Wall clock time and date at job start Tue Mar 31 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36599 * 126.57776 * 2 1 4 4 C 1.47519 * 125.76973 * 359.97388 * 3 2 1 5 5 O 1.21597 * 120.00409 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00080 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00440 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47442 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47138 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88826 * 57.42335 * 9 8 7 11 11 C 1.55159 * 111.03830 * 181.32899 * 9 8 7 12 12 C 1.54318 * 102.94169 * 153.58739 * 11 9 8 13 13 N 1.47292 * 107.31103 * 337.81949 * 12 11 9 14 14 C 1.36935 * 125.79485 * 178.92456 * 13 12 11 15 15 H 1.08000 * 119.99782 * 174.82802 * 14 13 12 16 16 C 1.38813 * 119.99748 * 354.82496 * 14 13 12 17 17 N 1.31620 * 120.00341 * 7.02995 * 16 14 13 18 18 Si 1.86808 * 119.99539 * 187.02565 * 16 14 13 19 19 H 1.48502 * 109.46896 * 94.99260 * 18 16 14 20 20 H 1.48501 * 109.46951 * 214.98619 * 18 16 14 21 21 H 1.48492 * 109.47136 * 334.98799 * 18 16 14 22 22 C 1.47424 * 108.55382 * 358.92245 * 13 12 11 23 23 N 1.34401 * 108.45683 * 180.24328 * 3 2 1 24 24 N 1.28757 * 109.52632 * 359.58527 * 23 3 2 25 25 N 1.34812 * 126.58516 * 179.97438 * 2 1 3 26 26 C 1.46503 * 126.59303 * 0.02562 * 25 2 1 27 27 C 1.52995 * 109.47429 * 119.99166 * 26 25 2 28 28 C 1.52996 * 109.47039 * 240.00098 * 26 25 2 29 29 H 1.09000 * 109.47004 * 89.97686 * 1 2 3 30 30 H 1.08995 * 109.46638 * 209.97502 * 1 2 3 31 31 H 1.08998 * 109.46824 * 329.97723 * 1 2 3 32 32 H 0.97000 * 119.99803 * 0.02562 * 6 4 3 33 33 H 1.09004 * 109.47208 * 59.99749 * 7 6 4 34 34 H 1.09000 * 109.47180 * 300.00159 * 7 6 4 35 35 H 1.08992 * 109.46983 * 59.99798 * 8 7 6 36 36 H 1.09003 * 109.46760 * 299.99588 * 8 7 6 37 37 H 1.08999 * 110.71715 * 271.95309 * 11 9 8 38 38 H 1.08997 * 110.71630 * 35.04670 * 11 9 8 39 39 H 1.09004 * 109.88141 * 97.22592 * 12 11 9 40 40 H 1.09001 * 109.88609 * 218.23118 * 12 11 9 41 41 H 0.96997 * 119.99818 * 179.97438 * 17 16 14 42 42 H 1.08992 * 110.36982 * 265.26424 * 22 13 12 43 43 H 1.09001 * 110.36388 * 143.04866 * 22 13 12 44 44 H 1.09006 * 109.46942 * 359.97438 * 26 25 2 45 45 H 1.09010 * 109.46964 * 60.00434 * 27 26 25 46 46 H 1.09004 * 109.47471 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47588 * 300.00581 * 27 26 25 48 48 H 1.08998 * 109.47093 * 180.02562 * 28 26 25 49 49 H 1.09010 * 109.46836 * 299.99249 * 28 26 25 50 50 H 1.08998 * 109.47751 * 59.99537 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0006 6 7 2.7816 3.4988 -0.0010 7 6 2.3375 4.8948 -0.0010 8 6 3.5574 5.8182 -0.0022 9 6 3.0935 7.2762 -0.0015 10 1 2.4541 7.4802 0.8573 11 6 4.3041 8.2460 -0.0363 12 6 3.7164 9.5088 -0.7006 13 7 2.5296 9.0896 -1.4656 14 6 1.7082 9.9152 -2.1858 15 1 0.9100 9.4973 -2.7813 16 6 1.9015 11.2894 -2.1505 17 7 2.9540 11.7905 -1.5393 18 14 0.6678 12.4275 -2.9706 19 1 -0.3179 12.8968 -1.9639 20 1 1.3799 13.5957 -3.5481 21 1 -0.0391 11.6947 -4.0515 22 6 2.3732 7.6303 -1.3265 23 7 3.5984 0.6789 -0.0054 24 7 3.6300 -0.6082 0.0000 25 7 2.3106 -1.0825 0.0005 26 6 1.8866 -2.4848 0.0006 27 6 2.4296 -3.1820 -1.2484 28 6 2.4289 -3.1815 1.2501 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 3.7292 3.2914 -0.0014 33 1 1.7380 5.0854 0.8892 34 1 1.7373 5.0852 -0.8907 35 1 4.1565 5.6276 -0.8925 36 1 4.1579 5.6280 0.8874 37 1 4.6503 8.4669 0.9733 38 1 5.1131 7.8314 -0.6378 39 1 3.4281 10.2300 0.0642 40 1 4.4535 9.9530 -1.3696 41 1 3.0892 12.7507 -1.5149 42 1 2.8453 7.1166 -2.1639 43 1 1.3174 7.3659 -1.2667 44 1 0.7977 -2.5352 0.0007 45 1 3.5185 -3.1317 -1.2481 46 1 2.1145 -4.2255 -1.2481 47 1 2.0432 -2.6856 -2.1386 48 1 2.1139 -4.2249 1.2500 49 1 3.5178 -3.1312 1.2504 50 1 2.0420 -2.6849 2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713739097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:09 Heat of formation + Delta-G solvation = 65.560429 kcal Electronic energy + Delta-G solvation = -28327.933794 eV Core-core repulsion = 24392.448819 eV Total energy + Delta-G solvation = -3935.484975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.58703 -39.45499 -37.71968 -36.86512 -35.22934 -33.38406 -32.93604 -31.50542 -30.61890 -29.00360 -28.17048 -28.00417 -26.46017 -24.76229 -24.35894 -23.28358 -21.99066 -20.79441 -20.34156 -19.91499 -19.35339 -17.93868 -16.87225 -16.71071 -16.53972 -15.82647 -15.51287 -15.09072 -14.79758 -14.53375 -14.49907 -14.02629 -13.98907 -13.62203 -13.54212 -13.48852 -13.42047 -12.92424 -12.83512 -12.39734 -12.29084 -12.23213 -12.16039 -11.89558 -11.84985 -11.77266 -11.48346 -11.36856 -10.99594 -10.81978 -10.71854 -10.53425 -10.21248 -10.07158 -9.89573 -9.79255 -9.67740 -9.56628 -9.44392 -8.98388 -8.50628 -6.73847 -5.65222 -2.96579 0.83391 1.51187 1.62580 3.10032 3.18794 3.45206 3.50343 3.52279 3.74865 3.86435 4.12240 4.23217 4.24226 4.48156 4.56812 4.67374 4.85606 4.90469 4.99394 5.02323 5.04097 5.11659 5.19432 5.28197 5.35798 5.39312 5.45467 5.55214 5.56232 5.67445 5.70659 5.74656 5.83493 5.95759 6.10294 6.11479 6.21809 6.29839 6.45477 6.48073 6.63823 6.68191 6.81812 7.06189 7.39472 7.63811 7.72010 7.73345 7.90186 8.13013 8.33821 9.29544 9.90648 10.58309 11.47267 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.001792 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.199003 B =15617.947514 C =16211.101392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 C -0.106 4.106 4 C 0.603 3.397 5 O -0.538 6.538 6 N -0.713 5.713 7 C 0.119 3.881 8 C -0.117 4.117 9 C -0.100 4.100 10 H 0.076 0.924 11 C -0.138 4.138 12 C 0.176 3.824 13 N -0.607 5.607 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.921 5.921 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.139 3.861 23 N -0.205 5.205 24 N -0.065 5.065 25 N -0.358 5.358 26 C 0.143 3.857 27 C -0.163 4.163 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.038 0.962 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 -32.944 6.025 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 C -0.245 4.245 4 C 0.387 3.613 5 O -0.414 6.414 6 N -0.363 5.363 7 C -0.004 4.004 8 C -0.155 4.155 9 C -0.120 4.120 10 H 0.094 0.906 11 C -0.176 4.176 12 C 0.051 3.949 13 N -0.333 5.333 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.013 3.987 23 N -0.078 5.078 24 N -0.044 5.044 25 N -0.145 5.145 26 C 0.042 3.958 27 C -0.221 4.221 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.242 0.758 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.665 -32.923 5.964 33.466 hybrid contribution -1.054 0.665 -0.447 1.324 sum -1.719 -32.258 5.517 32.772 Atomic orbital electron populations 1.20742 0.84726 1.05363 1.04754 1.21943 0.96270 0.86365 0.96873 1.21246 0.89064 0.95449 1.18765 1.16712 0.85631 0.82472 0.76525 1.90779 1.15895 1.83607 1.51138 1.45861 1.10138 1.06312 1.73994 1.21550 0.97658 0.78224 1.02989 1.21748 0.96640 0.94700 1.02424 1.22262 0.98113 0.91875 0.99709 0.90573 1.22889 0.96587 0.98059 1.00111 1.21176 0.88353 0.91070 0.94307 1.44548 1.29695 1.01044 1.58045 1.19079 1.08157 0.87414 1.20781 0.90460 1.24818 0.98188 0.96667 1.00894 1.69984 1.27409 1.11197 1.48291 0.86131 0.80615 0.80634 0.78631 1.21674 1.21844 1.20661 1.21616 0.97213 0.86635 0.93237 1.74608 1.19039 1.04258 1.09873 1.81916 0.96335 1.03208 1.22976 1.50642 1.06302 1.07256 1.50282 1.21661 1.00524 0.75234 0.98377 1.22161 1.03257 1.00903 0.95757 1.22166 1.03275 1.00919 0.95751 0.88952 0.90808 0.86794 0.75811 0.91176 0.90653 0.91204 0.91557 0.92361 0.92549 0.93573 0.94312 0.93862 0.96547 0.94386 0.87235 0.90649 0.89844 0.91652 0.89850 0.90650 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.41 36.01 0.34 -0.32 16 2 C 0.12 1.18 7.02 -81.87 -0.57 0.61 16 3 C -0.11 -1.28 6.99 -83.55 -0.58 -1.87 16 4 C 0.60 8.14 7.82 -12.48 -0.10 8.04 16 5 O -0.54 -8.31 14.72 5.28 0.08 -8.24 16 6 N -0.71 -8.86 5.55 -61.35 -0.34 -9.20 16 7 C 0.12 1.58 5.52 -4.04 -0.02 1.56 16 8 C -0.12 -1.55 4.85 -26.73 -0.13 -1.68 16 9 C -0.10 -1.71 3.07 -88.47 -0.27 -1.98 16 10 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 11 C -0.14 -2.59 6.42 -24.90 -0.16 -2.75 16 12 C 0.18 4.37 5.39 -2.92 -0.02 4.35 16 13 N -0.61 -15.99 3.40 -169.86 -0.58 -16.57 16 14 C -0.23 -6.50 10.27 -15.06 -0.15 -6.66 16 15 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 16 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 17 N -0.92 -27.75 10.38 55.49 0.58 -27.17 16 18 Si 0.91 22.65 29.56 -169.99 -5.02 17.63 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.14 2.93 5.89 -2.53 -0.01 2.92 16 23 N -0.20 -2.57 12.04 32.85 0.40 -2.17 16 24 N -0.07 -0.74 13.67 60.35 0.82 0.09 16 25 N -0.36 -3.04 3.28 -50.40 -0.17 -3.21 16 26 C 0.14 0.64 3.68 -67.93 -0.25 0.39 16 27 C -0.16 -0.62 9.47 37.15 0.35 -0.27 16 28 C -0.16 -0.60 9.47 37.16 0.35 -0.25 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.28 7.18 -51.93 -0.37 -0.10 16 31 H 0.11 0.98 6.43 -51.93 -0.33 0.65 16 32 H 0.41 4.48 8.16 -40.82 -0.33 4.15 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.11 7.45 -51.93 -0.39 0.73 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 39 H 0.05 1.27 7.31 -51.93 -0.38 0.89 16 40 H 0.04 1.06 7.62 -51.93 -0.40 0.67 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 43 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 44 H 0.11 0.25 6.79 -51.93 -0.35 -0.11 16 45 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 49 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 50 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -34.74 403.52 -7.91 -42.65 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.42 Total: -1.60 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.33 Total: 1.73 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.71 Total: -58.24 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.74 -7.91 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713739097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.206 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds