Wall clock time and date at job start Tue Mar 31 2020 19:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47138 * 2 1 4 4 C 1.39677 * 126.06628 * 125.26956 * 3 2 1 5 5 C 1.38409 * 105.35670 * 180.10342 * 4 3 2 6 6 C 1.47162 * 126.88265 * 179.91017 * 5 4 3 7 7 O 1.21623 * 120.00130 * 185.00847 * 6 5 4 8 8 N 1.34784 * 120.00173 * 5.01582 * 6 5 4 9 9 C 1.46494 * 119.99868 * 184.90991 * 8 6 5 10 10 C 1.53002 * 109.47083 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47415 * 179.97438 * 10 9 8 12 12 C 1.46902 * 111.00264 * 169.99811 * 11 10 9 13 13 C 1.53236 * 109.34093 * 172.74766 * 12 11 10 14 14 N 1.47070 * 108.52452 * 53.82980 * 13 12 11 15 15 C 1.36938 * 120.88311 * 128.79299 * 14 13 12 16 16 H 1.08001 * 120.00007 * 210.63758 * 15 14 13 17 17 C 1.38813 * 120.00076 * 30.63708 * 15 14 13 18 18 N 1.31623 * 119.99779 * 10.01600 * 17 15 14 19 19 Si 1.86797 * 120.00177 * 190.02251 * 17 15 14 20 20 H 1.48496 * 109.47068 * 89.99431 * 19 17 15 21 21 H 1.48503 * 109.46999 * 209.99871 * 19 17 15 22 22 H 1.48508 * 109.46855 * 329.99697 * 19 17 15 23 23 C 1.47084 * 118.23686 * 308.81397 * 14 13 12 24 24 C 1.46898 * 111.00249 * 45.69669 * 11 10 9 25 25 N 1.36598 * 106.23176 * 359.65561 * 5 4 3 26 26 C 1.46502 * 125.18759 * 180.20683 * 25 5 4 27 27 N 1.28440 * 109.61997 * 0.22229 * 25 5 4 28 28 H 1.08995 * 109.47497 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47067 * 300.00281 * 1 2 3 30 30 H 1.08996 * 109.47136 * 59.99480 * 1 2 3 31 31 H 1.09001 * 109.46791 * 239.99651 * 2 1 3 32 32 H 1.08996 * 109.47136 * 120.00520 * 2 1 3 33 33 H 1.08002 * 127.32572 * 0.02562 * 4 3 2 34 34 H 0.97001 * 119.99374 * 4.89770 * 8 6 5 35 35 H 1.09003 * 109.47807 * 59.99720 * 9 8 6 36 36 H 1.08998 * 109.46943 * 299.99300 * 9 8 6 37 37 H 1.09007 * 109.47287 * 59.99164 * 10 9 8 38 38 H 1.09007 * 109.47001 * 300.00177 * 10 9 8 39 39 H 1.09001 * 109.49384 * 52.78508 * 12 11 10 40 40 H 1.08998 * 109.49048 * 292.70760 * 12 11 10 41 41 H 1.09001 * 109.62879 * 173.54017 * 13 12 11 42 42 H 1.09001 * 109.62441 * 293.92121 * 13 12 11 43 43 H 0.96998 * 119.99531 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.62789 * 170.89039 * 23 14 13 45 45 H 1.08996 * 109.63049 * 291.47836 * 23 14 13 46 46 H 1.09004 * 109.49394 * 67.29196 * 24 11 10 47 47 H 1.09004 * 109.51034 * 307.23103 * 24 11 10 48 48 H 1.08993 * 109.47361 * 84.38938 * 26 25 5 49 49 H 1.09005 * 109.46562 * 204.39279 * 26 25 5 50 50 H 1.09000 * 109.47280 * 324.38529 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9211 1.9787 0.9218 5 6 3.0843 3.2942 0.5236 6 6 3.9256 4.3145 1.1692 7 8 3.9071 5.4619 0.7662 8 7 4.7170 3.9775 2.2069 9 6 5.4723 5.0117 2.9181 10 6 6.2832 4.3674 4.0443 11 7 7.0411 5.4043 4.7571 12 6 7.6428 4.8666 5.9847 13 6 8.5678 5.9215 6.6007 14 7 7.8052 7.1667 6.7759 15 6 7.7878 7.8166 7.9811 16 1 6.9183 8.3858 8.2752 17 6 8.8876 7.7439 8.8249 18 7 10.0157 7.2217 8.3921 19 14 8.7668 8.3870 10.5745 20 1 8.3170 7.2941 11.4736 21 1 10.0983 8.8747 11.0156 22 1 7.7889 9.5036 10.6250 23 6 7.0612 7.6952 5.6224 24 6 6.1954 6.5705 5.0449 25 7 2.3125 3.4540 -0.5920 26 6 2.1828 4.6960 -1.3581 27 7 1.7175 2.3493 -0.8667 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3819 1.4884 1.7666 34 1 4.7861 3.0501 2.4828 35 1 4.7809 5.7412 3.3402 36 1 6.1476 5.5109 2.2233 37 1 6.9746 3.6377 3.6226 38 1 5.6075 3.8684 4.7390 39 1 8.2188 3.9725 5.7460 40 1 6.8556 4.6137 6.6949 41 1 8.9271 5.5729 7.5690 42 1 9.4149 6.0976 5.9377 43 1 10.7843 7.1713 8.9816 44 1 6.4243 8.5192 5.9439 45 1 7.7616 8.0444 4.8638 46 1 5.4284 6.2939 5.7683 47 1 5.7213 6.9123 4.1248 48 1 3.0037 4.7704 -2.0712 49 1 1.2341 4.6943 -1.8949 50 1 2.2139 5.5473 -0.6781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713812352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:10 Heat of formation + Delta-G solvation = 73.332277 kcal Electronic energy + Delta-G solvation = -28524.440612 eV Core-core repulsion = 24589.292649 eV Total energy + Delta-G solvation = -3935.147962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.88111 -39.71975 -38.26975 -35.69457 -35.05444 -34.07985 -32.23251 -31.56068 -31.10388 -30.12103 -28.62550 -27.24534 -26.06185 -23.87885 -23.76760 -23.26112 -22.44039 -21.46261 -21.06805 -19.62919 -19.10012 -17.97779 -16.94681 -16.68815 -16.49922 -15.88969 -15.57040 -15.07400 -14.84998 -14.52907 -14.43574 -14.35801 -14.15865 -14.05316 -13.76908 -13.56204 -13.36089 -13.19774 -12.99703 -12.81553 -12.53580 -12.44587 -11.83989 -11.73703 -11.62920 -11.41632 -11.38637 -11.00038 -10.88080 -10.77701 -10.48753 -10.39536 -10.28836 -10.05547 -9.79548 -9.65702 -9.52654 -9.23758 -9.17537 -8.52254 -7.90379 -6.61506 -5.78524 -3.25653 0.94418 2.03907 2.21345 2.87961 2.92298 3.36479 3.43129 3.44586 4.07364 4.18060 4.41291 4.49015 4.54898 4.77069 4.83062 4.86348 4.94704 4.97073 5.05825 5.08501 5.21554 5.32426 5.37638 5.39505 5.41836 5.45663 5.55566 5.74259 5.77712 5.83605 5.87307 5.87830 5.95312 6.09660 6.12003 6.16981 6.20629 6.32288 6.41640 6.52176 6.67967 6.93085 7.10458 7.23110 7.50821 7.61905 7.70058 7.72279 7.79826 7.84572 8.45929 9.21954 9.83021 10.43335 11.29994 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.001841 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.894046 B =15202.910342 C =15684.920123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.186 4.186 5 C -0.035 4.035 6 C 0.591 3.409 7 O -0.538 6.538 8 N -0.711 5.711 9 C 0.117 3.883 10 C 0.044 3.956 11 N -0.527 5.527 12 C 0.036 3.964 13 C 0.179 3.821 14 N -0.595 5.595 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.148 3.852 24 C 0.034 3.966 25 N -0.256 5.256 26 C 0.086 3.914 27 N -0.274 5.274 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.090 0.910 42 H 0.027 0.973 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 -14.171 -17.514 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.215 4.215 5 C -0.164 4.164 6 C 0.376 3.624 7 O -0.415 6.415 8 N -0.363 5.363 9 C -0.006 4.006 10 C -0.085 4.085 11 N -0.253 5.253 12 C -0.093 4.093 13 C 0.053 3.947 14 N -0.319 5.319 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.022 3.978 24 C -0.095 4.095 25 N -0.043 5.043 26 C -0.054 4.054 27 N -0.108 5.108 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.178 0.822 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.849 -12.789 -19.012 27.860 hybrid contribution -0.082 -0.533 2.251 2.315 sum -15.931 -13.322 -16.761 26.687 Atomic orbital electron populations 1.21715 0.94560 1.01721 1.02468 1.19880 0.96230 0.88312 1.03124 1.21987 1.00065 0.96741 0.94286 1.22133 1.03836 0.92361 1.03182 1.21384 1.03616 0.96515 0.94868 1.16855 0.79247 0.86405 0.79905 1.90808 1.66822 1.20176 1.63738 1.45635 1.45934 1.12110 1.32577 1.21661 0.94899 0.89878 0.94171 1.22260 0.96013 0.95341 0.94909 1.62040 1.32558 1.06140 1.24524 1.22949 0.98327 0.99204 0.88827 1.20866 0.90623 0.83698 0.99550 1.44070 1.57003 1.23823 1.06990 1.19191 0.97907 1.27675 0.93422 0.91797 1.25171 0.94771 1.00211 0.99399 1.69966 1.01201 1.48923 1.34920 0.86245 0.76890 0.78671 0.84658 1.21487 1.21644 1.20447 1.20994 0.93692 0.92975 0.90190 1.22810 0.95144 0.92869 0.98724 1.45562 1.30160 1.09539 1.19047 1.22357 1.04274 0.81731 0.97054 1.73108 1.19699 0.92676 1.25311 0.92233 0.92702 0.92175 0.90431 0.89948 0.82203 0.76242 0.90564 0.89959 0.90486 0.94796 0.92032 0.95570 0.89220 0.95463 0.93573 0.92579 0.95536 0.95335 0.91323 0.89654 0.88725 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.87 37.16 0.37 -0.55 16 2 C -0.04 -0.23 6.51 -27.89 -0.18 -0.42 16 3 C 0.03 0.24 6.49 -82.47 -0.54 -0.30 16 4 C -0.19 -1.66 10.42 -38.98 -0.41 -2.06 16 5 C -0.04 -0.38 6.96 -82.06 -0.57 -0.95 16 6 C 0.59 7.01 7.79 -12.63 -0.10 6.91 16 7 O -0.54 -7.84 14.80 5.26 0.08 -7.76 16 8 N -0.71 -7.13 5.54 -61.47 -0.34 -7.47 16 9 C 0.12 1.40 4.93 -4.04 -0.02 1.38 16 10 C 0.04 0.55 5.38 -3.83 -0.02 0.53 16 11 N -0.53 -8.92 4.78 -234.32 -1.12 -10.04 16 12 C 0.04 0.68 5.58 -3.70 -0.02 0.66 16 13 C 0.18 4.25 5.36 -3.61 -0.02 4.24 16 14 N -0.60 -15.02 3.03 -172.02 -0.52 -15.54 16 15 C -0.25 -6.92 9.62 -15.06 -0.14 -7.06 16 16 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 17 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 18 N -0.91 -26.12 11.03 55.49 0.61 -25.51 16 19 Si 0.91 21.61 29.57 -169.99 -5.03 16.58 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 24 C 0.03 0.59 5.04 -3.70 -0.02 0.57 16 25 N -0.26 -2.76 3.75 -63.88 -0.24 -3.00 16 26 C 0.09 0.70 10.72 59.85 0.64 1.34 16 27 N -0.27 -3.01 11.87 33.64 0.40 -2.61 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.16 0.94 7.62 -52.49 -0.40 0.54 16 34 H 0.40 2.95 7.54 -40.82 -0.31 2.64 16 35 H 0.08 0.99 6.18 -51.93 -0.32 0.67 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 2.36 6.20 -51.93 -0.32 2.04 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 1.05 5.73 -51.93 -0.30 0.76 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.11 0.98 6.54 -51.93 -0.34 0.64 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -32.94 398.07 -9.58 -42.52 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.28 Total: -0.57 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.14 Total: 7.40 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -1.21 Total: -64.17 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.08 Total: -7.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.94 -9.58 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713812352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.852 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds