Wall clock time and date at job start Tue Mar 31 2020 18:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.96351 * 2 1 4 4 C 1.33232 * 109.83026 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52853 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47649 * 89.99638 * 5 4 3 7 7 O 1.21288 * 119.99534 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00698 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00160 * 182.46792 * 8 6 5 10 10 C 1.52991 * 109.47100 * 48.13671 * 9 8 6 11 11 N 1.46503 * 109.47526 * 54.21589 * 10 9 8 12 12 C 1.36940 * 120.00266 * 174.98319 * 11 10 9 13 13 H 1.07996 * 119.99841 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99838 * 179.97438 * 12 11 10 15 15 N 1.31623 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00015 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46905 * 90.00198 * 16 14 12 18 18 H 1.48498 * 109.47346 * 210.00292 * 16 14 12 19 19 H 1.48507 * 109.46941 * 330.00408 * 16 14 12 20 20 C 1.52996 * 109.46694 * 168.13579 * 9 8 6 21 21 C 1.53006 * 109.47516 * 59.99979 * 20 9 8 22 22 C 1.53003 * 109.46637 * 59.99722 * 21 20 9 23 23 C 1.52993 * 109.47234 * 299.99829 * 22 21 20 24 24 C 1.52998 * 109.46931 * 288.13476 * 9 8 6 25 25 H 1.09009 * 109.46755 * 180.02562 * 24 9 8 26 26 C 1.52996 * 109.47347 * 60.00503 * 24 9 8 27 27 N 1.30718 * 108.94856 * 0.25995 * 4 3 2 28 28 N 1.34424 * 125.96041 * 179.97438 * 2 1 3 29 29 H 0.97001 * 126.82504 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.46834 * 90.02517 * 1 2 3 31 31 H 1.09000 * 109.46954 * 210.02485 * 1 2 3 32 32 H 1.08995 * 109.47128 * 330.03198 * 1 2 3 33 33 H 1.09007 * 109.46949 * 329.99904 * 5 4 3 34 34 H 1.09000 * 109.47181 * 210.00272 * 5 4 3 35 35 H 0.96999 * 119.99345 * 2.47052 * 8 6 5 36 36 H 1.09005 * 109.47159 * 174.21650 * 10 9 8 37 37 H 1.08999 * 109.47256 * 294.21411 * 10 9 8 38 38 H 0.97004 * 119.99738 * 354.97862 * 11 10 9 39 39 H 0.96995 * 120.00007 * 179.97438 * 15 14 12 40 40 H 1.09009 * 109.47146 * 179.97438 * 20 9 8 41 41 H 1.09003 * 109.47613 * 299.99652 * 20 9 8 42 42 H 1.08997 * 109.46943 * 299.99715 * 21 20 9 43 43 H 1.08997 * 109.47207 * 179.97438 * 21 20 9 44 44 H 1.09001 * 109.46507 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47460 * 60.00310 * 22 21 20 46 46 H 1.08992 * 109.47669 * 300.00328 * 23 22 21 47 47 H 1.08999 * 109.47400 * 180.02562 * 23 22 21 48 48 H 1.08992 * 109.47158 * 53.22579 * 26 24 9 49 49 H 1.08998 * 109.47421 * 173.23241 * 26 24 9 50 50 H 1.09002 * 109.46600 * 293.22950 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7373 1.6235 0.0013 6 6 5.1306 1.9350 1.4222 7 8 4.5122 1.4457 2.3438 8 7 6.1695 2.7574 1.6692 9 6 6.5859 3.0174 3.0495 10 6 6.7047 1.6921 3.8046 11 7 7.5954 0.7899 3.0705 12 6 7.9363 -0.4227 3.6078 13 1 7.5488 -0.7137 4.5730 14 6 8.7798 -1.2777 2.9120 15 7 9.2517 -0.9232 1.7355 16 14 9.2454 -2.9315 3.6453 17 1 8.2603 -3.9573 3.2179 18 1 10.5993 -3.3186 3.1738 19 1 9.2465 -2.8333 5.1271 20 6 7.9414 3.7269 3.0481 21 6 7.8226 5.0523 2.2929 22 6 6.7831 5.9397 2.9807 23 6 5.4276 5.2302 2.9819 24 6 5.5464 3.9048 3.7371 25 1 5.8564 4.0986 4.7640 26 6 4.1909 3.1953 3.7385 27 7 3.6194 -0.6169 -0.0047 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0146 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 4.4704 2.5471 -0.5126 34 1 5.5745 1.1510 -0.5123 35 1 6.6414 3.1770 0.9330 36 1 7.1124 1.8757 4.7987 37 1 5.7190 1.2356 3.8947 38 1 7.9437 1.0515 2.2038 39 1 9.8414 -1.5205 1.2495 40 1 8.2510 3.9209 4.0751 41 1 8.6820 3.0948 2.5582 42 1 7.5128 4.8588 1.2660 43 1 8.7882 5.5580 2.2923 44 1 6.6981 6.8837 2.4424 45 1 7.0928 6.1332 4.0076 46 1 5.1177 5.0367 1.9551 47 1 4.6869 5.8625 3.4715 48 1 4.3020 2.2004 4.1695 49 1 3.4801 3.7708 4.3315 50 1 3.8249 3.1092 2.7154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715130721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:41 Heat of formation + Delta-G solvation = 41.698789 kcal Electronic energy + Delta-G solvation = -31295.572386 eV Core-core repulsion = 27359.052693 eV Total energy + Delta-G solvation = -3936.519693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.13582 -41.92595 -38.93387 -36.36798 -34.73614 -34.55663 -33.53114 -33.31682 -33.00828 -31.28016 -30.14704 -28.55466 -27.69898 -26.47543 -24.70023 -23.34478 -22.37554 -22.12407 -21.55341 -21.04209 -19.99010 -19.14298 -18.87117 -18.24606 -17.15550 -16.79041 -16.53340 -16.25278 -15.82375 -15.35987 -15.25883 -15.02406 -14.84970 -14.82051 -14.75820 -14.37794 -13.92180 -13.72495 -13.63465 -13.57587 -13.42443 -13.05987 -12.93373 -12.78553 -12.71547 -12.64809 -12.62444 -12.45481 -12.18414 -12.06133 -11.82895 -11.75581 -11.30200 -11.12895 -11.06527 -11.02937 -10.93298 -10.69640 -10.54418 -10.20735 -9.56367 -8.83991 -7.92787 -5.16450 0.63761 1.40598 1.43152 1.50767 1.70179 1.78693 1.91777 2.49301 2.56659 3.05819 3.40156 3.61198 3.74272 3.81991 3.86569 3.90870 4.09583 4.17045 4.24499 4.41126 4.42755 4.46462 4.56210 4.60785 4.65717 4.71458 4.75791 4.77553 4.82279 4.93004 4.97982 5.04771 5.06770 5.19437 5.25874 5.29303 5.30594 5.31788 5.39235 5.41880 5.44933 5.47426 5.53998 5.61368 5.79064 5.85825 6.23961 6.30539 6.80533 7.10742 7.37510 7.54045 8.15413 8.43373 9.30355 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007300 B = 0.005673 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3834.895480 B = 4934.881860 C = 7866.921608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.282 3.718 3 N -0.559 5.559 4 C 0.244 3.756 5 C -0.049 4.049 6 C 0.518 3.482 7 O -0.540 6.540 8 N -0.700 5.700 9 C 0.192 3.808 10 C 0.134 3.866 11 N -0.725 5.725 12 C -0.236 4.236 13 H 0.057 0.943 14 C -0.069 4.069 15 N -0.961 5.961 16 Si 0.963 3.037 17 H -0.296 1.296 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.102 4.102 24 C -0.087 4.087 25 H 0.071 0.929 26 C -0.126 4.126 27 N -0.347 5.347 28 N -0.480 5.480 29 H 0.451 0.549 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.408 0.592 36 H 0.008 0.992 37 H 0.036 0.964 38 H 0.377 0.623 39 H 0.249 0.751 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.040 0.960 49 H 0.036 0.964 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 13.092 -5.515 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.005 3.995 3 N -0.289 5.289 4 C -0.040 4.040 5 C -0.091 4.091 6 C 0.303 3.697 7 O -0.418 6.418 8 N -0.353 5.353 9 C 0.105 3.895 10 C 0.007 3.993 11 N -0.368 5.368 12 C -0.369 4.369 13 H 0.075 0.925 14 C -0.261 4.261 15 N -0.612 5.612 16 Si 0.793 3.207 17 H -0.223 1.223 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.151 4.151 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.107 4.107 25 H 0.089 0.911 26 C -0.183 4.183 27 N -0.177 5.177 28 N -0.199 5.199 29 H 0.299 0.701 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.244 0.756 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.210 0.790 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.161 12.583 -4.717 20.260 hybrid contribution 0.648 -2.054 -0.018 2.154 sum -14.514 10.529 -4.736 18.545 Atomic orbital electron populations 1.20630 0.79771 1.06302 1.06233 1.25346 0.98379 0.81988 0.93832 1.70260 1.01039 1.30903 1.26705 1.23565 0.93432 0.89775 0.97203 1.19986 0.93503 0.99529 0.96096 1.20118 0.80142 0.78995 0.90414 1.90741 1.54084 1.51096 1.45864 1.45660 1.32905 1.48289 1.08470 1.20402 0.94528 0.93073 0.81464 1.21323 0.93816 0.90734 0.93410 1.42222 1.55997 1.16625 1.21912 1.19466 1.21574 0.94817 1.01018 0.92478 1.25338 1.01408 1.01769 0.97627 1.69769 1.38676 1.37933 1.14858 0.85288 0.76843 0.80631 0.77915 1.22340 1.21455 1.19934 1.21701 0.94506 0.96994 1.01931 1.21541 1.00118 0.94045 0.99291 1.21523 0.93943 0.98386 1.01134 1.21494 0.97913 0.94175 1.00386 1.21442 0.94447 0.95508 0.99258 0.91109 1.22167 0.95860 0.98599 1.01703 1.78064 0.98828 1.13358 1.27402 1.47889 1.03306 1.11000 1.57751 0.70094 0.86660 0.87463 0.88166 0.83430 0.86691 0.75554 0.97420 0.94615 0.78999 0.94173 0.91137 0.92971 0.91122 0.90611 0.90053 0.91933 0.91799 0.91285 0.94090 0.94529 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.51 71.24 0.75 -0.07 16 2 C 0.28 7.01 8.24 138.23 1.14 8.15 16 3 N -0.56 -17.72 11.19 -179.73 -2.01 -19.73 16 4 C 0.24 8.66 6.63 138.63 0.92 9.57 16 5 C -0.05 -1.51 6.33 29.10 0.18 -1.33 16 6 C 0.52 18.59 6.04 87.66 0.53 19.12 16 7 O -0.54 -23.53 9.25 -3.05 -0.03 -23.55 16 8 N -0.70 -21.68 3.49 -422.95 -1.48 -23.16 16 9 C 0.19 6.33 0.32 3.60 0.00 6.34 16 10 C 0.13 6.08 4.43 86.38 0.38 6.47 16 11 N -0.72 -38.90 5.05 -343.46 -1.74 -40.64 16 12 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 13 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 14 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 15 N -0.96 -60.20 13.06 21.65 0.28 -59.92 16 16 Si 0.96 49.26 29.55 68.60 2.03 51.29 16 17 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 18 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 19 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 20 C -0.11 -3.33 4.71 30.60 0.14 -3.19 16 21 C -0.11 -2.30 5.75 30.60 0.18 -2.12 16 22 C -0.11 -2.02 5.92 30.59 0.18 -1.83 16 23 C -0.10 -2.18 5.04 30.59 0.15 -2.02 16 24 C -0.09 -2.48 2.07 -10.79 -0.02 -2.50 16 25 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 26 C -0.13 -4.21 7.27 71.98 0.52 -3.69 16 27 N -0.35 -13.27 12.80 -51.34 -0.66 -13.93 16 28 N -0.48 -13.20 7.45 -50.71 -0.38 -13.57 16 29 H 0.45 8.84 8.96 -213.10 -1.91 6.93 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.15 3.31 8.14 -2.38 -0.02 3.29 16 34 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.41 10.22 7.00 -92.71 -0.65 9.57 16 36 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.04 1.84 4.29 -2.39 -0.01 1.83 16 38 H 0.38 20.67 6.63 -92.71 -0.61 20.05 16 39 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.05 1.84 7.35 -2.39 -0.02 1.83 16 42 H 0.07 1.30 6.65 -2.39 -0.02 1.29 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.06 1.36 7.60 -2.39 -0.02 1.34 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 48 H 0.04 1.67 5.14 -2.39 -0.01 1.65 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.06 2.00 5.29 -2.39 -0.01 1.98 16 Total: -1.00 -84.49 382.83 0.21 -84.28 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -2.19 Total: 43.20 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 6.37 Total: 15.73 kcal Atomic # 7 Polarization: -164.98 SS G_CDS: -5.97 Total: -170.95 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.03 Total: -23.55 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Total: -84.49 0.21 -84.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715130721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.982 kcal (2) G-P(sol) polarization free energy of solvation -84.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds