08998 * 109.49790 * 294.61256 * 8 7 6 36 36 H 1.09004 * 109.45909 * 58.65051 * 9 8 7 37 37 H 1.08998 * 109.46468 * 178.62566 * 9 8 7 38 38 H 1.08999 * 109.49728 * 181.31488 * 10 9 8 39 39 H 1.09007 * 109.49199 * 301.37437 * 10 9 8 40 40 H 1.09001 * 109.47348 * 187.21135 * 13 11 6 41 41 H 1.08999 * 109.47353 * 307.22115 * 13 11 6 42 42 H 0.97002 * 120.00306 * 355.65288 * 14 13 11 43 43 H 0.96995 * 119.99978 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.47449 * 0.02562 * 26 25 2 45 45 H 1.09001 * 109.46963 * 180.02562 * 27 26 25 46 46 H 1.09009 * 109.46645 * 299.99499 * 27 26 25 47 47 H 1.08993 * 109.47362 * 59.99581 * 27 26 25 48 48 H 1.09000 * 109.47232 * 60.00017 * 28 26 25 49 49 H 1.08995 * 109.47336 * 180.02562 * 28 26 25 50 50 H 1.09007 * 109.47239 * 300.00558 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6921 2.7647 0.1153 6 7 2.7750 3.4965 -0.1293 7 6 4.1840 3.1966 -0.4185 8 6 4.6169 3.9917 -1.6543 9 6 4.3240 5.4768 -1.4288 10 6 2.8201 5.6772 -1.2278 11 6 2.3668 4.9011 0.0127 12 1 2.8337 5.3271 0.9009 13 6 0.8444 4.9827 0.1408 14 7 0.4280 4.3776 1.4083 15 6 -0.8882 4.4142 1.7848 16 1 -1.6192 4.8888 1.1469 17 6 -1.2829 3.8404 2.9855 18 7 -0.3921 3.2615 3.7625 19 14 -3.0784 3.8897 3.4986 20 1 -3.7746 2.6848 2.9801 21 1 -3.1692 3.9145 4.9806 22 1 -3.7187 5.1089 2.9428 23 7 3.5984 0.6788 -0.0053 24 7 3.6299 -0.6084 0.0000 25 7 2.3105 -1.0826 -0.0005 26 6 1.8863 -2.4849 -0.0006 27 6 2.4288 -3.1816 -1.2501 28 6 2.4295 -3.1821 1.2484 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3632 0.8902 0.5135 32 1 4.2983 2.1300 -0.6118 33 1 4.8007 3.4816 0.4339 34 1 5.6852 3.8527 -1.8205 35 1 4.0639 3.6400 -2.5252 36 1 4.8578 5.8218 -0.5432 37 1 4.6535 6.0478 -2.2968 38 1 2.6095 6.7378 -1.0906 39 1 2.2841 5.3101 -2.1032 40 1 0.5332 6.0270 0.1172 41 1 0.3809 4.4465 -0.6873 42 1 1.0845 3.9510 1.9811 43 1 -0.6679 2.8609 4.6017 44 1 0.7976 -2.5352 -0.0007 45 1 2.1128 -4.2248 -1.2504 46 1 2.0418 -2.6849 -2.1399 47 1 3.5176 -3.1313 -1.2504 48 1 2.0431 -2.6857 2.1386 49 1 2.1143 -4.2254 1.2481 50 1 3.5184 -3.1317 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713267114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:18 Heat of formation + Delta-G solvation = 114.950401 kcal Electronic energy + Delta-G solvation = -31338.404883 eV Core-core repulsion = 27405.061618 eV Total energy + Delta-G solvation = -3933.343265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.01724 -39.68780 -36.74302 -36.42930 -34.35202 -32.91153 -32.31304 -31.89111 -30.43752 -29.67915 -27.62092 -27.56721 -25.94314 -24.29915 -23.85268 -22.84943 -22.46890 -20.97512 -20.28443 -20.02431 -18.70776 -17.21144 -16.67769 -15.99004 -15.88521 -15.29339 -14.72012 -14.68140 -14.45236 -14.32958 -13.94754 -13.68710 -13.48233 -13.38476 -13.24902 -12.98903 -12.82700 -12.78083 -12.62394 -12.52195 -12.40094 -12.06710 -11.95301 -11.79263 -11.65246 -11.48119 -11.32244 -11.03957 -10.79979 -10.76022 -10.68745 -10.61155 -10.23774 -10.03722 -9.83891 -9.64235 -9.47331 -8.83528 -8.55605 -8.31790 -7.87334 -6.43912 -5.52552 -2.71336 1.45160 2.17715 2.20746 3.53712 3.57833 3.59371 3.60936 4.04295 4.20126 4.49099 4.54456 4.67145 4.76951 4.85719 5.02641 5.09453 5.12406 5.18581 5.20490 5.25890 5.32283 5.40115 5.40649 5.53087 5.67747 5.70415 5.71776 5.80173 5.81748 5.84528 5.86517 5.97734 6.03130 6.07182 6.13128 6.20731 6.26024 6.31347 6.37741 6.50751 6.63485 6.65095 6.77943 6.84295 7.10038 7.43687 7.89532 8.10784 8.32077 8.64954 9.07367 9.76178 10.37384 10.71991 11.70990 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.005565 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.833670 B = 5030.509314 C = 7863.329442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.121 3.879 3 C -0.083 4.083 4 C 0.557 3.443 5 O -0.440 6.440 6 N -0.602 5.602 7 C 0.087 3.913 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.126 4.126 11 C 0.143 3.857 12 H 0.067 0.933 13 C 0.160 3.840 14 N -0.693 5.693 15 C -0.203 4.203 16 H 0.065 0.935 17 C -0.022 4.022 18 N -0.937 5.937 19 Si 0.898 3.102 20 H -0.295 1.295 21 H -0.296 1.296 22 H -0.285 1.285 23 N -0.213 5.213 24 N -0.083 5.083 25 N -0.359 5.359 26 C 0.145 3.855 27 C -0.160 4.160 28 C -0.163 4.163 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.042 0.958 42 H 0.380 0.620 43 H 0.249 0.751 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 -9.789 -12.298 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.016 4.016 3 C -0.222 4.222 4 C 0.341 3.659 5 O -0.307 6.307 6 N -0.339 5.339 7 C -0.037 4.037 8 C -0.170 4.170 9 C -0.156 4.156 10 C -0.165 4.165 11 C 0.040 3.960 12 H 0.085 0.915 13 C 0.033 3.967 14 N -0.336 5.336 15 C -0.335 4.335 16 H 0.083 0.917 17 C -0.216 4.216 18 N -0.588 5.588 19 Si 0.731 3.269 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.211 1.211 23 N -0.086 5.086 24 N -0.061 5.061 25 N -0.148 5.148 26 C 0.043 3.957 27 C -0.218 4.218 28 C -0.220 4.220 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.214 0.786 43 H 0.059 0.941 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.616 -10.050 -12.219 18.515 hybrid contribution -1.581 -0.120 0.674 1.723 sum 8.035 -10.170 -11.545 17.357 Atomic orbital electron populations 1.20775 0.84831 1.06304 1.03837 1.21897 0.96205 0.86164 0.97318 1.21569 0.88279 0.96234 1.16139 1.16828 0.86312 0.81929 0.80850 1.91174 1.15226 1.80637 1.43696 1.47512 1.08345 1.05264 1.72790 1.22350 0.81552 1.03598 0.96169 1.21908 1.00695 0.95598 0.98803 1.21514 0.96396 0.96327 1.01332 1.21892 0.95794 1.00170 0.98599 1.21481 0.97551 0.80298 0.96690 0.91460 1.20907 0.88986 0.94894 0.91930 1.42325 1.06839 1.66197 1.18231 1.19163 0.85467 1.28006 1.00870 0.91690 1.24583 0.96812 1.02282 0.97948 1.69669 1.31849 1.44169 1.13145 0.86286 0.85897 0.77406 0.77293 1.22259 1.22267 1.21099 1.74249 1.19350 1.03505 1.11469 1.81793 0.96676 1.03977 1.23689 1.50456 1.06309 1.06921 1.51084 1.21546 1.00456 0.75772 0.97908 1.22134 1.03009 1.00638 0.95989 1.22150 1.03020 1.00634 0.96243 0.89876 0.91395 0.85405 0.85686 0.92584 0.91487 0.92122 0.91993 0.92356 0.91075 0.91660 0.96762 0.94073 0.78602 0.94141 0.87474 0.90229 0.91872 0.90853 0.91525 0.90237 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 9.48 36.01 0.34 -1.14 16 2 C 0.12 1.98 7.02 -81.87 -0.57 1.41 16 3 C -0.08 -1.54 6.71 -83.55 -0.56 -2.10 16 4 C 0.56 11.38 6.97 -12.48 -0.09 11.29 16 5 O -0.44 -10.24 8.37 5.28 0.04 -10.20 16 6 N -0.60 -10.90 2.98 -166.42 -0.50 -11.39 16 7 C 0.09 1.33 6.10 -3.71 -0.02 1.31 16 8 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 9 C -0.12 -1.41 5.88 -26.69 -0.16 -1.57 16 10 C -0.13 -1.76 5.37 -26.61 -0.14 -1.90 16 11 C 0.14 2.56 2.94 -67.58 -0.20 2.36 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C 0.16 3.47 4.87 -4.04 -0.02 3.45 16 14 N -0.69 -18.33 3.17 -59.91 -0.19 -18.52 16 15 C -0.20 -5.86 9.63 -15.06 -0.15 -6.01 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 18 N -0.94 -29.26 13.06 55.49 0.72 -28.54 16 19 Si 0.90 23.15 29.55 -169.99 -5.02 18.13 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 N -0.21 -3.74 8.76 32.85 0.29 -3.46 16 24 N -0.08 -1.34 13.67 60.35 0.82 -0.52 16 25 N -0.36 -5.07 3.28 -50.41 -0.17 -5.24 16 26 C 0.14 1.40 3.68 -67.93 -0.25 1.15 16 27 C -0.16 -1.24 9.47 37.16 0.35 -0.89 16 28 C -0.16 -1.44 9.47 37.16 0.35 -1.09 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.83 7.19 -51.93 -0.37 0.46 16 31 H 0.13 2.51 6.32 -51.93 -0.33 2.18 16 32 H 0.13 2.00 4.06 -85.54 -0.35 1.65 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.04 0.95 6.46 -51.93 -0.34 0.61 16 42 H 0.38 10.88 6.91 -40.82 -0.28 10.60 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.24 16 44 H 0.11 0.87 6.79 -51.93 -0.35 0.51 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -33.97 387.46 -7.85 -41.82 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.33 Total: 8.33 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.37 Total: 3.74 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: 0.99 Total: -67.66 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.04 Total: -10.20 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.97 -7.85 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713267114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.771 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds