Wall clock time and date at job start Tue Mar 31 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36592 * 126.57979 * 2 1 4 4 C 1.47523 * 125.77281 * 0.04889 * 3 2 1 5 5 O 1.21601 * 119.99842 * 359.70965 * 4 3 2 6 6 N 1.34778 * 120.00367 * 179.71127 * 4 3 2 7 7 C 1.46496 * 120.00031 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47055 * 35.00639 * 7 6 4 9 9 C 1.53006 * 109.47070 * 154.99902 * 7 6 4 10 10 N 1.46504 * 109.46883 * 305.00371 * 9 7 6 11 11 C 1.36936 * 119.99477 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00404 * 359.97438 * 11 10 9 13 13 C 1.38814 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00093 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47327 * 59.99747 * 15 13 11 17 17 H 1.48505 * 109.47059 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47290 * 299.99991 * 15 13 11 19 19 C 1.52999 * 109.47330 * 274.99914 * 7 6 4 20 20 C 1.53005 * 109.47007 * 180.02562 * 19 7 6 21 21 C 1.53002 * 109.46833 * 180.02562 * 20 19 7 22 22 C 1.52996 * 109.47413 * 59.99750 * 21 20 19 23 23 C 1.53000 * 109.47375 * 300.00307 * 22 21 20 24 24 C 1.52996 * 109.46846 * 60.00303 * 19 7 6 25 25 N 1.34400 * 108.45904 * 179.78300 * 3 2 1 26 26 N 1.28757 * 109.52231 * 0.22553 * 25 3 2 27 27 N 1.34810 * 126.58093 * 180.18170 * 2 1 3 28 28 C 1.46505 * 126.59408 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47513 * 89.99419 * 1 2 3 30 30 H 1.09001 * 109.47030 * 209.99773 * 1 2 3 31 31 H 1.08998 * 109.47070 * 329.99021 * 1 2 3 32 32 H 0.97002 * 119.99581 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.47002 * 64.99868 * 9 7 6 34 34 H 1.08993 * 109.46955 * 185.00306 * 9 7 6 35 35 H 0.96992 * 119.99966 * 359.97438 * 10 9 7 36 36 H 0.96993 * 120.00031 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.47070 * 300.00508 * 19 7 6 38 38 H 1.08998 * 109.46817 * 299.99930 * 20 19 7 39 39 H 1.08992 * 109.46983 * 60.00576 * 20 19 7 40 40 H 1.09008 * 109.46773 * 299.99866 * 21 20 19 41 41 H 1.08997 * 109.47219 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.47548 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47249 * 59.99777 * 22 21 20 44 44 H 1.09008 * 109.47015 * 300.00009 * 23 22 21 45 45 H 1.09002 * 109.47259 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.47165 * 299.99729 * 24 19 7 47 47 H 1.08998 * 109.47611 * 60.00231 * 24 19 7 48 48 H 1.09003 * 109.47247 * 270.24673 * 28 27 2 49 49 H 1.09005 * 109.47124 * 30.24794 * 28 27 2 50 50 H 1.08998 * 109.47353 * 150.24739 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0010 5 8 0.6859 2.7628 -0.0034 6 7 2.7817 3.4988 0.0068 7 6 2.3375 4.8947 0.0072 8 1 1.4226 4.9847 0.5929 9 6 3.4260 5.7761 0.6233 10 7 3.7672 5.2711 1.9555 11 6 4.7235 5.9046 2.7035 12 1 5.2265 6.7761 2.3112 13 6 5.0465 5.4265 3.9660 14 7 4.4333 4.3646 4.4444 15 14 6.3515 6.2901 4.9861 16 1 5.9396 7.6959 5.2294 17 1 6.5083 5.5887 6.2857 18 1 7.6436 6.2725 4.2545 19 6 2.0695 5.3452 -1.4302 20 6 1.6062 6.8034 -1.4297 21 6 1.3375 7.2536 -2.8671 22 6 0.2484 6.3726 -3.4824 23 6 0.7117 4.9144 -3.4828 24 6 0.9810 4.4639 -2.0461 25 7 3.5983 0.6789 0.0048 26 7 3.6299 -0.6083 0.0031 27 7 2.3104 -1.0825 -0.0034 28 6 1.8864 -2.4849 -0.0074 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 3.7292 3.2912 0.0106 33 1 4.3122 5.7557 -0.0110 34 1 3.0613 6.7999 0.7052 35 1 3.3153 4.4887 2.3080 36 1 4.6587 4.0308 5.3267 37 1 2.9844 5.2551 -2.0157 38 1 0.6913 6.8937 -0.8440 39 1 2.3819 7.4309 -0.9911 40 1 2.2522 7.1631 -3.4531 41 1 1.0079 8.2925 -2.8668 42 1 0.0567 6.6936 -4.5062 43 1 -0.6662 6.4630 -2.8964 44 1 1.6264 4.8239 -4.0688 45 1 -0.0644 4.2867 -3.9208 46 1 1.3115 3.4252 -2.0465 47 1 0.0660 4.5539 -1.4606 48 1 1.7773 -2.8344 1.0193 49 1 0.9312 -2.5742 -0.5250 50 1 2.6350 -3.0894 -0.5193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714959183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:12 Heat of formation + Delta-G solvation = 48.127986 kcal Electronic energy + Delta-G solvation = -30289.437953 eV Core-core repulsion = 26353.197051 eV Total energy + Delta-G solvation = -3936.240902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.17775 -39.80641 -37.93177 -35.65553 -34.94182 -33.49590 -32.30966 -31.52325 -30.56143 -30.40741 -28.25391 -27.52894 -26.78795 -24.03035 -23.21251 -22.49432 -21.64979 -21.23747 -20.37457 -19.92679 -19.55351 -17.85317 -17.00074 -16.43071 -15.92559 -15.74722 -15.59629 -14.57902 -14.25568 -14.25159 -14.11510 -13.98188 -13.91749 -13.62702 -13.37569 -13.36012 -13.14464 -13.09192 -12.91715 -12.67367 -12.27581 -11.95898 -11.88473 -11.82700 -11.63357 -11.19149 -11.06986 -10.92901 -10.80459 -10.77641 -10.57881 -10.37145 -10.20467 -10.14230 -9.99148 -9.74203 -9.64183 -9.60507 -9.05962 -8.82955 -8.45788 -6.87372 -5.69946 -2.99426 1.16103 1.91082 2.02307 3.47952 3.50807 3.52653 3.53823 3.62077 4.23794 4.26320 4.60354 4.62421 4.73166 4.79712 4.83709 4.91964 4.95434 4.99747 5.23556 5.27777 5.34262 5.42759 5.50929 5.59905 5.61666 5.63450 5.68084 5.71308 5.76187 5.79878 5.86663 5.97686 6.01316 6.08508 6.14171 6.22683 6.30213 6.37189 6.38720 6.39816 6.50376 6.55167 6.61171 6.72450 6.79646 7.04599 7.74446 7.86132 8.13905 8.47573 8.58432 9.59312 10.16161 10.51294 11.52295 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006721 B = 0.004898 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4165.229282 B = 5715.004741 C = 9305.047897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.118 3.882 3 C -0.098 4.098 4 C 0.607 3.393 5 O -0.542 6.542 6 N -0.693 5.693 7 C 0.144 3.856 8 H 0.089 0.911 9 C 0.144 3.856 10 N -0.730 5.730 11 C -0.241 4.241 12 H 0.070 0.930 13 C -0.011 4.011 14 N -0.930 5.930 15 Si 0.907 3.093 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.104 4.104 25 N -0.193 5.193 26 N -0.072 5.072 27 N -0.370 5.370 28 C 0.089 3.911 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.411 0.589 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 -9.118 -16.039 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.020 4.020 3 C -0.238 4.238 4 C 0.391 3.609 5 O -0.420 6.420 6 N -0.342 5.342 7 C 0.039 3.961 8 H 0.107 0.893 9 C 0.016 3.984 10 N -0.375 5.375 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.207 4.207 14 N -0.578 5.578 15 Si 0.738 3.262 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.112 4.112 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.141 4.141 25 N -0.067 5.067 26 N -0.051 5.051 27 N -0.156 5.156 28 C -0.052 4.052 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.247 0.753 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.472 -9.247 -15.961 21.211 hybrid contribution 0.211 -0.004 0.853 0.879 sum -10.261 -9.250 -15.108 20.472 Atomic orbital electron populations 1.20686 0.84796 1.05432 1.04274 1.21879 0.96127 0.86400 0.97600 1.21322 0.88897 0.95724 1.17843 1.16597 0.85697 0.82381 0.76219 1.90729 1.15864 1.83498 1.51919 1.45742 1.10400 1.05499 1.72526 1.21356 0.99446 0.79818 0.95474 0.89317 1.21016 0.93995 0.95324 0.88049 1.42338 1.46702 1.34984 1.13500 1.19155 1.12853 1.08444 0.96802 0.91231 1.24735 1.00160 0.98122 0.97726 1.69666 1.44815 1.24953 1.18407 0.86281 0.81638 0.78679 0.79644 1.21320 1.21784 1.21274 1.21522 0.98781 0.95094 0.95790 1.21602 1.01741 0.95508 0.96374 1.21511 0.98731 0.98643 0.96536 1.21526 0.98664 0.95377 0.99987 1.21559 1.00485 0.95906 0.97746 1.21602 0.99150 0.98709 0.94676 1.74651 1.19113 1.03876 1.09023 1.82001 0.95789 1.03677 1.23659 1.50263 1.06635 1.07578 1.51084 1.22104 1.02169 0.76398 1.04571 0.89345 0.90963 0.86753 0.75270 0.95873 0.94559 0.77983 0.93545 0.91269 0.91777 0.91164 0.92253 0.92320 0.92781 0.92126 0.92640 0.92695 0.92317 0.91100 0.89422 0.88754 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.38 36.01 0.34 -0.54 16 2 C 0.12 1.54 7.02 -81.88 -0.57 0.96 16 3 C -0.10 -1.62 6.99 -83.55 -0.58 -2.21 16 4 C 0.61 10.49 6.17 -12.47 -0.08 10.42 16 5 O -0.54 -9.49 11.84 5.28 0.06 -9.43 16 6 N -0.69 -12.18 4.40 -54.85 -0.24 -12.42 16 7 C 0.14 2.46 2.00 -67.93 -0.14 2.32 16 8 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 9 C 0.14 2.87 5.31 -4.04 -0.02 2.85 16 10 N -0.73 -18.63 5.43 -59.90 -0.33 -18.96 16 11 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 12 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 13 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 15 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 C -0.09 -1.29 1.96 -90.62 -0.18 -1.47 16 20 C -0.11 -1.46 4.85 -26.73 -0.13 -1.59 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 23 C -0.12 -1.36 5.92 -26.75 -0.16 -1.52 16 24 C -0.10 -1.41 3.72 -26.76 -0.10 -1.51 16 25 N -0.19 -3.45 12.04 32.85 0.40 -3.05 16 26 N -0.07 -1.15 13.78 60.35 0.83 -0.32 16 27 N -0.37 -4.45 4.03 -63.59 -0.26 -4.71 16 28 C 0.09 0.54 11.18 59.85 0.67 1.21 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 31 H 0.11 1.32 6.43 -51.93 -0.33 0.98 16 32 H 0.41 7.61 8.29 -40.82 -0.34 7.27 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.72 6.71 -51.93 -0.35 0.37 16 35 H 0.39 10.61 7.33 -40.82 -0.30 10.31 16 36 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.88 5.78 -51.93 -0.30 0.58 16 47 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 48 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 0.31 7.78 -51.93 -0.40 -0.09 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -34.09 392.95 -7.60 -41.69 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.17 Total: 12.84 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.51 Total: -1.29 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: 1.13 Total: -67.53 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.06 Total: -9.43 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.09 -7.60 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714959183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.817 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds