Wall clock time and date at job start Tue Mar 31 2020 18:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36599 * 126.57776 * 2 1 4 4 C 1.47519 * 125.76973 * 359.97388 * 3 2 1 5 5 O 1.21597 * 120.00409 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00080 * 180.02562 * 4 3 2 7 7 C 1.46495 * 120.00440 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47442 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47138 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.88826 * 57.42335 * 9 8 7 11 11 C 1.55159 * 111.03830 * 181.32899 * 9 8 7 12 12 C 1.54318 * 102.94169 * 153.58739 * 11 9 8 13 13 N 1.47292 * 107.31103 * 337.81949 * 12 11 9 14 14 C 1.36935 * 125.79485 * 178.92456 * 13 12 11 15 15 H 1.08000 * 119.99782 * 174.82802 * 14 13 12 16 16 C 1.38813 * 119.99748 * 354.82496 * 14 13 12 17 17 N 1.31620 * 120.00341 * 7.02995 * 16 14 13 18 18 Si 1.86808 * 119.99539 * 187.02565 * 16 14 13 19 19 H 1.48502 * 109.46896 * 94.99260 * 18 16 14 20 20 H 1.48501 * 109.46951 * 214.98619 * 18 16 14 21 21 H 1.48492 * 109.47136 * 334.98799 * 18 16 14 22 22 C 1.47424 * 108.55382 * 358.92245 * 13 12 11 23 23 N 1.34401 * 108.45683 * 180.24328 * 3 2 1 24 24 N 1.28757 * 109.52632 * 359.58527 * 23 3 2 25 25 N 1.34812 * 126.58516 * 179.97438 * 2 1 3 26 26 C 1.46503 * 126.59303 * 0.02562 * 25 2 1 27 27 C 1.52995 * 109.47429 * 119.99166 * 26 25 2 28 28 C 1.52996 * 109.47039 * 240.00098 * 26 25 2 29 29 H 1.09000 * 109.47004 * 89.97686 * 1 2 3 30 30 H 1.08995 * 109.46638 * 209.97502 * 1 2 3 31 31 H 1.08998 * 109.46824 * 329.97723 * 1 2 3 32 32 H 0.97000 * 119.99803 * 0.02562 * 6 4 3 33 33 H 1.09004 * 109.47208 * 59.99749 * 7 6 4 34 34 H 1.09000 * 109.47180 * 300.00159 * 7 6 4 35 35 H 1.08992 * 109.46983 * 59.99798 * 8 7 6 36 36 H 1.09003 * 109.46760 * 299.99588 * 8 7 6 37 37 H 1.08999 * 110.71715 * 271.95309 * 11 9 8 38 38 H 1.08997 * 110.71630 * 35.04670 * 11 9 8 39 39 H 1.09004 * 109.88141 * 97.22592 * 12 11 9 40 40 H 1.09001 * 109.88609 * 218.23118 * 12 11 9 41 41 H 0.96997 * 119.99818 * 179.97438 * 17 16 14 42 42 H 1.08992 * 110.36982 * 265.26424 * 22 13 12 43 43 H 1.09001 * 110.36388 * 143.04866 * 22 13 12 44 44 H 1.09006 * 109.46942 * 359.97438 * 26 25 2 45 45 H 1.09010 * 109.46964 * 60.00434 * 27 26 25 46 46 H 1.09004 * 109.47471 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47588 * 300.00581 * 27 26 25 48 48 H 1.08998 * 109.47093 * 180.02562 * 28 26 25 49 49 H 1.09010 * 109.46836 * 299.99249 * 28 26 25 50 50 H 1.08998 * 109.47751 * 59.99537 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7628 -0.0006 6 7 2.7816 3.4988 -0.0010 7 6 2.3375 4.8948 -0.0010 8 6 3.5574 5.8182 -0.0022 9 6 3.0935 7.2762 -0.0015 10 1 2.4541 7.4802 0.8573 11 6 4.3041 8.2460 -0.0363 12 6 3.7164 9.5088 -0.7006 13 7 2.5296 9.0896 -1.4656 14 6 1.7082 9.9152 -2.1858 15 1 0.9100 9.4973 -2.7813 16 6 1.9015 11.2894 -2.1505 17 7 2.9540 11.7905 -1.5393 18 14 0.6678 12.4275 -2.9706 19 1 -0.3179 12.8968 -1.9639 20 1 1.3799 13.5957 -3.5481 21 1 -0.0391 11.6947 -4.0515 22 6 2.3732 7.6303 -1.3265 23 7 3.5984 0.6789 -0.0054 24 7 3.6300 -0.6082 0.0000 25 7 2.3106 -1.0825 0.0005 26 6 1.8866 -2.4848 0.0006 27 6 2.4296 -3.1820 -1.2484 28 6 2.4289 -3.1815 1.2501 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3632 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 3.7292 3.2914 -0.0014 33 1 1.7380 5.0854 0.8892 34 1 1.7373 5.0852 -0.8907 35 1 4.1565 5.6276 -0.8925 36 1 4.1579 5.6280 0.8874 37 1 4.6503 8.4669 0.9733 38 1 5.1131 7.8314 -0.6378 39 1 3.4281 10.2300 0.0642 40 1 4.4535 9.9530 -1.3696 41 1 3.0892 12.7507 -1.5149 42 1 2.8453 7.1166 -2.1639 43 1 1.3174 7.3659 -1.2667 44 1 0.7977 -2.5352 0.0007 45 1 3.5185 -3.1317 -1.2481 46 1 2.1145 -4.2255 -1.2481 47 1 2.0432 -2.6856 -2.1386 48 1 2.1139 -4.2249 1.2500 49 1 3.5178 -3.1312 1.2504 50 1 2.0420 -2.6849 2.1399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713739097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:07 Heat of formation + Delta-G solvation = 41.758237 kcal Electronic energy + Delta-G solvation = -28328.965934 eV Core-core repulsion = 24392.448819 eV Total energy + Delta-G solvation = -3936.517115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.34811 -40.50099 -39.34090 -37.37205 -36.48438 -34.75330 -33.98571 -32.70139 -31.83872 -30.68477 -29.02644 -28.27943 -27.95394 -26.55024 -25.02864 -24.40277 -23.15831 -21.81222 -21.63522 -21.17770 -20.63701 -18.83604 -18.70878 -17.45843 -17.30764 -16.98704 -16.81122 -16.53935 -16.04606 -15.59983 -15.48100 -15.22686 -15.00400 -14.88829 -14.28701 -14.06383 -14.02338 -13.98314 -13.83879 -13.63389 -13.29687 -13.24290 -13.19704 -13.06185 -12.97605 -12.78735 -12.65346 -12.53555 -12.42931 -12.21453 -11.99122 -11.94635 -11.79744 -11.57237 -11.36819 -11.30842 -11.16318 -11.06718 -10.67846 -10.33175 -9.96431 -8.86820 -7.85387 -5.19050 0.10947 0.60440 1.03831 1.44849 1.47301 1.56166 2.13026 2.21818 2.50237 3.14860 3.30719 3.32675 3.54441 3.67631 3.72335 3.80772 3.82441 3.97699 4.00904 4.10650 4.17080 4.34995 4.40278 4.53525 4.59759 4.63027 4.63247 4.65002 4.71167 4.72143 4.75198 4.77957 4.86046 4.92682 5.01880 5.10092 5.15510 5.18003 5.19444 5.22787 5.27537 5.42174 5.46377 5.55325 5.56591 5.71108 5.80538 6.21899 6.42875 6.90453 7.11654 7.14343 7.79929 8.45684 9.25863 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.001792 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.199003 B =15617.947514 C =16211.101392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.130 3.870 3 C -0.132 4.132 4 C 0.601 3.399 5 O -0.563 6.563 6 N -0.706 5.706 7 C 0.125 3.875 8 C -0.101 4.101 9 C -0.083 4.083 10 H 0.076 0.924 11 C -0.123 4.123 12 C 0.180 3.820 13 N -0.631 5.631 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.950 5.950 18 Si 0.978 3.022 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.268 1.268 22 C 0.133 3.867 23 N -0.223 5.223 24 N -0.085 5.085 25 N -0.346 5.346 26 C 0.131 3.869 27 C -0.160 4.160 28 C -0.160 4.160 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.415 0.585 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.001 0.999 41 H 0.246 0.754 42 H 0.022 0.978 43 H 0.037 0.963 44 H 0.142 0.858 45 H 0.057 0.943 46 H 0.112 0.888 47 H 0.057 0.943 48 H 0.112 0.888 49 H 0.057 0.943 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -35.947 6.405 36.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.386 3.614 5 O -0.442 6.442 6 N -0.357 5.357 7 C 0.002 3.998 8 C -0.139 4.139 9 C -0.103 4.103 10 H 0.094 0.906 11 C -0.161 4.161 12 C 0.055 3.945 13 N -0.357 5.357 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.261 4.261 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.193 1.193 22 C 0.008 3.992 23 N -0.096 5.096 24 N -0.064 5.064 25 N -0.133 5.133 26 C 0.032 3.968 27 C -0.217 4.217 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.251 0.749 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.028 0.972 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.130 0.870 49 H 0.076 0.924 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.542 -35.991 6.345 36.578 hybrid contribution -0.805 1.479 -0.590 1.784 sum -2.346 -34.512 5.755 35.067 Atomic orbital electron populations 1.20834 0.82619 1.06219 1.05635 1.22347 0.97416 0.85929 0.95215 1.21229 0.89673 0.95383 1.20888 1.16923 0.85354 0.83192 0.75940 1.90759 1.16839 1.84133 1.52430 1.45759 1.10513 1.05783 1.73646 1.21372 0.97492 0.78842 1.02102 1.21593 0.96670 0.91513 1.04151 1.22134 0.96795 0.94095 0.97294 0.90573 1.22759 0.97215 0.95181 1.00993 1.20989 0.87383 0.93391 0.92748 1.44901 1.29877 1.03166 1.57790 1.19473 1.08487 0.88310 1.20984 0.90233 1.25687 1.00041 0.98226 1.02168 1.70207 1.29001 1.10980 1.49755 0.85067 0.78179 0.78284 0.77884 1.21354 1.22021 1.19277 1.21823 0.97858 0.83873 0.95607 1.74567 1.19530 1.04914 1.10619 1.81826 0.98101 1.02854 1.23612 1.50967 1.05176 1.08513 1.48610 1.22199 1.02421 0.73117 0.99046 1.22165 1.02063 1.02492 0.95022 1.22169 1.02088 1.02492 0.94990 0.87876 0.87181 0.88666 0.74884 0.91414 0.92349 0.90477 0.88813 0.89956 0.90775 0.97150 0.98058 0.94432 0.96030 0.94501 0.84094 0.92420 0.86929 0.92383 0.86950 0.92417 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.41 71.24 0.67 -0.40 16 2 C 0.13 2.31 7.02 41.72 0.29 2.60 16 3 C -0.13 -3.13 6.99 40.82 0.29 -2.85 16 4 C 0.60 15.99 7.82 86.69 0.68 16.67 16 5 O -0.56 -17.34 14.72 -4.02 -0.06 -17.40 16 6 N -0.71 -16.88 5.55 -466.28 -2.59 -19.47 16 7 C 0.13 3.18 5.52 86.38 0.48 3.66 16 8 C -0.10 -2.42 4.85 30.59 0.15 -2.27 16 9 C -0.08 -2.73 3.07 -9.40 -0.03 -2.76 16 10 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 11 C -0.12 -4.45 6.42 31.78 0.20 -4.24 16 12 C 0.18 9.20 5.39 86.68 0.47 9.67 16 13 N -0.63 -33.91 3.40 -691.31 -2.35 -36.27 16 14 C -0.24 -14.30 10.27 84.03 0.86 -13.44 16 15 H 0.08 4.49 7.84 -2.91 -0.02 4.47 16 16 C -0.07 -4.05 5.48 84.86 0.46 -3.59 16 17 N -0.95 -59.23 10.38 21.65 0.22 -59.00 16 18 Si 0.98 47.40 29.56 68.60 2.03 49.43 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 22 C 0.13 5.59 5.89 86.86 0.51 6.10 16 23 N -0.22 -5.54 12.04 -50.00 -0.60 -6.14 16 24 N -0.08 -1.88 13.67 37.02 0.51 -1.37 16 25 N -0.35 -5.34 3.28 -313.38 -1.03 -6.37 16 26 C 0.13 0.82 3.68 44.99 0.17 0.99 16 27 C -0.16 -0.85 9.47 71.98 0.68 -0.17 16 28 C -0.16 -0.79 9.47 71.98 0.68 -0.11 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.41 7.18 -2.39 -0.02 0.39 16 31 H 0.09 1.54 6.43 -2.39 -0.02 1.52 16 32 H 0.41 8.60 8.16 -92.71 -0.76 7.84 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.69 7.45 -2.39 -0.02 1.68 16 35 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 39 H 0.01 0.59 7.31 -2.38 -0.02 0.57 16 40 H 0.00 0.07 7.62 -2.39 -0.02 0.05 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 43 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 44 H 0.14 0.03 6.79 -2.38 -0.02 0.01 16 45 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 47 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -79.23 403.52 2.87 -76.37 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.18 Total: 10.37 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.56 Total: 9.85 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -5.84 Total: -128.62 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.40 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -79.23 2.87 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713739097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.123 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds