Wall clock time and date at job start Tue Mar 31 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36597 * 126.58042 * 2 1 4 4 C 1.47520 * 125.77120 * 359.97438 * 3 2 1 5 5 O 1.21594 * 119.99954 * 6.34052 * 4 3 2 6 6 N 1.34778 * 120.00045 * 186.33757 * 4 3 2 7 7 C 1.46924 * 120.62968 * 6.80492 * 6 4 3 8 8 C 1.53195 * 108.89185 * 126.45989 * 7 6 4 9 9 C 1.53040 * 109.31463 * 54.56439 * 8 7 6 10 10 C 1.53043 * 109.53628 * 298.63988 * 9 8 7 11 11 C 1.46958 * 120.65219 * 186.62182 * 6 4 3 12 12 H 1.09004 * 109.46746 * 113.75818 * 11 6 4 13 13 C 1.52995 * 109.59803 * 353.39518 * 11 6 4 14 14 N 1.46503 * 109.46752 * 67.21700 * 13 11 6 15 15 C 1.36940 * 120.00149 * 175.64680 * 14 13 11 16 16 H 1.08001 * 119.99463 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00341 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46920 * 90.00431 * 19 17 15 21 21 H 1.48500 * 109.47071 * 210.00150 * 19 17 15 22 22 H 1.48502 * 109.47425 * 330.00641 * 19 17 15 23 23 N 1.34405 * 108.45637 * 180.24004 * 3 2 1 24 24 N 1.28764 * 109.52341 * 359.59232 * 23 3 2 25 25 N 1.34817 * 126.58037 * 180.02562 * 2 1 3 26 26 C 1.46499 * 126.59099 * 359.97438 * 25 2 1 27 27 C 1.53005 * 109.46913 * 120.00791 * 26 25 2 28 28 C 1.53001 * 109.47127 * 240.00126 * 26 25 2 29 29 H 1.08996 * 109.47053 * 90.02003 * 1 2 3 30 30 H 1.08999 * 109.46895 * 210.02293 * 1 2 3 31 31 H 1.08995 * 109.46706 * 330.02172 * 1 2 3 32 32 H 1.09001 * 109.58977 * 6.60606 * 7 6 4 33 33 H 1.09000 * 109.58863 * 246.31879 * 7 6 4 34 34 H 1.09005 * 109.49859 * 174.51515 * 8 7 6 35 35 H 1.08998 * 109.49790 * 294.61256 * 8 7 6 36 36 H 1.09004 * 109.45909 * 58.65051 * 9 8 7 37 37 H 1.08998 * 109.46468 * 178.62566 * 9 8 7 38 38 H 1.08999 * 109.49728 * 181.31488 * 10 9 8 39 39 H 1.09007 * 109.49199 * 301.37437 * 10 9 8 40 40 H 1.09001 * 109.47348 * 187.21135 * 13 11 6 41 41 H 1.08999 * 109.47353 * 307.22115 * 13 11 6 42 42 H 0.97002 * 120.00306 * 355.65288 * 14 13 11 43 43 H 0.96995 * 119.99978 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.47449 * 0.02562 * 26 25 2 45 45 H 1.09001 * 109.46963 * 180.02562 * 27 26 25 46 46 H 1.09009 * 109.46645 * 299.99499 * 27 26 25 47 47 H 1.08993 * 109.47362 * 59.99581 * 27 26 25 48 48 H 1.09000 * 109.47232 * 60.00017 * 28 26 25 49 49 H 1.08995 * 109.47336 * 180.02562 * 28 26 25 50 50 H 1.09007 * 109.47239 * 300.00558 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6921 2.7647 0.1153 6 7 2.7750 3.4965 -0.1293 7 6 4.1840 3.1966 -0.4185 8 6 4.6169 3.9917 -1.6543 9 6 4.3240 5.4768 -1.4288 10 6 2.8201 5.6772 -1.2278 11 6 2.3668 4.9011 0.0127 12 1 2.8337 5.3271 0.9009 13 6 0.8444 4.9827 0.1408 14 7 0.4280 4.3776 1.4083 15 6 -0.8882 4.4142 1.7848 16 1 -1.6192 4.8888 1.1469 17 6 -1.2829 3.8404 2.9855 18 7 -0.3921 3.2615 3.7625 19 14 -3.0784 3.8897 3.4986 20 1 -3.7746 2.6848 2.9801 21 1 -3.1692 3.9145 4.9806 22 1 -3.7187 5.1089 2.9428 23 7 3.5984 0.6788 -0.0053 24 7 3.6299 -0.6084 0.0000 25 7 2.3105 -1.0826 -0.0005 26 6 1.8863 -2.4849 -0.0006 27 6 2.4288 -3.1816 -1.2501 28 6 2.4295 -3.1821 1.2484 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3632 0.8902 0.5135 32 1 4.2983 2.1300 -0.6118 33 1 4.8007 3.4816 0.4339 34 1 5.6852 3.8527 -1.8205 35 1 4.0639 3.6400 -2.5252 36 1 4.8578 5.8218 -0.5432 37 1 4.6535 6.0478 -2.2968 38 1 2.6095 6.7378 -1.0906 39 1 2.2841 5.3101 -2.1032 40 1 0.5332 6.0270 0.1172 41 1 0.3809 4.4465 -0.6873 42 1 1.0845 3.9510 1.9811 43 1 -0.6679 2.8609 4.6017 44 1 0.7976 -2.5352 -0.0007 45 1 2.1128 -4.2248 -1.2504 46 1 2.0418 -2.6849 -2.1399 47 1 3.5176 -3.1313 -1.2504 48 1 2.0431 -2.6857 2.1386 49 1 2.1143 -4.2254 1.2481 50 1 3.5184 -3.1317 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713267114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:17 Heat of formation + Delta-G solvation = 93.140587 kcal Electronic energy + Delta-G solvation = -31339.350628 eV Core-core repulsion = 27405.061618 eV Total energy + Delta-G solvation = -3934.289009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.29780 -41.14666 -38.11836 -37.41203 -36.24302 -34.07208 -33.84595 -33.47537 -31.73171 -31.35876 -28.85653 -28.28255 -27.57734 -25.87605 -24.97897 -24.20907 -24.16598 -22.43582 -21.48922 -21.13759 -20.08710 -19.02717 -18.04819 -17.27441 -17.15817 -16.72124 -16.59684 -15.83559 -15.72714 -15.58371 -15.24759 -15.18031 -15.02034 -14.79331 -14.46011 -14.28311 -14.05824 -13.99651 -13.97350 -13.58620 -13.49918 -13.20331 -13.14622 -13.12673 -12.91552 -12.76300 -12.67436 -12.53717 -12.38022 -12.10101 -12.02712 -11.94359 -11.77029 -11.67810 -11.32131 -11.16526 -10.86718 -10.84485 -10.06020 -9.93469 -9.37471 -8.53871 -7.77796 -4.96756 0.19430 0.78699 1.09895 1.47469 1.49720 1.57714 2.17439 2.53163 2.66141 3.24469 3.32326 3.55573 3.61267 3.77082 3.81508 3.87580 3.91632 3.98477 4.09458 4.16229 4.19769 4.38760 4.40760 4.50531 4.56145 4.60088 4.62851 4.65431 4.68660 4.69137 4.74230 4.83370 4.93925 4.99296 5.06813 5.12906 5.14586 5.16438 5.17449 5.20474 5.25080 5.36396 5.44534 5.54522 5.58924 5.63100 5.96340 6.41410 6.64795 6.98605 7.47513 7.55303 8.26477 8.50755 9.46753 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.005565 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.833670 B = 5030.509314 C = 7863.329442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.119 3.881 3 C -0.115 4.115 4 C 0.555 3.445 5 O -0.482 6.482 6 N -0.602 5.602 7 C 0.083 3.917 8 C -0.124 4.124 9 C -0.112 4.112 10 C -0.117 4.117 11 C 0.145 3.855 12 H 0.058 0.942 13 C 0.164 3.836 14 N -0.702 5.702 15 C -0.203 4.203 16 H 0.065 0.935 17 C -0.081 4.081 18 N -0.975 5.975 19 Si 0.964 3.036 20 H -0.290 1.290 21 H -0.300 1.300 22 H -0.273 1.273 23 N -0.220 5.220 24 N -0.087 5.087 25 N -0.344 5.344 26 C 0.129 3.871 27 C -0.153 4.153 28 C -0.159 4.159 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.029 0.971 42 H 0.365 0.635 43 H 0.242 0.758 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.115 0.885 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.521 -10.864 -14.000 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 C -0.254 4.254 4 C 0.340 3.660 5 O -0.353 6.353 6 N -0.338 5.338 7 C -0.040 4.040 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.156 4.156 11 C 0.042 3.958 12 H 0.076 0.924 13 C 0.038 3.962 14 N -0.342 5.342 15 C -0.336 4.336 16 H 0.083 0.917 17 C -0.272 4.272 18 N -0.628 5.628 19 Si 0.795 3.205 20 H -0.218 1.218 21 H -0.227 1.227 22 H -0.199 1.199 23 N -0.093 5.093 24 N -0.065 5.065 25 N -0.132 5.132 26 C 0.030 3.970 27 C -0.210 4.210 28 C -0.216 4.216 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.197 0.803 43 H 0.051 0.949 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.134 0.866 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.146 -11.117 -13.977 20.540 hybrid contribution -1.657 0.088 1.127 2.006 sum 8.489 -11.030 -12.849 18.943 Atomic orbital electron populations 1.20668 0.83938 1.05314 1.04925 1.22074 0.96840 0.86405 0.96589 1.21535 0.89333 0.96070 1.18471 1.17229 0.86201 0.83071 0.79534 1.91152 1.16674 1.81473 1.45955 1.47687 1.09350 1.04968 1.71768 1.22514 0.79778 1.04036 0.97685 1.21870 1.02161 0.95397 0.96788 1.21505 0.94463 0.96224 1.02792 1.21845 0.97478 1.00202 0.96051 1.21440 0.94827 0.80966 0.98542 0.92447 1.20926 0.91740 0.94016 0.89507 1.42392 1.05705 1.66589 1.19560 1.19473 0.86623 1.26876 1.00639 0.91733 1.25296 1.00770 1.02850 0.98273 1.69848 1.33702 1.45882 1.13386 0.85251 0.81250 0.77722 0.76325 1.21817 1.22749 1.19861 1.74245 1.18982 1.04095 1.11951 1.81689 0.97914 1.03523 1.23417 1.50804 1.05117 1.08110 1.49156 1.22158 1.02006 0.73430 0.99423 1.22125 1.02192 1.02260 0.94472 1.22160 1.02237 1.02414 0.94830 0.87711 0.88444 0.90129 0.86249 0.92656 0.88844 0.92438 0.91570 0.89518 0.89528 0.91885 0.96425 0.95379 0.80327 0.94895 0.85270 0.86839 0.92262 0.91933 0.93449 0.86640 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.48 71.24 0.68 -2.04 16 2 C 0.12 3.94 7.02 41.72 0.29 4.23 16 3 C -0.11 -4.40 6.71 40.81 0.27 -4.13 16 4 C 0.56 23.67 6.97 86.69 0.60 24.27 16 5 O -0.48 -23.66 8.37 -4.01 -0.03 -23.69 16 6 N -0.60 -22.29 2.98 -798.69 -2.38 -24.67 16 7 C 0.08 2.50 6.10 86.36 0.53 3.03 16 8 C -0.12 -2.82 6.08 30.67 0.19 -2.63 16 9 C -0.11 -2.38 5.88 30.62 0.18 -2.20 16 10 C -0.12 -3.11 5.37 30.67 0.16 -2.94 16 11 C 0.15 5.28 2.94 44.97 0.13 5.41 16 12 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 13 C 0.16 7.36 4.87 86.38 0.42 7.79 16 14 N -0.70 -38.70 3.17 -343.45 -1.09 -39.79 16 15 C -0.20 -12.12 9.63 84.03 0.81 -11.31 16 16 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 17 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 18 N -0.97 -63.10 13.06 21.65 0.28 -62.82 16 19 Si 0.96 48.77 29.55 68.60 2.03 50.80 16 20 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 21 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 22 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 23 N -0.22 -7.85 8.76 -49.99 -0.44 -8.29 16 24 N -0.09 -2.79 13.67 37.02 0.51 -2.28 16 25 N -0.34 -9.44 3.28 -313.39 -1.03 -10.47 16 26 C 0.13 2.22 3.68 44.99 0.17 2.38 16 27 C -0.15 -1.94 9.47 71.98 0.68 -1.26 16 28 C -0.16 -2.50 9.47 71.98 0.68 -1.81 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.10 2.27 7.19 -2.39 -0.02 2.25 16 31 H 0.08 3.33 6.32 -2.39 -0.02 3.32 16 32 H 0.12 3.83 4.06 -45.87 -0.19 3.65 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.03 1.35 6.46 -2.39 -0.02 1.34 16 42 H 0.37 22.00 6.91 -92.71 -0.64 21.35 16 43 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.13 1.68 6.79 -2.39 -0.02 1.67 16 45 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -77.85 387.46 4.23 -73.61 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.13 Total: 33.29 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.26 Total: 14.33 kcal Atomic # 7 Polarization: -144.18 SS G_CDS: -4.15 Total: -148.32 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.03 Total: -23.69 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -77.85 4.23 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713267114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.753 kcal (2) G-P(sol) polarization free energy of solvation -77.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds