Wall clock time and date at job start Tue Mar 31 2020 18:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.96351 * 2 1 4 4 C 1.33232 * 109.83026 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52853 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47649 * 89.99638 * 5 4 3 7 7 O 1.21288 * 119.99534 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00698 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00160 * 182.46792 * 8 6 5 10 10 C 1.52991 * 109.47100 * 48.13671 * 9 8 6 11 11 N 1.46503 * 109.47526 * 54.21589 * 10 9 8 12 12 C 1.36940 * 120.00266 * 174.98319 * 11 10 9 13 13 H 1.07996 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99838 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00015 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46905 * 90.00198 * 16 14 12 18 18 H 1.48498 * 109.47346 * 210.00292 * 16 14 12 19 19 H 1.48507 * 109.46941 * 330.00408 * 16 14 12 20 20 C 1.52996 * 109.46694 * 168.13579 * 9 8 6 21 21 C 1.53006 * 109.47516 * 59.99979 * 20 9 8 22 22 C 1.53003 * 109.46637 * 59.99722 * 21 20 9 23 23 C 1.52993 * 109.47234 * 299.99829 * 22 21 20 24 24 C 1.52998 * 109.46931 * 288.13476 * 9 8 6 25 25 H 1.09009 * 109.46755 * 180.02562 * 24 9 8 26 26 C 1.52996 * 109.47347 * 60.00503 * 24 9 8 27 27 N 1.30718 * 108.94856 * 0.25995 * 4 3 2 28 28 N 1.34424 * 125.96041 * 179.97438 * 2 1 3 29 29 H 0.97001 * 126.82504 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.46834 * 90.02517 * 1 2 3 31 31 H 1.09000 * 109.46954 * 210.02485 * 1 2 3 32 32 H 1.08995 * 109.47128 * 330.03198 * 1 2 3 33 33 H 1.09007 * 109.46949 * 329.99904 * 5 4 3 34 34 H 1.09000 * 109.47181 * 210.00272 * 5 4 3 35 35 H 0.96999 * 119.99345 * 2.47052 * 8 6 5 36 36 H 1.09005 * 109.47159 * 174.21650 * 10 9 8 37 37 H 1.08999 * 109.47256 * 294.21411 * 10 9 8 38 38 H 0.97004 * 119.99738 * 354.97862 * 11 10 9 39 39 H 0.96995 * 120.00007 * 179.97438 * 15 14 12 40 40 H 1.09009 * 109.47146 * 179.97438 * 20 9 8 41 41 H 1.09003 * 109.47613 * 299.99652 * 20 9 8 42 42 H 1.08997 * 109.46943 * 299.99715 * 21 20 9 43 43 H 1.08997 * 109.47207 * 179.97438 * 21 20 9 44 44 H 1.09001 * 109.46507 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47460 * 60.00310 * 22 21 20 46 46 H 1.08992 * 109.47669 * 300.00328 * 23 22 21 47 47 H 1.08999 * 109.47400 * 180.02562 * 23 22 21 48 48 H 1.08992 * 109.47158 * 53.22579 * 26 24 9 49 49 H 1.08998 * 109.47421 * 173.23241 * 26 24 9 50 50 H 1.09002 * 109.46600 * 293.22950 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7373 1.6235 0.0013 6 6 5.1306 1.9350 1.4222 7 8 4.5122 1.4457 2.3438 8 7 6.1695 2.7574 1.6692 9 6 6.5859 3.0174 3.0495 10 6 6.7047 1.6921 3.8046 11 7 7.5954 0.7899 3.0705 12 6 7.9363 -0.4227 3.6078 13 1 7.5488 -0.7137 4.5730 14 6 8.7798 -1.2777 2.9120 15 7 9.2517 -0.9232 1.7355 16 14 9.2454 -2.9315 3.6453 17 1 8.2603 -3.9573 3.2179 18 1 10.5993 -3.3186 3.1738 19 1 9.2465 -2.8333 5.1271 20 6 7.9414 3.7269 3.0481 21 6 7.8226 5.0523 2.2929 22 6 6.7831 5.9397 2.9807 23 6 5.4276 5.2302 2.9819 24 6 5.5464 3.9048 3.7371 25 1 5.8564 4.0986 4.7640 26 6 4.1909 3.1953 3.7385 27 7 3.6194 -0.6169 -0.0047 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 4.4704 2.5471 -0.5126 34 1 5.5745 1.1510 -0.5123 35 1 6.6414 3.1770 0.9330 36 1 7.1124 1.8757 4.7987 37 1 5.7190 1.2356 3.8947 38 1 7.9437 1.0515 2.2038 39 1 9.8414 -1.5205 1.2495 40 1 8.2510 3.9209 4.0751 41 1 8.6820 3.0948 2.5582 42 1 7.5128 4.8588 1.2660 43 1 8.7882 5.5580 2.2923 44 1 6.6981 6.8837 2.4424 45 1 7.0928 6.1332 4.0076 46 1 5.1177 5.0367 1.9551 47 1 4.6869 5.8625 3.4715 48 1 4.3020 2.2004 4.1695 49 1 3.4801 3.7708 4.3315 50 1 3.8249 3.1092 2.7154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715130721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:42 Heat of formation + Delta-G solvation = 68.032645 kcal Electronic energy + Delta-G solvation = -31294.430465 eV Core-core repulsion = 27359.052693 eV Total energy + Delta-G solvation = -3935.377772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00050 -40.59020 -37.64674 -34.54112 -33.56518 -33.06982 -32.33367 -32.23200 -31.24573 -29.79535 -28.96064 -27.53629 -26.21177 -24.88961 -22.87522 -22.07369 -21.08741 -21.02456 -20.37235 -19.82429 -18.62583 -17.77141 -17.06200 -16.92434 -15.77657 -15.43862 -15.18926 -14.70733 -14.30116 -14.23399 -13.91446 -13.76170 -13.56540 -13.54459 -13.21735 -12.96432 -12.90378 -12.73273 -12.58189 -12.31600 -11.93156 -11.69527 -11.66359 -11.51324 -11.35981 -11.17878 -10.96786 -10.76150 -10.68076 -10.65280 -10.25626 -10.02588 -9.96201 -9.87182 -9.84350 -9.53784 -9.50551 -9.37126 -8.98287 -8.55191 -8.16938 -6.67467 -5.62558 -2.86709 1.74637 2.74531 2.92812 3.26988 3.51880 3.56941 3.57965 3.75127 4.07370 4.66171 4.71752 4.79531 4.94025 4.97197 4.98756 5.18723 5.21157 5.29207 5.36641 5.40047 5.55209 5.61215 5.68097 5.71765 5.73658 5.74454 5.79656 5.83456 5.90188 6.12037 6.17884 6.24325 6.32829 6.36622 6.39946 6.41909 6.48712 6.52700 6.56773 6.65765 6.74987 6.80604 6.96573 7.15249 7.21982 7.36933 7.84473 8.09537 8.24944 8.57699 8.86897 9.69005 10.29166 10.64940 11.61002 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007300 B = 0.005673 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3834.895480 B = 4934.881860 C = 7866.921608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.274 3.726 3 N -0.532 5.532 4 C 0.255 3.745 5 C -0.051 4.051 6 C 0.524 3.476 7 O -0.503 6.503 8 N -0.711 5.711 9 C 0.184 3.816 10 C 0.133 3.867 11 N -0.722 5.722 12 C -0.223 4.223 13 H 0.065 0.935 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.902 3.098 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.284 1.284 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.092 4.092 25 H 0.069 0.931 26 C -0.139 4.139 27 N -0.288 5.288 28 N -0.483 5.483 29 H 0.438 0.562 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.393 0.607 36 H 0.017 0.983 37 H 0.059 0.941 38 H 0.381 0.619 39 H 0.251 0.749 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.022 0.978 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 11.304 -4.980 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 N -0.262 5.262 4 C -0.029 4.029 5 C -0.094 4.094 6 C 0.308 3.692 7 O -0.378 6.378 8 N -0.363 5.363 9 C 0.098 3.902 10 C 0.006 3.994 11 N -0.367 5.367 12 C -0.354 4.354 13 H 0.083 0.917 14 C -0.211 4.211 15 N -0.586 5.586 16 Si 0.734 3.266 17 H -0.221 1.221 18 H -0.220 1.220 19 H -0.210 1.210 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.147 4.147 24 C -0.112 4.112 25 H 0.088 0.912 26 C -0.195 4.195 27 N -0.116 5.116 28 N -0.202 5.202 29 H 0.283 0.717 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.228 0.772 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.215 0.785 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.041 0.959 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.064 10.781 -4.183 18.207 hybrid contribution 0.423 -1.442 -0.232 1.520 sum -13.641 9.339 -4.414 17.111 Atomic orbital electron populations 1.20332 0.84031 1.04844 1.04112 1.24273 0.96406 0.83069 0.96746 1.70247 1.01347 1.29491 1.25112 1.23243 0.92320 0.89786 0.97524 1.19915 0.93871 0.98152 0.97450 1.19673 0.80274 0.79432 0.89789 1.90738 1.52775 1.49692 1.44602 1.45755 1.33514 1.48728 1.08335 1.20557 0.92693 0.95557 0.81434 1.21285 0.96195 0.88651 0.93293 1.42179 1.55622 1.16906 1.21944 1.19194 1.21717 0.93355 1.01167 0.91670 1.24621 1.01005 0.98507 0.97011 1.69638 1.38129 1.36960 1.13890 0.86249 0.77355 0.84853 0.78144 1.22058 1.21976 1.20992 1.21781 0.96655 0.95552 1.01705 1.21562 0.98742 0.96114 0.99265 1.21548 0.95522 0.97909 1.00619 1.21543 0.96463 0.95924 1.00756 1.21486 0.96384 0.94487 0.98837 0.91244 1.22372 0.94414 1.00218 1.02515 1.78203 0.95878 1.12343 1.25172 1.47982 1.04502 1.09867 1.57839 0.71749 0.89326 0.90090 0.88545 0.87034 0.86473 0.77221 0.96481 0.92307 0.78463 0.93885 0.90889 0.90063 0.92248 0.92082 0.92587 0.92237 0.92007 0.92659 0.90416 0.95914 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.51 36.01 0.38 -0.15 16 2 C 0.27 3.52 8.24 -155.70 -1.28 2.23 16 3 N -0.53 -8.50 11.19 -8.16 -0.09 -8.59 16 4 C 0.25 4.44 6.63 -156.86 -1.04 3.40 16 5 C -0.05 -0.78 6.33 -29.04 -0.18 -0.97 16 6 C 0.52 9.21 6.04 -10.99 -0.07 9.14 16 7 O -0.50 -10.50 9.25 5.55 0.05 -10.45 16 8 N -0.71 -11.01 3.49 -47.62 -0.17 -11.17 16 9 C 0.18 3.01 0.32 -131.83 -0.04 2.97 16 10 C 0.13 2.90 4.43 -4.04 -0.02 2.88 16 11 N -0.72 -18.67 5.05 -59.91 -0.30 -18.98 16 12 C -0.22 -6.53 9.99 -15.06 -0.15 -6.68 16 13 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 14 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -28.79 13.06 55.49 0.72 -28.06 16 16 Si 0.90 23.57 29.55 -169.99 -5.02 18.54 16 17 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 18 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 19 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 20 C -0.12 -1.78 4.71 -26.73 -0.13 -1.91 16 21 C -0.12 -1.38 5.75 -26.73 -0.15 -1.53 16 22 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 23 C -0.11 -1.32 5.04 -26.73 -0.13 -1.45 16 24 C -0.09 -1.35 2.07 -90.62 -0.19 -1.54 16 25 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 26 C -0.14 -2.29 7.27 37.16 0.27 -2.02 16 27 N -0.29 -5.33 12.80 32.42 0.41 -4.91 16 28 N -0.48 -6.64 7.45 32.62 0.24 -6.39 16 29 H 0.44 4.32 8.96 -182.33 -1.63 2.69 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 35 H 0.39 5.11 7.00 -40.82 -0.29 4.83 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.42 4.29 -51.93 -0.22 1.20 16 38 H 0.38 10.10 6.63 -40.82 -0.27 9.83 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.20 16 40 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 41 H 0.08 1.42 7.35 -51.93 -0.38 1.04 16 42 H 0.06 0.64 6.65 -51.93 -0.35 0.29 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 1.51 5.14 -51.93 -0.27 1.24 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 1.17 5.29 -51.93 -0.27 0.89 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -37.32 382.83 -10.49 -47.81 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -9.12 Total: 14.08 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.99 Total: 2.35 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: 0.82 Total: -78.11 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.32 -10.49 -47.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715130721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.847 kcal (2) G-P(sol) polarization free energy of solvation -37.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds