Wall clock time and date at job start Tue Mar 31 2020 19:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47138 * 2 1 4 4 C 1.39677 * 126.06628 * 125.26956 * 3 2 1 5 5 C 1.38409 * 105.35670 * 180.10342 * 4 3 2 6 6 C 1.47162 * 126.88265 * 179.91017 * 5 4 3 7 7 O 1.21623 * 120.00130 * 185.00847 * 6 5 4 8 8 N 1.34784 * 120.00173 * 5.01582 * 6 5 4 9 9 C 1.46494 * 119.99868 * 184.90991 * 8 6 5 10 10 C 1.53002 * 109.47083 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47415 * 179.97438 * 10 9 8 12 12 C 1.46902 * 111.00264 * 169.99811 * 11 10 9 13 13 C 1.53236 * 109.34093 * 172.74766 * 12 11 10 14 14 N 1.47070 * 108.52452 * 53.82980 * 13 12 11 15 15 C 1.36938 * 120.88311 * 128.79299 * 14 13 12 16 16 H 1.08001 * 120.00007 * 210.63758 * 15 14 13 17 17 C 1.38813 * 120.00076 * 30.63708 * 15 14 13 18 18 N 1.31623 * 119.99779 * 10.01600 * 17 15 14 19 19 Si 1.86797 * 120.00177 * 190.02251 * 17 15 14 20 20 H 1.48496 * 109.47068 * 89.99431 * 19 17 15 21 21 H 1.48503 * 109.46999 * 209.99871 * 19 17 15 22 22 H 1.48508 * 109.46855 * 329.99697 * 19 17 15 23 23 C 1.47084 * 118.23686 * 308.81397 * 14 13 12 24 24 C 1.46898 * 111.00249 * 45.69669 * 11 10 9 25 25 N 1.36598 * 106.23176 * 359.65561 * 5 4 3 26 26 C 1.46502 * 125.18759 * 180.20683 * 25 5 4 27 27 N 1.28440 * 109.61997 * 0.22229 * 25 5 4 28 28 H 1.08995 * 109.47497 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47067 * 300.00281 * 1 2 3 30 30 H 1.08996 * 109.47136 * 59.99480 * 1 2 3 31 31 H 1.09001 * 109.46791 * 239.99651 * 2 1 3 32 32 H 1.08996 * 109.47136 * 120.00520 * 2 1 3 33 33 H 1.08002 * 127.32572 * 0.02562 * 4 3 2 34 34 H 0.97001 * 119.99374 * 4.89770 * 8 6 5 35 35 H 1.09003 * 109.47807 * 59.99720 * 9 8 6 36 36 H 1.08998 * 109.46943 * 299.99300 * 9 8 6 37 37 H 1.09007 * 109.47287 * 59.99164 * 10 9 8 38 38 H 1.09007 * 109.47001 * 300.00177 * 10 9 8 39 39 H 1.09001 * 109.49384 * 52.78508 * 12 11 10 40 40 H 1.08998 * 109.49048 * 292.70760 * 12 11 10 41 41 H 1.09001 * 109.62879 * 173.54017 * 13 12 11 42 42 H 1.09001 * 109.62441 * 293.92121 * 13 12 11 43 43 H 0.96998 * 119.99531 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.62789 * 170.89039 * 23 14 13 45 45 H 1.08996 * 109.63049 * 291.47836 * 23 14 13 46 46 H 1.09004 * 109.49394 * 67.29196 * 24 11 10 47 47 H 1.09004 * 109.51034 * 307.23103 * 24 11 10 48 48 H 1.08993 * 109.47361 * 84.38938 * 26 25 5 49 49 H 1.09005 * 109.46562 * 204.39279 * 26 25 5 50 50 H 1.09000 * 109.47280 * 324.38529 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9211 1.9787 0.9218 5 6 3.0843 3.2942 0.5236 6 6 3.9256 4.3145 1.1692 7 8 3.9071 5.4619 0.7662 8 7 4.7170 3.9775 2.2069 9 6 5.4723 5.0117 2.9181 10 6 6.2832 4.3674 4.0443 11 7 7.0411 5.4043 4.7571 12 6 7.6428 4.8666 5.9847 13 6 8.5678 5.9215 6.6007 14 7 7.8052 7.1667 6.7759 15 6 7.7878 7.8166 7.9811 16 1 6.9183 8.3858 8.2752 17 6 8.8876 7.7439 8.8249 18 7 10.0157 7.2217 8.3921 19 14 8.7668 8.3870 10.5745 20 1 8.3170 7.2941 11.4736 21 1 10.0983 8.8747 11.0156 22 1 7.7889 9.5036 10.6250 23 6 7.0612 7.6952 5.6224 24 6 6.1954 6.5705 5.0449 25 7 2.3125 3.4540 -0.5920 26 6 2.1828 4.6960 -1.3581 27 7 1.7175 2.3493 -0.8667 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.3819 1.4884 1.7666 34 1 4.7861 3.0501 2.4828 35 1 4.7809 5.7412 3.3402 36 1 6.1476 5.5109 2.2233 37 1 6.9746 3.6377 3.6226 38 1 5.6075 3.8684 4.7390 39 1 8.2188 3.9725 5.7460 40 1 6.8556 4.6137 6.6949 41 1 8.9271 5.5729 7.5690 42 1 9.4149 6.0976 5.9377 43 1 10.7843 7.1713 8.9816 44 1 6.4243 8.5192 5.9439 45 1 7.7616 8.0444 4.8638 46 1 5.4284 6.2939 5.7683 47 1 5.7213 6.9123 4.1248 48 1 3.0037 4.7704 -2.0712 49 1 1.2341 4.6943 -1.8949 50 1 2.2139 5.5473 -0.6781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713812352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:09 Heat of formation + Delta-G solvation = 49.969284 kcal Electronic energy + Delta-G solvation = -28525.453707 eV Core-core repulsion = 24589.292649 eV Total energy + Delta-G solvation = -3936.161058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.59941 -40.68283 -39.69762 -36.96064 -35.83697 -35.38066 -33.38587 -32.76075 -32.13323 -31.62869 -29.96732 -27.96544 -27.58196 -25.36980 -24.44910 -24.31020 -23.94608 -22.61748 -21.93932 -20.86510 -20.34449 -18.80176 -18.66052 -17.54494 -17.44284 -16.92680 -16.78107 -16.53780 -16.00137 -15.75739 -15.51321 -15.31953 -15.11786 -15.04590 -14.97153 -14.85590 -14.66184 -14.60966 -14.04584 -13.79980 -13.44152 -13.15490 -13.01090 -12.98978 -12.94438 -12.62308 -12.44139 -12.35003 -12.29445 -12.16326 -12.01506 -11.90531 -11.51453 -11.50505 -11.45650 -11.26792 -10.59275 -10.40726 -10.04862 -9.87129 -9.27175 -8.61822 -7.86694 -5.37544 0.16176 1.32107 1.47292 1.47531 1.52408 1.57094 2.04522 2.08727 2.50284 3.05116 3.29818 3.46762 3.49902 3.69458 3.77665 3.95834 4.06291 4.25123 4.26642 4.29602 4.30697 4.35669 4.44475 4.47826 4.53118 4.58022 4.59700 4.63439 4.71698 4.75750 4.85593 4.87245 4.90564 4.95001 5.05262 5.13250 5.19109 5.24538 5.25275 5.38440 5.39051 5.52645 5.61468 5.73124 5.74798 6.13669 6.22325 6.32950 6.40601 6.95944 7.06026 7.15391 7.83889 8.39379 9.19427 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.001841 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.894046 B =15202.910342 C =15684.920123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C 0.016 3.984 4 C -0.175 4.175 5 C -0.056 4.056 6 C 0.591 3.409 7 O -0.572 6.572 8 N -0.696 5.696 9 C 0.127 3.873 10 C 0.051 3.949 11 N -0.540 5.540 12 C 0.053 3.947 13 C 0.184 3.816 14 N -0.615 5.615 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.142 3.858 24 C 0.048 3.952 25 N -0.268 5.268 26 C 0.083 3.917 27 N -0.294 5.294 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.192 0.808 34 H 0.419 0.581 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.058 0.942 42 H -0.002 1.002 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.026 0.974 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.111 0.889 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 -16.202 -17.626 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.204 4.204 5 C -0.185 4.185 6 C 0.377 3.623 7 O -0.452 6.452 8 N -0.348 5.348 9 C 0.004 3.996 10 C -0.076 4.076 11 N -0.265 5.265 12 C -0.076 4.076 13 C 0.058 3.942 14 N -0.339 5.339 15 C -0.395 4.395 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.195 1.195 23 C 0.017 3.983 24 C -0.081 4.081 25 N -0.055 5.055 26 C -0.056 4.056 27 N -0.128 5.128 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.210 0.790 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.044 0.956 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.129 0.871 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.252 -14.854 -19.141 29.743 hybrid contribution 0.321 0.087 2.203 2.228 sum -16.931 -14.766 -16.938 28.135 Atomic orbital electron populations 1.21687 0.94617 1.02539 1.01357 1.20029 0.96124 0.86787 1.04558 1.22567 0.99859 0.97676 0.93866 1.22564 1.02906 0.91418 1.03480 1.21420 1.04377 0.97095 0.95585 1.17025 0.79199 0.86142 0.79904 1.90793 1.67946 1.21607 1.64816 1.45406 1.45030 1.12602 1.31797 1.21399 0.94435 0.90088 0.93724 1.22254 0.96409 0.94273 0.94704 1.61919 1.33762 1.07278 1.23561 1.22600 0.97553 0.98022 0.89439 1.20641 0.91026 0.84817 0.97702 1.44353 1.57437 1.24568 1.07532 1.19510 0.97922 1.27491 0.94578 0.91759 1.25934 0.94484 1.00908 1.03189 1.70139 1.01744 1.50257 1.36053 0.85213 0.76613 0.78261 0.79997 1.20962 1.22045 1.19497 1.21138 0.93628 0.94722 0.88856 1.22594 0.94081 0.91980 0.99466 1.45794 1.30350 1.09974 1.19416 1.22432 1.05465 0.80841 0.96861 1.73101 1.20287 0.93183 1.26270 0.90450 0.93399 0.93679 0.89806 0.87654 0.79050 0.74347 0.91506 0.91260 0.88430 0.93213 0.89443 0.95794 0.92340 0.98373 0.94013 0.92401 0.96718 0.95557 0.88849 0.89058 0.87094 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.87 71.98 0.71 -0.82 16 2 C -0.04 -0.37 6.51 29.85 0.19 -0.18 16 3 C 0.02 0.27 6.49 43.05 0.28 0.55 16 4 C -0.17 -2.64 10.42 22.66 0.24 -2.40 16 5 C -0.06 -1.13 6.96 40.79 0.28 -0.85 16 6 C 0.59 13.18 7.79 86.59 0.67 13.86 16 7 O -0.57 -16.43 14.80 -4.10 -0.06 -16.49 16 8 N -0.70 -12.12 5.54 -466.64 -2.58 -14.70 16 9 C 0.13 2.73 4.93 86.38 0.43 3.16 16 10 C 0.05 1.12 5.38 86.30 0.46 1.58 16 11 N -0.54 -17.18 4.78 -895.24 -4.28 -21.46 16 12 C 0.05 1.92 5.58 86.38 0.48 2.40 16 13 C 0.18 8.93 5.36 86.35 0.46 9.39 16 14 N -0.61 -31.46 3.03 -698.16 -2.11 -33.57 16 15 C -0.26 -14.71 9.62 84.03 0.81 -13.90 16 16 H 0.06 3.49 7.85 -2.91 -0.02 3.46 16 17 C -0.05 -2.79 5.08 84.86 0.43 -2.36 16 18 N -0.94 -55.43 11.03 21.65 0.24 -55.19 16 19 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.14 6.06 6.69 86.35 0.58 6.64 16 24 C 0.05 1.61 5.04 86.38 0.44 2.04 16 25 N -0.27 -5.58 3.75 -356.02 -1.33 -6.91 16 26 C 0.08 1.35 10.72 127.77 1.37 2.72 16 27 N -0.29 -6.14 11.87 -47.50 -0.56 -6.71 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.60 8.12 -2.39 -0.02 0.58 16 33 H 0.19 1.43 7.62 -2.91 -0.02 1.41 16 34 H 0.42 4.56 7.54 -92.71 -0.70 3.86 16 35 H 0.07 1.59 6.18 -2.39 -0.01 1.58 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.05 0.99 8.08 -2.38 -0.02 0.97 16 39 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 3.18 6.20 -2.39 -0.01 3.16 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.06 2.38 7.95 -2.39 -0.02 2.37 16 45 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.09 2.69 5.73 -2.38 -0.01 2.68 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.10 1.81 6.54 -2.39 -0.02 1.80 16 Total: -1.00 -73.07 398.07 -0.59 -73.67 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.24 Total: 12.62 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 7.84 Total: 21.85 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -10.63 Total: -138.54 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.06 Total: -16.49 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.07 -0.59 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713812352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.637 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds