Wall clock time and date at job start Tue Mar 31 2020 18:28:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.36597 * 126.58042 * 2 1
4 4 C 1.47520 * 125.77120 * 359.97438 * 3 2 1
5 5 O 1.21594 * 119.99954 * 6.34052 * 4 3 2
6 6 N 1.34778 * 120.00045 * 186.33757 * 4 3 2
7 7 C 1.46924 * 120.62968 * 6.80492 * 6 4 3
8 8 C 1.53195 * 108.89185 * 126.45989 * 7 6 4
9 9 C 1.53040 * 109.31463 * 54.56439 * 8 7 6
10 10 C 1.53043 * 109.53628 * 298.63988 * 9 8 7
11 11 C 1.46958 * 120.65219 * 186.62182 * 6 4 3
12 12 H 1.09004 * 109.46746 * 113.75818 * 11 6 4
13 13 C 1.52995 * 109.59803 * 353.39518 * 11 6 4
14 14 N 1.46503 * 109.46752 * 67.21700 * 13 11 6
15 15 C 1.36940 * 120.00149 * 175.64680 * 14 13 11
16 16 H 1.08001 * 119.99463 * 0.02562 * 15 14 13
17 17 C 1.38809 * 120.00053 * 179.97438 * 15 14 13
18 18 N 1.31616 * 120.00341 * 0.02562 * 17 15 14
19 19 Si 1.86802 * 119.99695 * 180.02562 * 17 15 14
20 20 H 1.48502 * 109.46920 * 90.00431 * 19 17 15
21 21 H 1.48500 * 109.47071 * 210.00150 * 19 17 15
22 22 H 1.48502 * 109.47425 * 330.00641 * 19 17 15
23 23 N 1.34405 * 108.45637 * 180.24004 * 3 2 1
24 24 N 1.28764 * 109.52341 * 359.59232 * 23 3 2
25 25 N 1.34817 * 126.58037 * 180.02562 * 2 1 3
26 26 C 1.46499 * 126.59099 * 359.97438 * 25 2 1
27 27 C 1.53005 * 109.46913 * 120.00791 * 26 25 2
28 28 C 1.53001 * 109.47127 * 240.00126 * 26 25 2
29 29 H 1.08996 * 109.47053 * 90.02003 * 1 2 3
30 30 H 1.08999 * 109.46895 * 210.02293 * 1 2 3
31 31 H 1.08995 * 109.46706 * 330.02172 * 1 2 3
32 32 H 1.09001 * 109.58977 * 6.60606 * 7 6 4
33 33 H 1.09000 * 109.58863 * 246.31879 * 7 6 4
34 34 H 1.09005 * 109.49859 * 174.51515 * 8 7 6
35 35 H 1.08998 * 109.49790 * 294.61256 * 8 7 6
36 36 H 1.09004 * 109.45909 * 58.65051 * 9 8 7
37 37 H 1.08998 * 109.46468 * 178.62566 * 9 8 7
38 38 H 1.08999 * 109.49728 * 181.31488 * 10 9 8
39 39 H 1.09007 * 109.49199 * 301.37437 * 10 9 8
40 40 H 1.09001 * 109.47348 * 187.21135 * 13 11 6
41 41 H 1.08999 * 109.47353 * 307.22115 * 13 11 6
42 42 H 0.97002 * 120.00306 * 355.65288 * 14 13 11
43 43 H 0.96995 * 119.99978 * 179.97438 * 18 17 15
44 44 H 1.08993 * 109.47449 * 0.02562 * 26 25 2
45 45 H 1.09001 * 109.46963 * 180.02562 * 27 26 25
46 46 H 1.09009 * 109.46645 * 299.99499 * 27 26 25
47 47 H 1.08993 * 109.47362 * 59.99581 * 27 26 25
48 48 H 1.09000 * 109.47232 * 60.00017 * 28 26 25
49 49 H 1.08995 * 109.47336 * 180.02562 * 28 26 25
50 50 H 1.09007 * 109.47239 * 300.00558 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3211 1.0969 0.0000
4 6 1.8738 2.5027 -0.0005
5 8 0.6921 2.7647 0.1153
6 7 2.7750 3.4965 -0.1293
7 6 4.1840 3.1966 -0.4185
8 6 4.6169 3.9917 -1.6543
9 6 4.3240 5.4768 -1.4288
10 6 2.8201 5.6772 -1.2278
11 6 2.3668 4.9011 0.0127
12 1 2.8337 5.3271 0.9009
13 6 0.8444 4.9827 0.1408
14 7 0.4280 4.3776 1.4083
15 6 -0.8882 4.4142 1.7848
16 1 -1.6192 4.8888 1.1469
17 6 -1.2829 3.8404 2.9855
18 7 -0.3921 3.2615 3.7625
19 14 -3.0784 3.8897 3.4986
20 1 -3.7746 2.6848 2.9801
21 1 -3.1692 3.9145 4.9806
22 1 -3.7187 5.1089 2.9428
23 7 3.5984 0.6788 -0.0053
24 7 3.6299 -0.6084 0.0000
25 7 2.3105 -1.0826 -0.0005
26 6 1.8863 -2.4849 -0.0006
27 6 2.4288 -3.1816 -1.2501
28 6 2.4295 -3.1821 1.2484
29 1 -0.3633 -0.0004 -1.0276
30 1 -0.3633 -0.8898 0.5142
31 1 -0.3632 0.8902 0.5135
32 1 4.2983 2.1300 -0.6118
33 1 4.8007 3.4816 0.4339
34 1 5.6852 3.8527 -1.8205
35 1 4.0639 3.6400 -2.5252
36 1 4.8578 5.8218 -0.5432
37 1 4.6535 6.0478 -2.2968
38 1 2.6095 6.7378 -1.0906
39 1 2.2841 5.3101 -2.1032
40 1 0.5332 6.0270 0.1172
41 1 0.3809 4.4465 -0.6873
42 1 1.0845 3.9510 1.9811
43 1 -0.6679 2.8609 4.6017
44 1 0.7976 -2.5352 -0.0007
45 1 2.1128 -4.2248 -1.2504
46 1 2.0418 -2.6849 -2.1399
47 1 3.5176 -3.1313 -1.2504
48 1 2.0431 -2.6857 2.1386
49 1 2.1143 -4.2254 1.2481
50 1 3.5184 -3.1317 1.2481
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713267114.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:28:17
Heat of formation + Delta-G solvation = 93.140587 kcal
Electronic energy + Delta-G solvation = -31339.350628 eV
Core-core repulsion = 27405.061618 eV
Total energy + Delta-G solvation = -3934.289009 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-43.29780 -41.14666 -38.11836 -37.41203 -36.24302 -34.07208 -33.84595 -33.47537
-31.73171 -31.35876 -28.85653 -28.28255 -27.57734 -25.87605 -24.97897 -24.20907
-24.16598 -22.43582 -21.48922 -21.13759 -20.08710 -19.02717 -18.04819 -17.27441
-17.15817 -16.72124 -16.59684 -15.83559 -15.72714 -15.58371 -15.24759 -15.18031
-15.02034 -14.79331 -14.46011 -14.28311 -14.05824 -13.99651 -13.97350 -13.58620
-13.49918 -13.20331 -13.14622 -13.12673 -12.91552 -12.76300 -12.67436 -12.53717
-12.38022 -12.10101 -12.02712 -11.94359 -11.77029 -11.67810 -11.32131 -11.16526
-10.86718 -10.84485 -10.06020 -9.93469 -9.37471 -8.53871 -7.77796 -4.96756
0.19430 0.78699 1.09895 1.47469 1.49720 1.57714 2.17439 2.53163
2.66141 3.24469 3.32326 3.55573 3.61267 3.77082 3.81508 3.87580
3.91632 3.98477 4.09458 4.16229 4.19769 4.38760 4.40760 4.50531
4.56145 4.60088 4.62851 4.65431 4.68660 4.69137 4.74230 4.83370
4.93925 4.99296 5.06813 5.12906 5.14586 5.16438 5.17449 5.20474
5.25080 5.36396 5.44534 5.54522 5.58924 5.63100 5.96340 6.41410
6.64795 6.98605 7.47513 7.55303 8.26477 8.50755 9.46753
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.008176 B = 0.005565 C = 0.003560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3423.833670 B = 5030.509314 C = 7863.329442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.090 4.090
2 C 0.119 3.881
3 C -0.115 4.115
4 C 0.555 3.445
5 O -0.482 6.482
6 N -0.602 5.602
7 C 0.083 3.917
8 C -0.124 4.124
9 C -0.112 4.112
10 C -0.117 4.117
11 C 0.145 3.855
12 H 0.058 0.942
13 C 0.164 3.836
14 N -0.702 5.702
15 C -0.203 4.203
16 H 0.065 0.935
17 C -0.081 4.081
18 N -0.975 5.975
19 Si 0.964 3.036
20 H -0.290 1.290
21 H -0.300 1.300
22 H -0.273 1.273
23 N -0.220 5.220
24 N -0.087 5.087
25 N -0.344 5.344
26 C 0.129 3.871
27 C -0.153 4.153
28 C -0.159 4.159
29 H 0.105 0.895
30 H 0.097 0.903
31 H 0.080 0.920
32 H 0.120 0.880
33 H 0.055 0.945
34 H 0.093 0.907
35 H 0.057 0.943
36 H 0.066 0.934
37 H 0.086 0.914
38 H 0.086 0.914
39 H 0.062 0.938
40 H 0.018 0.982
41 H 0.029 0.971
42 H 0.365 0.635
43 H 0.242 0.758
44 H 0.130 0.870
45 H 0.113 0.887
46 H 0.058 0.942
47 H 0.062 0.938
48 H 0.046 0.954
49 H 0.115 0.885
50 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.521 -10.864 -14.000 20.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.019 4.019
3 C -0.254 4.254
4 C 0.340 3.660
5 O -0.353 6.353
6 N -0.338 5.338
7 C -0.040 4.040
8 C -0.162 4.162
9 C -0.150 4.150
10 C -0.156 4.156
11 C 0.042 3.958
12 H 0.076 0.924
13 C 0.038 3.962
14 N -0.342 5.342
15 C -0.336 4.336
16 H 0.083 0.917
17 C -0.272 4.272
18 N -0.628 5.628
19 Si 0.795 3.205
20 H -0.218 1.218
21 H -0.227 1.227
22 H -0.199 1.199
23 N -0.093 5.093
24 N -0.065 5.065
25 N -0.132 5.132
26 C 0.030 3.970
27 C -0.210 4.210
28 C -0.216 4.216
29 H 0.123 0.877
30 H 0.116 0.884
31 H 0.099 0.901
32 H 0.138 0.862
33 H 0.073 0.927
34 H 0.112 0.888
35 H 0.076 0.924
36 H 0.084 0.916
37 H 0.105 0.895
38 H 0.105 0.895
39 H 0.081 0.919
40 H 0.036 0.964
41 H 0.046 0.954
42 H 0.197 0.803
43 H 0.051 0.949
44 H 0.147 0.853
45 H 0.132 0.868
46 H 0.077 0.923
47 H 0.081 0.919
48 H 0.066 0.934
49 H 0.134 0.866
50 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 10.146 -11.117 -13.977 20.540
hybrid contribution -1.657 0.088 1.127 2.006
sum 8.489 -11.030 -12.849 18.943
Atomic orbital electron populations
1.20668 0.83938 1.05314 1.04925 1.22074 0.96840 0.86405 0.96589
1.21535 0.89333 0.96070 1.18471 1.17229 0.86201 0.83071 0.79534
1.91152 1.16674 1.81473 1.45955 1.47687 1.09350 1.04968 1.71768
1.22514 0.79778 1.04036 0.97685 1.21870 1.02161 0.95397 0.96788
1.21505 0.94463 0.96224 1.02792 1.21845 0.97478 1.00202 0.96051
1.21440 0.94827 0.80966 0.98542 0.92447 1.20926 0.91740 0.94016
0.89507 1.42392 1.05705 1.66589 1.19560 1.19473 0.86623 1.26876
1.00639 0.91733 1.25296 1.00770 1.02850 0.98273 1.69848 1.33702
1.45882 1.13386 0.85251 0.81250 0.77722 0.76325 1.21817 1.22749
1.19861 1.74245 1.18982 1.04095 1.11951 1.81689 0.97914 1.03523
1.23417 1.50804 1.05117 1.08110 1.49156 1.22158 1.02006 0.73430
0.99423 1.22125 1.02192 1.02260 0.94472 1.22160 1.02237 1.02414
0.94830 0.87711 0.88444 0.90129 0.86249 0.92656 0.88844 0.92438
0.91570 0.89518 0.89528 0.91885 0.96425 0.95379 0.80327 0.94895
0.85270 0.86839 0.92262 0.91933 0.93449 0.86640 0.91903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.71 9.48 71.24 0.68 -2.04 16
2 C 0.12 3.94 7.02 41.72 0.29 4.23 16
3 C -0.11 -4.40 6.71 40.81 0.27 -4.13 16
4 C 0.56 23.67 6.97 86.69 0.60 24.27 16
5 O -0.48 -23.66 8.37 -4.01 -0.03 -23.69 16
6 N -0.60 -22.29 2.98 -798.69 -2.38 -24.67 16
7 C 0.08 2.50 6.10 86.36 0.53 3.03 16
8 C -0.12 -2.82 6.08 30.67 0.19 -2.63 16
9 C -0.11 -2.38 5.88 30.62 0.18 -2.20 16
10 C -0.12 -3.11 5.37 30.67 0.16 -2.94 16
11 C 0.15 5.28 2.94 44.97 0.13 5.41 16
12 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16
13 C 0.16 7.36 4.87 86.38 0.42 7.79 16
14 N -0.70 -38.70 3.17 -343.45 -1.09 -39.79 16
15 C -0.20 -12.12 9.63 84.03 0.81 -11.31 16
16 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16
17 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16
18 N -0.97 -63.10 13.06 21.65 0.28 -62.82 16
19 Si 0.96 48.77 29.55 68.60 2.03 50.80 16
20 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16
21 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16
22 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16
23 N -0.22 -7.85 8.76 -49.99 -0.44 -8.29 16
24 N -0.09 -2.79 13.67 37.02 0.51 -2.28 16
25 N -0.34 -9.44 3.28 -313.39 -1.03 -10.47 16
26 C 0.13 2.22 3.68 44.99 0.17 2.38 16
27 C -0.15 -1.94 9.47 71.98 0.68 -1.26 16
28 C -0.16 -2.50 9.47 71.98 0.68 -1.81 16
29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
30 H 0.10 2.27 7.19 -2.39 -0.02 2.25 16
31 H 0.08 3.33 6.32 -2.39 -0.02 3.32 16
32 H 0.12 3.83 4.06 -45.87 -0.19 3.65 16
33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16
35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
36 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16
37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16
38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
41 H 0.03 1.35 6.46 -2.39 -0.02 1.34 16
42 H 0.37 22.00 6.91 -92.71 -0.64 21.35 16
43 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16
44 H 0.13 1.68 6.79 -2.39 -0.02 1.67 16
45 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16
46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16
47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
48 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
49 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16
50 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
Total: -1.00 -77.85 387.46 4.23 -73.61
By element:
Atomic # 1 Polarization: 33.16 SS G_CDS: 0.13 Total: 33.29 kcal
Atomic # 6 Polarization: 8.06 SS G_CDS: 6.26 Total: 14.33 kcal
Atomic # 7 Polarization: -144.18 SS G_CDS: -4.15 Total: -148.32 kcal
Atomic # 8 Polarization: -23.66 SS G_CDS: -0.03 Total: -23.69 kcal
Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal
Total: -77.85 4.23 -73.61 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713267114.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 166.753 kcal
(2) G-P(sol) polarization free energy of solvation -77.845 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds