Wall clock time and date at job start Tue Mar 31 2020 18:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30835 * 125.96167 * 2 1 4 4 C 1.33240 * 109.83032 * 180.12269 * 3 2 1 5 5 C 1.50698 * 125.52921 * 179.85786 * 4 3 2 6 6 C 1.50706 * 109.47043 * 269.71969 * 5 4 3 7 7 O 1.21288 * 119.99787 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00138 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99993 * 174.56311 * 8 6 5 10 10 C 1.53003 * 109.47083 * 64.18709 * 9 8 6 11 11 N 1.46503 * 109.46846 * 174.97187 * 10 9 8 12 12 C 1.36936 * 120.00043 * 185.06544 * 11 10 9 13 13 H 1.08000 * 119.99590 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.00049 * 179.97438 * 12 11 10 15 15 N 1.31620 * 120.00193 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99953 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47129 * 89.99913 * 16 14 12 18 18 H 1.48495 * 109.47145 * 209.99886 * 16 14 12 19 19 H 1.48497 * 109.46839 * 329.99762 * 16 14 12 20 20 C 1.53002 * 109.46818 * 304.18935 * 9 8 6 21 21 C 1.52998 * 109.47358 * 299.99983 * 20 9 8 22 22 C 1.53007 * 109.46995 * 300.00465 * 21 20 9 23 23 C 1.53001 * 109.46956 * 59.99791 * 22 21 20 24 24 C 1.52993 * 109.47046 * 299.99615 * 23 22 21 25 25 H 1.08998 * 109.47429 * 300.00278 * 24 23 22 26 26 C 1.53006 * 109.46792 * 180.02562 * 24 23 22 27 27 N 1.30716 * 108.94743 * 359.59073 * 4 3 2 28 28 N 1.34431 * 125.96264 * 179.66941 * 2 1 3 29 29 H 0.97003 * 126.82172 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.46843 * 270.33014 * 1 2 3 31 31 H 1.09002 * 109.46954 * 30.32952 * 1 2 3 32 32 H 1.09001 * 109.47020 * 150.32850 * 1 2 3 33 33 H 1.08997 * 109.47495 * 149.71595 * 5 4 3 34 34 H 1.08998 * 109.47332 * 29.71571 * 5 4 3 35 35 H 0.97002 * 119.99786 * 354.55739 * 8 6 5 36 36 H 1.09001 * 109.47230 * 294.96845 * 10 9 8 37 37 H 1.08997 * 109.46749 * 54.97365 * 10 9 8 38 38 H 0.97001 * 119.99808 * 5.06049 * 11 10 9 39 39 H 0.96993 * 120.00117 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.46823 * 180.02562 * 20 9 8 41 41 H 1.09001 * 109.47428 * 60.00028 * 20 9 8 42 42 H 1.08994 * 109.47378 * 180.02562 * 21 20 9 43 43 H 1.08998 * 109.47237 * 59.99835 * 21 20 9 44 44 H 1.08998 * 109.46614 * 299.99752 * 22 21 20 45 45 H 1.09004 * 109.46945 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.47491 * 60.00498 * 23 22 21 47 47 H 1.09001 * 109.46481 * 179.97438 * 23 22 21 48 48 H 1.09001 * 109.47248 * 60.00493 * 26 24 23 49 49 H 1.09004 * 109.47035 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47176 * 300.00207 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0066 6 6 5.1321 1.9282 -1.4288 7 8 4.5147 1.4343 -2.3485 8 7 6.1719 2.7485 -1.6785 9 6 6.6311 2.9509 -3.0549 10 6 5.5259 3.6297 -3.8666 11 7 6.0262 3.9407 -5.2080 12 6 5.2450 4.6468 -6.0834 13 1 4.2600 4.9742 -5.7851 14 6 5.7192 4.9418 -7.3542 15 7 6.9198 4.5433 -7.7177 16 14 4.6539 5.9058 -8.5482 17 1 4.9156 7.3582 -8.3836 18 1 4.9770 5.4991 -9.9393 19 1 3.2221 5.6262 -8.2706 20 6 6.9681 1.5976 -3.6842 21 6 8.0731 0.9187 -2.8726 22 6 9.3208 1.8045 -2.8689 23 6 8.9836 3.1577 -2.2396 24 6 7.8787 3.8365 -3.0513 25 1 8.2203 3.9871 -4.0753 26 6 7.5420 5.1900 -2.4222 27 7 3.6195 -0.6168 0.0044 28 7 2.2964 -1.0881 0.0063 29 1 2.0093 -2.0146 0.0113 30 1 -0.3633 0.0059 1.0277 31 1 -0.3633 0.8870 -0.5190 32 1 -0.3633 -0.8929 -0.5087 33 1 5.5740 1.1536 0.5101 34 1 4.4698 2.5496 0.5024 35 1 6.6161 3.2049 -0.9469 36 1 4.6690 2.9606 -3.9445 37 1 5.2235 4.5511 -3.3690 38 1 6.9107 3.6463 -5.4761 39 1 7.2510 4.7492 -8.6058 40 1 7.3102 1.7482 -4.7081 41 1 6.0793 0.9666 -3.6868 42 1 8.3136 -0.0451 -3.3212 43 1 7.7316 0.7682 -1.8485 44 1 9.6623 1.9550 -3.8930 45 1 10.1079 1.3210 -2.2903 46 1 8.6420 3.0071 -1.2155 47 1 9.8726 3.7884 -2.2366 48 1 8.4309 5.8208 -2.4200 49 1 6.7544 5.6735 -3.0003 50 1 7.2005 5.0398 -1.3981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715130726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:49 Heat of formation + Delta-G solvation = 20.237579 kcal Electronic energy + Delta-G solvation = -30595.009033 eV Core-core repulsion = 26657.558712 eV Total energy + Delta-G solvation = -3937.450321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -43.15238 -41.81420 -39.24645 -36.34397 -34.84722 -34.65789 -33.52229 -33.33984 -33.16834 -31.35502 -30.04777 -28.58175 -27.75800 -26.45072 -24.82745 -23.43024 -22.68657 -22.04517 -21.75228 -21.05526 -19.83765 -19.21999 -18.89376 -18.36375 -16.88947 -16.58457 -16.49618 -16.24767 -15.97517 -15.44589 -15.32002 -15.18261 -15.16591 -14.82708 -14.72900 -14.43352 -14.23971 -13.75304 -13.62775 -13.59558 -13.26373 -13.08878 -13.00569 -12.92858 -12.78949 -12.74069 -12.68212 -12.47742 -12.27257 -12.15154 -11.87998 -11.74878 -11.38484 -11.24862 -11.14223 -11.08782 -11.00748 -10.87006 -10.56675 -10.31402 -9.90275 -8.95815 -7.95167 -5.22507 0.57968 1.43644 1.45982 1.54495 1.66173 1.72557 1.76408 2.36677 2.57173 3.04521 3.37208 3.55374 3.64584 3.82370 3.83499 3.86059 4.00324 4.14065 4.20781 4.31108 4.41761 4.44088 4.49133 4.53657 4.59142 4.66926 4.69427 4.76299 4.76846 4.92393 4.96645 5.02017 5.04426 5.11605 5.17068 5.22294 5.25241 5.27062 5.33550 5.37899 5.40068 5.45014 5.46001 5.56378 5.59427 5.76168 6.21427 6.27149 6.70427 7.08978 7.33545 7.40247 8.08451 8.35428 9.28173 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.003685 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.216041 B = 7597.206604 C = 9425.020120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.570 5.570 4 C 0.237 3.763 5 C -0.044 4.044 6 C 0.517 3.483 7 O -0.569 6.569 8 N -0.697 5.697 9 C 0.199 3.801 10 C 0.152 3.848 11 N -0.730 5.730 12 C -0.244 4.244 13 H 0.063 0.937 14 C -0.069 4.069 15 N -0.965 5.965 16 Si 0.971 3.029 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.122 4.122 21 C -0.104 4.104 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.085 4.085 25 H 0.055 0.945 26 C -0.140 4.140 27 N -0.335 5.335 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.417 0.583 36 H 0.002 0.998 37 H 0.020 0.980 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.032 0.968 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -9.180 24.392 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.300 5.300 4 C -0.046 4.046 5 C -0.085 4.085 6 C 0.303 3.697 7 O -0.448 6.448 8 N -0.352 5.352 9 C 0.112 3.888 10 C 0.025 3.975 11 N -0.374 5.374 12 C -0.376 4.376 13 H 0.081 0.919 14 C -0.262 4.262 15 N -0.616 5.616 16 Si 0.800 3.200 17 H -0.209 1.209 18 H -0.219 1.219 19 H -0.202 1.202 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.104 4.104 25 H 0.074 0.926 26 C -0.198 4.198 27 N -0.165 5.165 28 N -0.196 5.196 29 H 0.302 0.698 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.256 0.744 36 H 0.020 0.980 37 H 0.038 0.962 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.052 0.948 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.027 -9.492 23.721 25.728 hybrid contribution -0.621 -0.079 -1.440 1.571 sum -3.648 -9.571 22.281 24.522 Atomic orbital electron populations 1.20625 0.80344 1.06121 1.06223 1.25201 0.98272 0.82145 0.93875 1.70302 1.01888 1.31315 1.26525 1.23709 0.93412 0.90130 0.97372 1.20048 0.94141 0.99977 0.94377 1.20719 0.79494 0.78283 0.91231 1.90736 1.53363 1.52916 1.47760 1.45769 1.33527 1.47248 1.08606 1.20063 0.93058 0.94363 0.81274 1.21021 0.95281 0.95591 0.85645 1.42395 1.18236 1.66050 1.10755 1.19532 0.97826 1.25936 0.94334 0.91868 1.25464 0.98311 1.03239 0.99168 1.69802 1.18735 1.52914 1.20171 0.85180 0.78176 0.78491 0.78171 1.20870 1.21863 1.20236 1.21761 0.99193 0.96407 0.98668 1.21419 0.94704 0.98015 1.00014 1.21550 0.97109 0.95959 1.00872 1.21590 0.97584 0.95617 0.99346 1.21243 0.93671 0.94936 1.00553 0.92637 1.21787 1.01557 0.95720 1.00696 1.77840 0.98623 1.12497 1.27554 1.47861 1.03384 1.10890 1.57481 0.69769 0.86536 0.88889 0.87313 0.83347 0.83589 0.74430 0.98025 0.96218 0.78966 0.93939 0.94030 0.93214 0.92686 0.90961 0.93685 0.89562 0.89419 0.90333 0.91517 0.94840 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.28 5.97 8.24 138.22 1.14 7.11 16 3 N -0.57 -16.16 11.19 -179.72 -2.01 -18.17 16 4 C 0.24 6.62 6.63 138.63 0.92 7.54 16 5 C -0.04 -0.92 6.33 29.10 0.18 -0.74 16 6 C 0.52 15.39 7.16 87.66 0.63 16.02 16 7 O -0.57 -23.75 12.33 -3.05 -0.04 -23.79 16 8 N -0.70 -17.97 3.74 -422.90 -1.58 -19.55 16 9 C 0.20 6.85 0.11 3.60 0.00 6.85 16 10 C 0.15 7.05 4.56 86.38 0.39 7.45 16 11 N -0.73 -40.00 5.00 -343.44 -1.72 -41.72 16 12 C -0.24 -14.73 9.99 84.03 0.84 -13.89 16 13 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 14 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 15 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 16 Si 0.97 48.58 29.55 68.60 2.03 50.60 16 17 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 20 C -0.12 -4.57 4.33 30.59 0.13 -4.44 16 21 C -0.10 -2.88 5.77 30.60 0.18 -2.70 16 22 C -0.12 -2.77 5.92 30.60 0.18 -2.59 16 23 C -0.10 -2.23 5.03 30.59 0.15 -2.07 16 24 C -0.08 -2.58 1.78 -10.79 -0.02 -2.59 16 25 H 0.06 2.18 6.67 -2.39 -0.02 2.17 16 26 C -0.14 -3.83 8.67 71.98 0.62 -3.21 16 27 N -0.34 -9.28 12.80 -51.33 -0.66 -9.93 16 28 N -0.48 -9.73 7.45 -50.70 -0.38 -10.10 16 29 H 0.45 5.49 8.96 -213.09 -1.91 3.58 16 30 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.42 7.10 6.18 -92.71 -0.57 6.53 16 36 H 0.00 0.10 6.44 -2.39 -0.02 0.08 16 37 H 0.02 0.92 6.71 -2.39 -0.02 0.91 16 38 H 0.38 21.43 5.38 -92.71 -0.50 20.93 16 39 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.04 1.83 7.08 -2.39 -0.02 1.81 16 41 H 0.05 2.18 6.06 -2.39 -0.01 2.16 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.76 7.54 -2.39 -0.02 1.74 16 44 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.09 1.36 6.95 -2.39 -0.02 1.34 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.03 1.17 6.55 -2.39 -0.02 1.15 16 50 H 0.08 1.56 6.78 -2.39 -0.02 1.54 16 Total: -1.00 -88.25 385.82 0.50 -87.75 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -1.99 Total: 36.55 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.57 Total: 9.03 kcal Atomic # 7 Polarization: -154.08 SS G_CDS: -6.06 Total: -160.14 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.79 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -88.25 0.50 -87.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715130726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.985 kcal (2) G-P(sol) polarization free energy of solvation -88.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds