Wall clock time and date at job start Tue Mar 31 2020 18:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36589 * 126.58143 * 2 1 4 4 C 1.47521 * 125.77114 * 359.95009 * 3 2 1 5 5 O 1.21595 * 120.00107 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00235 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00300 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47090 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.46770 * 179.97438 * 8 7 6 10 10 H 1.08992 * 110.64709 * 305.70233 * 9 8 7 11 11 C 1.55160 * 110.71895 * 182.56038 * 9 8 7 12 12 C 1.54912 * 101.58069 * 206.13904 * 11 9 8 13 13 N 1.47422 * 104.83303 * 37.01116 * 12 11 9 14 14 C 1.36934 * 125.64721 * 155.90789 * 13 12 11 15 15 H 1.08001 * 120.00270 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00261 * 359.97198 * 14 13 12 17 17 N 1.31622 * 119.99933 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00417 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46818 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47078 * 119.99917 * 18 16 14 21 21 H 1.48498 * 109.47594 * 240.00176 * 18 16 14 22 22 C 1.47315 * 108.73628 * 335.71171 * 13 12 11 23 23 N 1.34404 * 108.46243 * 179.97438 * 3 2 1 24 24 N 1.28764 * 109.52064 * 0.02562 * 23 3 2 25 25 N 1.34817 * 126.57910 * 179.97438 * 2 1 3 26 26 C 1.46503 * 126.59595 * 0.02562 * 25 2 1 27 27 C 1.52996 * 109.47145 * 120.00185 * 26 25 2 28 28 C 1.53006 * 109.47149 * 240.00667 * 26 25 2 29 29 H 1.09002 * 109.47057 * 90.02318 * 1 2 3 30 30 H 1.08998 * 109.47205 * 210.01986 * 1 2 3 31 31 H 1.08996 * 109.47232 * 330.02207 * 1 2 3 32 32 H 0.97005 * 119.99831 * 359.97438 * 6 4 3 33 33 H 1.09006 * 109.47221 * 300.00011 * 7 6 4 34 34 H 1.09004 * 109.46963 * 59.99528 * 7 6 4 35 35 H 1.08992 * 109.47304 * 300.00127 * 8 7 6 36 36 H 1.08998 * 109.47133 * 60.00482 * 8 7 6 37 37 H 1.09003 * 111.00529 * 324.21263 * 11 9 8 38 38 H 1.09000 * 111.00430 * 88.02659 * 11 9 8 39 39 H 1.08996 * 110.36643 * 155.84790 * 12 11 9 40 40 H 1.09002 * 110.36456 * 278.06214 * 12 11 9 41 41 H 0.96998 * 120.00276 * 179.97438 * 17 16 14 42 42 H 1.08999 * 110.07191 * 241.87504 * 22 13 12 43 43 H 1.09005 * 109.85116 * 120.60984 * 22 13 12 44 44 H 1.08997 * 109.46770 * 359.97438 * 26 25 2 45 45 H 1.09006 * 109.47149 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.46924 * 300.00101 * 27 26 25 47 47 H 1.08997 * 109.46997 * 60.00489 * 27 26 25 48 48 H 1.08992 * 109.47165 * 59.99647 * 28 26 25 49 49 H 1.08996 * 109.47100 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.46474 * 299.99787 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 -0.0010 5 8 0.6860 2.7628 -0.0015 6 7 2.7817 3.4987 -0.0014 7 6 2.3376 4.8947 -0.0030 8 6 3.5576 5.8180 -0.0026 9 6 3.0937 7.2760 -0.0049 10 1 2.4111 7.4608 -0.8342 11 6 4.3089 8.2386 -0.0693 12 6 3.7348 9.5097 0.6049 13 7 2.8651 9.0050 1.6830 14 6 2.5155 9.6928 2.8142 15 1 1.8694 9.2333 3.5477 16 6 2.9914 10.9807 3.0185 17 7 3.7791 11.5406 2.1249 18 14 2.5139 11.9193 4.5613 19 1 1.6269 11.0740 5.4003 20 1 3.7373 12.2657 5.3285 21 1 1.7984 13.1640 4.1821 22 6 2.4301 7.6400 1.3401 23 7 3.5984 0.6788 0.0006 24 7 3.6299 -0.6084 0.0004 25 7 2.3104 -1.0826 0.0005 26 6 1.8864 -2.4849 0.0006 27 6 2.4296 -3.1821 -1.2483 28 6 2.4285 -3.1816 1.2503 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5135 32 1 3.7293 3.2912 -0.0007 33 1 1.7383 5.0844 -0.8936 34 1 1.7372 5.0860 0.8864 35 1 4.1565 5.6283 0.8881 36 1 4.1583 5.6269 -0.8918 37 1 5.1516 7.8425 0.4974 38 1 4.5947 8.4386 -1.1020 39 1 4.5402 10.1157 1.0198 40 1 3.1548 10.0904 -0.1123 41 1 4.1114 12.4407 2.2674 42 1 1.3453 7.6074 1.2389 43 1 2.7534 6.9432 2.1134 44 1 0.7975 -2.5352 0.0007 45 1 2.1137 -4.2254 -1.2484 46 1 2.0433 -2.6857 -2.1385 47 1 3.5184 -3.1318 -1.2478 48 1 2.0415 -2.6850 2.1399 49 1 2.1127 -4.2248 1.2506 50 1 3.5174 -3.1313 1.2507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713739096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:04 Heat of formation + Delta-G solvation = 66.830556 kcal Electronic energy + Delta-G solvation = -28341.305146 eV Core-core repulsion = 24405.875248 eV Total energy + Delta-G solvation = -3935.429898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.58321 -39.45747 -37.72579 -36.86176 -35.22875 -33.38654 -32.96122 -31.49987 -30.60501 -28.98854 -28.16301 -28.00171 -26.46245 -24.77346 -24.35633 -23.27608 -21.97133 -20.79006 -20.34758 -20.00420 -19.23309 -17.92803 -16.87986 -16.72039 -16.54452 -15.85640 -15.55926 -15.08948 -14.84049 -14.56090 -14.50029 -14.04654 -13.95252 -13.61102 -13.54387 -13.42252 -13.38005 -12.92031 -12.83278 -12.45950 -12.28768 -12.20632 -12.18446 -11.86975 -11.84891 -11.62916 -11.51555 -11.36966 -11.00639 -10.84780 -10.71719 -10.53160 -10.23732 -10.07584 -9.91761 -9.82724 -9.68993 -9.44503 -9.39627 -8.98694 -8.58596 -6.74861 -5.58504 -2.99516 0.83608 1.51450 1.62904 3.10119 3.18815 3.43969 3.49364 3.52005 3.75158 3.86637 4.12515 4.23442 4.24416 4.48326 4.55115 4.67621 4.86004 4.90749 5.01105 5.02761 5.04414 5.11512 5.19087 5.28355 5.36740 5.39490 5.45874 5.54650 5.56554 5.66942 5.68113 5.72250 5.86875 5.96478 6.10032 6.11603 6.27166 6.31135 6.45984 6.48212 6.68408 6.72088 6.84957 7.06379 7.39614 7.60473 7.70659 7.73669 7.93323 8.12814 8.44038 9.29703 9.90681 10.56499 11.45449 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024883 B = 0.001797 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.986310 B =15577.408762 C =15928.870634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 C -0.106 4.106 4 C 0.603 3.397 5 O -0.538 6.538 6 N -0.712 5.712 7 C 0.118 3.882 8 C -0.117 4.117 9 C -0.097 4.097 10 H 0.072 0.928 11 C -0.139 4.139 12 C 0.151 3.849 13 N -0.606 5.606 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.015 4.015 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.139 3.861 23 N -0.204 5.204 24 N -0.065 5.065 25 N -0.358 5.358 26 C 0.143 3.857 27 C -0.163 4.163 28 C -0.164 4.164 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.407 0.593 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.010 0.990 41 H 0.250 0.750 42 H 0.020 0.980 43 H 0.024 0.976 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -31.933 -7.885 33.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 C -0.245 4.245 4 C 0.387 3.613 5 O -0.415 6.415 6 N -0.363 5.363 7 C -0.004 4.004 8 C -0.155 4.155 9 C -0.116 4.116 10 H 0.090 0.910 11 C -0.177 4.177 12 C 0.026 3.974 13 N -0.332 5.332 14 C -0.347 4.347 15 H 0.095 0.905 16 C -0.210 4.210 17 N -0.572 5.572 18 Si 0.744 3.256 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.013 3.987 23 N -0.078 5.078 24 N -0.044 5.044 25 N -0.145 5.145 26 C 0.042 3.958 27 C -0.220 4.220 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.242 0.758 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.041 0.959 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.061 -31.953 -7.770 33.026 hybrid contribution -0.796 0.487 0.731 1.185 sum -3.856 -31.466 -7.039 32.474 Atomic orbital electron populations 1.20738 0.84740 1.05430 1.04666 1.21935 0.96262 0.86364 0.96906 1.21242 0.89075 0.95442 1.18763 1.16711 0.85621 0.82480 0.76498 1.90773 1.15904 1.83621 1.51215 1.45862 1.10170 1.06294 1.73941 1.21561 0.97693 0.78301 1.02872 1.21799 0.96628 0.94575 1.02545 1.22091 0.98379 0.92445 0.98733 0.90964 1.23041 0.96514 0.98460 0.99720 1.21911 0.95280 0.91556 0.88614 1.44602 1.56027 1.11530 1.21023 1.19148 1.24026 0.95793 0.95723 0.90502 1.24786 1.00345 0.97150 0.98680 1.69820 1.38008 1.14748 1.34659 0.86006 0.77544 0.79752 0.82277 1.20559 1.21818 1.21820 1.21432 0.95999 0.88273 0.93001 1.74618 1.19026 1.04251 1.09857 1.81921 0.96324 1.03211 1.22951 1.50645 1.06305 1.07255 1.50281 1.21661 1.00513 0.75235 0.98384 1.22157 1.03252 1.00901 0.95731 1.22169 1.03293 1.00920 0.95767 0.89019 0.90784 0.86776 0.75767 0.91245 0.90713 0.91057 0.91525 0.92176 0.92502 0.87722 0.97190 0.93891 0.96190 0.95858 0.87242 0.89848 0.91700 0.90644 0.91658 0.89846 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.41 36.00 0.34 -0.32 16 2 C 0.12 1.19 7.02 -81.88 -0.57 0.61 16 3 C -0.11 -1.30 6.99 -83.55 -0.58 -1.88 16 4 C 0.60 8.20 7.82 -12.48 -0.10 8.10 16 5 O -0.54 -8.33 14.72 5.28 0.08 -8.25 16 6 N -0.71 -9.00 5.55 -61.35 -0.34 -9.34 16 7 C 0.12 1.59 5.54 -4.04 -0.02 1.57 16 8 C -0.12 -1.60 4.72 -26.73 -0.13 -1.72 16 9 C -0.10 -1.67 2.95 -88.78 -0.26 -1.94 16 10 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 11 C -0.14 -2.64 6.54 -24.58 -0.16 -2.80 16 12 C 0.15 3.76 5.89 -2.53 -0.01 3.75 16 13 N -0.61 -16.01 3.40 -169.84 -0.58 -16.59 16 14 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 17 N -0.92 -27.52 10.09 55.49 0.56 -26.96 16 18 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.14 2.96 6.13 -2.90 -0.02 2.95 16 23 N -0.20 -2.60 12.04 32.85 0.40 -2.20 16 24 N -0.06 -0.74 13.67 60.35 0.82 0.08 16 25 N -0.36 -3.08 3.28 -50.41 -0.17 -3.24 16 26 C 0.14 0.65 3.68 -67.93 -0.25 0.40 16 27 C -0.16 -0.61 9.47 37.16 0.35 -0.25 16 28 C -0.16 -0.64 9.47 37.16 0.35 -0.29 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.29 7.18 -51.93 -0.37 -0.09 16 31 H 0.11 1.00 6.43 -51.93 -0.33 0.67 16 32 H 0.41 4.60 8.16 -40.82 -0.33 4.27 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.12 7.58 -51.93 -0.39 0.72 16 35 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 44 H 0.11 0.25 6.79 -51.93 -0.35 -0.10 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -34.41 402.78 -7.87 -42.27 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.37 Total: -0.66 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.70 Total: -58.25 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.41 -7.87 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713739096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.105 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds