Wall clock time and date at job start Tue Mar 31 2020 18:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30821 * 125.96582 * 2 1 4 4 C 1.33239 * 109.83119 * 179.86649 * 3 2 1 5 5 C 1.50704 * 125.52553 * 180.12784 * 4 3 2 6 6 C 1.50703 * 109.46892 * 270.29232 * 5 4 3 7 7 O 1.21275 * 120.00291 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99868 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00226 * 175.44467 * 8 6 5 10 10 C 1.53001 * 109.46453 * 61.89316 * 9 8 6 11 11 N 1.46497 * 109.47374 * 56.14140 * 10 9 8 12 12 C 1.36935 * 120.00334 * 175.02801 * 11 10 9 13 13 H 1.08004 * 119.99890 * 359.97438 * 12 11 10 14 14 C 1.38806 * 120.00396 * 179.97438 * 12 11 10 15 15 N 1.31625 * 119.99911 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00301 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47017 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47213 * 119.99677 * 16 14 12 19 19 H 1.48493 * 109.46852 * 240.00011 * 16 14 12 20 20 C 1.52996 * 109.47206 * 181.89183 * 9 8 6 21 21 C 1.53000 * 109.47164 * 60.00115 * 20 9 8 22 22 C 1.53003 * 109.46948 * 60.00002 * 21 20 9 23 23 C 1.53005 * 109.47250 * 300.00081 * 22 21 20 24 24 C 1.52994 * 109.46891 * 301.89516 * 9 8 6 25 25 H 1.09000 * 109.47343 * 60.00162 * 24 9 8 26 26 C 1.53001 * 109.47019 * 179.97438 * 24 9 8 27 27 N 1.30712 * 108.94529 * 0.40082 * 4 3 2 28 28 N 1.34431 * 125.95612 * 180.30972 * 2 1 3 29 29 H 0.97001 * 126.82817 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.46880 * 269.69251 * 1 2 3 31 31 H 1.08998 * 109.47445 * 149.69300 * 1 2 3 32 32 H 1.08993 * 109.46784 * 29.68716 * 1 2 3 33 33 H 1.08999 * 109.47575 * 30.29218 * 5 4 3 34 34 H 1.08998 * 109.47055 * 150.29858 * 5 4 3 35 35 H 0.97004 * 119.99891 * 355.45097 * 8 6 5 36 36 H 1.09001 * 109.46944 * 176.13690 * 10 9 8 37 37 H 1.08994 * 109.47253 * 296.13446 * 10 9 8 38 38 H 0.97001 * 120.00125 * 355.02340 * 11 10 9 39 39 H 0.97000 * 119.99617 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.47150 * 180.02562 * 20 9 8 41 41 H 1.08999 * 109.47282 * 300.00203 * 20 9 8 42 42 H 1.08994 * 109.47055 * 179.97438 * 21 20 9 43 43 H 1.08996 * 109.47314 * 300.00177 * 21 20 9 44 44 H 1.08995 * 109.47245 * 59.99489 * 22 21 20 45 45 H 1.09005 * 109.47259 * 180.02562 * 22 21 20 46 46 H 1.08999 * 109.47346 * 180.02562 * 23 22 21 47 47 H 1.09008 * 109.46497 * 300.00216 * 23 22 21 48 48 H 1.09003 * 109.47059 * 59.99954 * 26 24 9 49 49 H 1.08999 * 109.47293 * 179.97438 * 26 24 9 50 50 H 1.09005 * 109.47149 * 300.00231 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0588 0.0000 4 6 3.5553 0.6886 0.0029 5 6 4.7373 1.6234 0.0066 6 6 5.1303 1.9418 -1.4130 7 8 4.5113 1.4577 -2.3367 8 7 6.1691 2.7653 -1.6561 9 6 6.6144 2.9963 -3.0326 10 6 5.4819 3.6426 -3.8331 11 7 5.0535 4.8744 -3.1659 12 6 4.1169 5.6817 -3.7544 13 1 3.6942 5.4103 -4.7105 14 6 3.7105 6.8486 -3.1220 15 7 4.2252 7.1790 -1.9565 16 14 2.4323 7.9494 -3.9244 17 1 2.0141 7.3586 -5.2211 18 1 1.2520 8.0699 -3.0313 19 1 3.0150 9.2949 -4.1591 20 6 7.8295 3.9259 -3.0263 21 6 8.9619 3.2797 -2.2257 22 6 9.3441 1.9451 -2.8689 23 6 8.1289 1.0154 -2.8751 24 6 6.9965 1.6617 -3.6756 25 1 6.1307 0.9995 -3.6801 26 6 7.4609 1.9028 -5.1134 27 7 3.6194 -0.6170 -0.0038 28 7 2.2964 -1.0882 -0.0059 29 1 2.0093 -2.0147 -0.0112 30 1 -0.3633 -0.0055 1.0277 31 1 -0.3634 -0.8872 -0.5186 32 1 -0.3633 0.8927 -0.5089 33 1 4.4706 2.5444 0.5250 34 1 5.5747 1.1483 0.5175 35 1 6.6221 3.2051 -0.9196 36 1 5.8348 3.8772 -4.8373 37 1 4.6411 2.9519 -3.8956 38 1 5.4333 5.1183 -2.3073 39 1 3.9409 7.9943 -1.5145 40 1 8.1605 4.0981 -4.0504 41 1 7.5573 4.8767 -2.5681 42 1 9.8277 3.9418 -2.2216 43 1 8.6307 3.1078 -1.2016 44 1 9.6752 2.1169 -3.8930 45 1 10.1506 1.4844 -2.2982 46 1 8.4012 0.0644 -3.3329 47 1 7.7977 0.8436 -1.8509 48 1 8.3265 2.5653 -5.1093 49 1 7.7335 0.9521 -5.5714 50 1 6.6539 2.3631 -5.6835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715130730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:00 Heat of formation + Delta-G solvation = 48.509315 kcal Electronic energy + Delta-G solvation = -30913.257799 eV Core-core repulsion = 26977.033433 eV Total energy + Delta-G solvation = -3936.224367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.07487 -40.48096 -37.91018 -34.64158 -33.56335 -33.17736 -32.30885 -31.98214 -31.20143 -29.84700 -29.17761 -27.68486 -26.23187 -24.93165 -22.87778 -22.03542 -21.87285 -21.08786 -20.35163 -19.78163 -17.99096 -17.84287 -17.07922 -16.92812 -15.74462 -15.43130 -15.27753 -14.95999 -14.41090 -14.36892 -13.94403 -13.76325 -13.57718 -13.35572 -13.15459 -12.97391 -12.89737 -12.75488 -12.59608 -12.32033 -12.20779 -11.99646 -11.79154 -11.67746 -11.38336 -11.30607 -11.01876 -10.85459 -10.72991 -10.67193 -10.18167 -10.08191 -10.01204 -9.93316 -9.89937 -9.73847 -9.55128 -9.43838 -9.06495 -8.64694 -8.36166 -6.71687 -5.64062 -2.88933 1.62670 2.63615 2.88538 3.16275 3.51541 3.57485 3.59501 3.68109 4.05448 4.56468 4.70598 4.77233 4.87560 4.95811 4.99511 5.19417 5.22248 5.26099 5.36456 5.41097 5.46479 5.59255 5.63115 5.67096 5.71737 5.73244 5.78628 5.85472 5.88742 5.90735 6.08149 6.16413 6.25125 6.28596 6.30102 6.30450 6.42273 6.47895 6.54260 6.62126 6.64271 6.70519 6.83599 7.06157 7.06537 7.27447 7.83989 8.02731 8.19342 8.56113 8.75944 9.67491 10.26960 10.62771 11.59532 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007099 B = 0.005306 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.260059 B = 5275.544109 C = 8283.054667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.521 5.521 4 C 0.261 3.739 5 C -0.053 4.053 6 C 0.531 3.469 7 O -0.523 6.523 8 N -0.709 5.709 9 C 0.185 3.815 10 C 0.141 3.859 11 N -0.724 5.724 12 C -0.225 4.225 13 H 0.067 0.933 14 C -0.016 4.016 15 N -0.936 5.936 16 Si 0.903 3.097 17 H -0.282 1.282 18 H -0.293 1.293 19 H -0.294 1.294 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.099 4.099 25 H 0.088 0.912 26 C -0.147 4.147 27 N -0.311 5.311 28 N -0.486 5.486 29 H 0.436 0.564 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.396 0.604 36 H 0.025 0.975 37 H 0.041 0.959 38 H 0.381 0.619 39 H 0.252 0.748 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -16.975 5.294 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 N -0.250 5.250 4 C -0.023 4.023 5 C -0.096 4.096 6 C 0.315 3.685 7 O -0.399 6.399 8 N -0.361 5.361 9 C 0.100 3.900 10 C 0.013 3.987 11 N -0.368 5.368 12 C -0.357 4.357 13 H 0.085 0.915 14 C -0.212 4.212 15 N -0.586 5.586 16 Si 0.735 3.265 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.221 1.221 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.146 4.146 24 C -0.119 4.119 25 H 0.107 0.893 26 C -0.205 4.205 27 N -0.140 5.140 28 N -0.205 5.205 29 H 0.281 0.719 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.231 0.769 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.215 0.785 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.310 -17.283 4.484 18.369 hybrid contribution -0.835 0.379 0.251 0.951 sum 3.475 -16.904 4.735 17.896 Atomic orbital electron populations 1.20378 0.83823 1.05114 1.04270 1.24375 0.96605 0.82756 0.96083 1.70380 1.01372 1.29280 1.23972 1.23252 0.92679 0.89488 0.96849 1.19949 0.93390 0.98903 0.97361 1.19828 0.79763 0.78947 0.89938 1.90658 1.51498 1.52308 1.45430 1.45827 1.33765 1.47548 1.08937 1.20502 0.94286 0.93977 0.81270 1.21149 0.94429 0.89254 0.93883 1.42212 1.49057 1.21845 1.23717 1.19263 1.14083 1.00436 1.01900 0.91504 1.24643 1.00666 0.98643 0.97198 1.69653 1.46846 1.25950 1.16154 0.86160 0.81411 0.80607 0.78352 1.20743 1.22023 1.22112 1.21808 0.93427 0.98897 1.01733 1.21549 0.98346 0.96380 0.99326 1.21576 0.97366 0.95845 1.00895 1.21485 0.95115 0.97722 1.00232 1.21411 0.98653 0.97024 0.94805 0.89339 1.21957 1.01609 1.01085 0.95850 1.77915 0.96621 1.12300 1.27131 1.47912 1.04350 1.09777 1.58438 0.71869 0.89161 0.90074 0.88149 0.85948 0.87059 0.76928 0.95733 0.94150 0.78477 0.93859 0.90430 0.90117 0.92128 0.92239 0.91838 0.92742 0.92701 0.92293 0.92260 0.93264 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.51 36.01 0.38 -0.24 16 2 C 0.28 3.70 8.24 -155.70 -1.28 2.42 16 3 N -0.52 -9.11 11.19 -8.16 -0.09 -9.20 16 4 C 0.26 4.39 6.63 -156.85 -1.04 3.35 16 5 C -0.05 -0.79 6.33 -29.03 -0.18 -0.97 16 6 C 0.53 9.37 7.23 -10.98 -0.08 9.29 16 7 O -0.52 -11.25 12.31 5.56 0.07 -11.18 16 8 N -0.71 -11.21 3.44 -47.61 -0.16 -11.37 16 9 C 0.19 3.08 0.09 -131.82 -0.01 3.07 16 10 C 0.14 3.07 4.45 -4.04 -0.02 3.05 16 11 N -0.72 -18.68 5.12 -59.91 -0.31 -18.99 16 12 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 13 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 15 N -0.94 -28.56 13.06 55.49 0.72 -27.84 16 16 Si 0.90 23.29 29.55 -169.99 -5.02 18.27 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 C -0.12 -1.81 4.36 -26.73 -0.12 -1.93 16 21 C -0.12 -1.39 5.75 -26.73 -0.15 -1.54 16 22 C -0.12 -1.32 5.65 -26.73 -0.15 -1.47 16 23 C -0.11 -1.35 5.29 -26.73 -0.14 -1.49 16 24 C -0.10 -1.49 2.01 -90.62 -0.18 -1.67 16 25 H 0.09 1.59 6.19 -51.93 -0.32 1.27 16 26 C -0.15 -2.03 8.15 37.16 0.30 -1.72 16 27 N -0.31 -4.88 12.80 32.42 0.41 -4.46 16 28 N -0.49 -5.92 7.45 32.62 0.24 -5.68 16 29 H 0.44 3.41 8.96 -182.34 -1.63 1.78 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.40 5.36 7.39 -40.82 -0.30 5.06 16 36 H 0.02 0.54 6.64 -51.93 -0.34 0.20 16 37 H 0.04 1.01 6.27 -51.93 -0.33 0.68 16 38 H 0.38 10.02 6.57 -40.82 -0.27 9.76 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.16 6.43 -51.93 -0.33 0.83 16 41 H 0.08 1.40 7.21 -51.93 -0.37 1.03 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 6.90 -51.93 -0.36 0.30 16 44 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.75 7.60 -51.92 -0.39 0.36 16 48 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.93 6.52 -51.93 -0.34 0.59 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -37.85 383.77 -10.21 -48.06 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -8.93 Total: 13.75 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.93 Total: 2.85 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: 0.82 Total: -77.54 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.85 -10.21 -48.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715130730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.573 kcal (2) G-P(sol) polarization free energy of solvation -37.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds