Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.96167 * 2 1 4 4 C 1.33240 * 109.83032 * 180.12269 * 3 2 1 5 5 C 1.50698 * 125.52921 * 179.85786 * 4 3 2 6 6 C 1.50706 * 109.47043 * 269.71969 * 5 4 3 7 7 O 1.21288 * 119.99787 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00138 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99993 * 174.56311 * 8 6 5 10 10 C 1.53003 * 109.47083 * 64.18709 * 9 8 6 11 11 N 1.46503 * 109.46846 * 174.97187 * 10 9 8 12 12 C 1.36936 * 120.00043 * 185.06544 * 11 10 9 13 13 H 1.08000 * 119.99590 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.00049 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00193 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99953 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47129 * 89.99913 * 16 14 12 18 18 H 1.48495 * 109.47145 * 209.99886 * 16 14 12 19 19 H 1.48497 * 109.46839 * 329.99762 * 16 14 12 20 20 C 1.53002 * 109.46818 * 304.18935 * 9 8 6 21 21 C 1.52998 * 109.47358 * 299.99983 * 20 9 8 22 22 C 1.53007 * 109.46995 * 300.00465 * 21 20 9 23 23 C 1.53001 * 109.46956 * 59.99791 * 22 21 20 24 24 C 1.52993 * 109.47046 * 299.99615 * 23 22 21 25 25 H 1.08998 * 109.47429 * 300.00278 * 24 23 22 26 26 C 1.53006 * 109.46792 * 180.02562 * 24 23 22 27 27 N 1.30716 * 108.94743 * 359.59073 * 4 3 2 28 28 N 1.34431 * 125.96264 * 179.66941 * 2 1 3 29 29 H 0.97003 * 126.82172 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.46843 * 270.33014 * 1 2 3 31 31 H 1.09002 * 109.46954 * 30.32952 * 1 2 3 32 32 H 1.09001 * 109.47020 * 150.32850 * 1 2 3 33 33 H 1.08997 * 109.47495 * 149.71595 * 5 4 3 34 34 H 1.08998 * 109.47332 * 29.71571 * 5 4 3 35 35 H 0.97002 * 119.99786 * 354.55739 * 8 6 5 36 36 H 1.09001 * 109.47230 * 294.96845 * 10 9 8 37 37 H 1.08997 * 109.46749 * 54.97365 * 10 9 8 38 38 H 0.97001 * 119.99808 * 5.06049 * 11 10 9 39 39 H 0.96993 * 120.00117 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.46823 * 180.02562 * 20 9 8 41 41 H 1.09001 * 109.47428 * 60.00028 * 20 9 8 42 42 H 1.08994 * 109.47378 * 180.02562 * 21 20 9 43 43 H 1.08998 * 109.47237 * 59.99835 * 21 20 9 44 44 H 1.08998 * 109.46614 * 299.99752 * 22 21 20 45 45 H 1.09004 * 109.46945 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.47491 * 60.00498 * 23 22 21 47 47 H 1.09001 * 109.46481 * 179.97438 * 23 22 21 48 48 H 1.09001 * 109.47248 * 60.00493 * 26 24 23 49 49 H 1.09004 * 109.47035 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47176 * 300.00207 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0066 6 6 5.1321 1.9282 -1.4288 7 8 4.5147 1.4343 -2.3485 8 7 6.1719 2.7485 -1.6785 9 6 6.6311 2.9509 -3.0549 10 6 5.5259 3.6297 -3.8666 11 7 6.0262 3.9407 -5.2080 12 6 5.2450 4.6468 -6.0834 13 1 4.2600 4.9742 -5.7851 14 6 5.7192 4.9418 -7.3542 15 7 6.9198 4.5433 -7.7177 16 14 4.6539 5.9058 -8.5482 17 1 4.9156 7.3582 -8.3836 18 1 4.9770 5.4991 -9.9393 19 1 3.2221 5.6262 -8.2706 20 6 6.9681 1.5976 -3.6842 21 6 8.0731 0.9187 -2.8726 22 6 9.3208 1.8045 -2.8689 23 6 8.9836 3.1577 -2.2396 24 6 7.8787 3.8365 -3.0513 25 1 8.2203 3.9871 -4.0753 26 6 7.5420 5.1900 -2.4222 27 7 3.6195 -0.6168 0.0044 28 7 2.2964 -1.0881 0.0063 29 1 2.0093 -2.0146 0.0113 30 1 -0.3633 0.0059 1.0277 31 1 -0.3633 0.8870 -0.5190 32 1 -0.3633 -0.8929 -0.5087 33 1 5.5740 1.1536 0.5101 34 1 4.4698 2.5496 0.5024 35 1 6.6161 3.2049 -0.9469 36 1 4.6690 2.9606 -3.9445 37 1 5.2235 4.5511 -3.3690 38 1 6.9107 3.6463 -5.4761 39 1 7.2510 4.7492 -8.6058 40 1 7.3102 1.7482 -4.7081 41 1 6.0793 0.9666 -3.6868 42 1 8.3136 -0.0451 -3.3212 43 1 7.7316 0.7682 -1.8485 44 1 9.6623 1.9550 -3.8930 45 1 10.1079 1.3210 -2.2903 46 1 8.6420 3.0071 -1.2155 47 1 9.8726 3.7884 -2.2366 48 1 8.4309 5.8208 -2.4200 49 1 6.7544 5.6735 -3.0003 50 1 7.2005 5.0398 -1.3981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715130726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = 47.285184 kcal Electronic energy + Delta-G solvation = -30593.836161 eV Core-core repulsion = 26657.558712 eV Total energy + Delta-G solvation = -3936.277449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -42.25355 -40.49790 -37.96495 -34.47545 -33.75569 -33.46090 -32.48546 -32.18452 -31.40337 -30.06259 -28.81075 -27.75691 -26.27894 -24.85264 -23.01311 -22.08699 -21.57525 -21.05883 -20.48898 -19.98883 -18.47392 -18.00750 -17.24111 -17.07973 -15.69066 -15.53385 -15.04239 -14.79995 -14.44509 -14.26556 -14.03419 -13.89598 -13.79237 -13.56500 -13.46138 -13.10273 -12.97963 -12.88585 -12.56610 -12.52696 -12.14569 -11.93030 -11.66702 -11.58459 -11.38802 -11.26193 -11.02852 -10.82018 -10.72584 -10.49762 -10.30475 -10.25565 -10.12028 -10.01605 -9.91219 -9.77785 -9.59819 -9.56924 -9.10204 -8.70430 -8.53528 -6.76690 -5.66445 -2.92749 1.46570 2.47645 2.67969 2.91091 3.48543 3.50443 3.55884 3.58145 3.85323 4.38122 4.59069 4.69447 4.89048 5.00493 5.02332 5.05215 5.07899 5.11750 5.22862 5.40826 5.46557 5.49541 5.51963 5.67874 5.72808 5.75455 5.84527 5.88224 5.91616 6.09011 6.11528 6.16017 6.20016 6.26982 6.29485 6.41033 6.43771 6.54706 6.57275 6.66206 6.69657 6.86980 6.89972 6.95973 7.04478 7.22489 7.81676 7.84403 7.99120 8.51531 8.56071 9.64286 10.22793 10.58046 11.56839 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003685 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.216041 B = 7597.206604 C = 9425.020120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.529 5.529 4 C 0.255 3.745 5 C -0.051 4.051 6 C 0.519 3.481 7 O -0.515 6.515 8 N -0.715 5.715 9 C 0.184 3.816 10 C 0.146 3.854 11 N -0.726 5.726 12 C -0.229 4.229 13 H 0.068 0.932 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.904 3.096 17 H -0.291 1.291 18 H -0.293 1.293 19 H -0.283 1.283 20 C -0.128 4.128 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.090 4.090 25 H 0.097 0.903 26 C -0.145 4.145 27 N -0.306 5.306 28 N -0.483 5.483 29 H 0.438 0.562 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.395 0.605 36 H 0.038 0.962 37 H 0.022 0.978 38 H 0.383 0.617 39 H 0.253 0.747 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -9.239 21.458 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.258 5.258 4 C -0.028 4.028 5 C -0.094 4.094 6 C 0.302 3.698 7 O -0.390 6.390 8 N -0.368 5.368 9 C 0.099 3.901 10 C 0.018 3.982 11 N -0.371 5.371 12 C -0.360 4.360 13 H 0.086 0.914 14 C -0.211 4.211 15 N -0.585 5.585 16 Si 0.736 3.264 17 H -0.219 1.219 18 H -0.219 1.219 19 H -0.209 1.209 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.109 4.109 25 H 0.116 0.884 26 C -0.202 4.202 27 N -0.134 5.134 28 N -0.202 5.202 29 H 0.284 0.716 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.230 0.770 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.218 0.782 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.326 -9.543 20.722 23.055 hybrid contribution -0.404 0.005 -0.510 0.651 sum -3.730 -9.538 20.212 22.659 Atomic orbital electron populations 1.20387 0.83719 1.05192 1.04320 1.24350 0.96586 0.82788 0.95863 1.70305 1.01299 1.29496 1.24713 1.23234 0.92609 0.89671 0.97279 1.19940 0.93626 0.98742 0.97105 1.20014 0.80300 0.79369 0.90077 1.90741 1.51636 1.50970 1.45663 1.46040 1.33698 1.47431 1.09609 1.20491 0.94099 0.95208 0.80293 1.21042 0.94470 0.96218 0.86484 1.42313 1.18781 1.66558 1.09485 1.19222 0.97669 1.25785 0.93367 0.91401 1.24666 0.96928 1.01900 0.97581 1.69646 1.17232 1.51728 1.19933 0.86217 0.79700 0.79707 0.80797 1.21888 1.21909 1.20879 1.21906 0.99137 0.95911 0.99634 1.21471 0.95397 0.98103 1.00046 1.21552 0.97315 0.95619 1.01246 1.21602 0.98353 0.96294 0.98705 1.21347 0.93511 0.94158 1.01843 0.88450 1.21828 1.02064 0.96690 0.99608 1.77961 0.96645 1.12238 1.26593 1.47918 1.04301 1.09931 1.58019 0.71643 0.89115 0.88214 0.89913 0.86803 0.86303 0.76996 0.94429 0.96023 0.78246 0.93702 0.90359 0.90028 0.92695 0.92751 0.91668 0.92739 0.92656 0.92117 0.93031 0.90972 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.51 36.01 0.38 -0.08 16 2 C 0.28 3.11 8.24 -155.69 -1.28 1.83 16 3 N -0.53 -7.61 11.19 -8.16 -0.09 -7.70 16 4 C 0.26 3.66 6.63 -156.85 -1.04 2.62 16 5 C -0.05 -0.60 6.33 -29.03 -0.18 -0.78 16 6 C 0.52 7.87 7.16 -10.98 -0.08 7.79 16 7 O -0.52 -10.33 12.33 5.55 0.07 -10.26 16 8 N -0.71 -9.71 3.74 -47.60 -0.18 -9.88 16 9 C 0.18 3.11 0.11 -131.82 -0.01 3.09 16 10 C 0.15 3.19 4.56 -4.04 -0.02 3.17 16 11 N -0.73 -18.73 5.00 -59.91 -0.30 -19.03 16 12 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 13 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 14 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 15 N -0.94 -28.60 13.06 55.49 0.72 -27.88 16 16 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.13 -2.28 4.33 -26.73 -0.12 -2.40 16 21 C -0.11 -1.61 5.77 -26.73 -0.15 -1.76 16 22 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 23 C -0.11 -1.37 5.03 -26.73 -0.13 -1.51 16 24 C -0.09 -1.38 1.78 -90.62 -0.16 -1.54 16 25 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 26 C -0.14 -2.08 8.67 37.16 0.32 -1.75 16 27 N -0.31 -4.32 12.80 32.42 0.41 -3.90 16 28 N -0.48 -5.14 7.45 32.62 0.24 -4.90 16 29 H 0.44 2.90 8.96 -182.33 -1.63 1.26 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.10 6.18 -40.82 -0.25 3.85 16 36 H 0.04 0.94 6.44 -51.93 -0.33 0.61 16 37 H 0.02 0.48 6.71 -51.93 -0.35 0.14 16 38 H 0.38 10.18 5.38 -40.82 -0.22 9.96 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 1.58 7.08 -51.93 -0.37 1.22 16 41 H 0.08 1.67 6.06 -51.93 -0.31 1.35 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 1.26 6.55 -51.93 -0.34 0.92 16 50 H 0.04 0.50 6.78 -51.93 -0.35 0.15 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -37.48 385.82 -10.25 -47.73 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -9.04 Total: 12.23 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.89 Total: -0.33 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: 0.81 Total: -73.29 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.48 -10.25 -47.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715130726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.016 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds