Wall clock time and date at job start Tue Mar 31 2020 19:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74328 * 179.89415 * 3 2 1 5 5 C 1.29841 * 109.47320 * 0.43011 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85035 * 359.86786 * 6 2 1 8 8 C 1.53321 * 108.72868 * 197.06079 * 7 6 2 9 9 H 1.08997 * 109.45590 * 69.76415 * 8 7 6 10 10 C 1.50699 * 109.42767 * 189.70210 * 8 7 6 11 11 O 1.21287 * 120.00136 * 0.10222 * 10 8 7 12 12 N 1.34775 * 120.00005 * 180.10511 * 10 8 7 13 13 C 1.46506 * 120.00092 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.46822 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47749 * 295.00065 * 14 13 12 16 16 N 1.46499 * 109.47151 * 55.00648 * 14 13 12 17 17 C 1.36936 * 120.00209 * 204.99730 * 16 14 13 18 18 H 1.07999 * 119.99786 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00162 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99895 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00187 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47282 * 89.99482 * 21 19 17 23 23 H 1.48505 * 109.47212 * 210.00033 * 21 19 17 24 24 H 1.48510 * 109.46837 * 329.99724 * 21 19 17 25 25 C 1.53003 * 109.46846 * 174.99893 * 14 13 12 26 26 C 1.53004 * 109.46792 * 60.00545 * 25 14 13 27 27 C 1.52999 * 109.47220 * 180.02562 * 25 14 13 28 28 C 1.53140 * 109.58602 * 309.72413 * 8 7 6 29 29 C 1.50792 * 128.51882 * 179.61112 * 5 4 3 30 30 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 33 33 H 1.09006 * 109.58678 * 316.82208 * 7 6 2 34 34 H 1.08999 * 109.59429 * 77.27308 * 7 6 2 35 35 H 0.96995 * 119.99999 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.47206 * 299.99789 * 13 12 10 37 37 H 1.09003 * 109.46859 * 60.00469 * 13 12 10 38 38 H 0.97001 * 119.99918 * 24.99363 * 16 14 13 39 39 H 0.97000 * 120.00351 * 180.02562 * 20 19 17 40 40 H 1.08989 * 109.47463 * 300.00395 * 25 14 13 41 41 H 1.09001 * 109.47278 * 60.00149 * 26 25 14 42 42 H 1.09004 * 109.47167 * 179.97438 * 26 25 14 43 43 H 1.08997 * 109.47156 * 299.99612 * 26 25 14 44 44 H 1.09004 * 109.46726 * 60.00534 * 27 25 14 45 45 H 1.09004 * 109.47330 * 179.97438 * 27 25 14 46 46 H 1.09001 * 109.47560 * 300.00286 * 27 25 14 47 47 H 1.09000 * 109.49827 * 309.49268 * 28 8 7 48 48 H 1.08998 * 109.52684 * 189.40872 * 28 8 7 49 49 H 1.09001 * 109.73227 * 315.62992 * 29 5 4 50 50 H 1.09004 * 109.73641 * 76.31313 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0022 5 6 3.5816 -0.6156 -0.0054 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0109 8 6 3.1554 -3.3279 0.4094 9 1 3.3630 -3.1586 1.4660 10 6 2.8688 -4.7899 0.1824 11 8 1.7984 -5.1346 -0.2720 12 7 3.8019 -5.7143 0.4842 13 6 3.5231 -7.1356 0.2640 14 6 4.7381 -7.9648 0.6849 15 1 5.5804 -7.7319 0.0335 16 7 5.0900 -7.6465 2.0709 17 6 6.3728 -7.8340 2.5120 18 1 7.1250 -8.2168 1.8382 19 6 6.7063 -7.5319 3.8252 20 7 7.9392 -7.7125 4.2492 21 14 5.4053 -6.8705 4.9908 22 1 4.7384 -8.0028 5.6823 23 1 6.0456 -5.9845 5.9961 24 1 4.3974 -6.0980 4.2208 25 6 4.4031 -9.4535 0.5728 26 6 4.0356 -9.7859 -0.8747 27 6 5.6178 -10.2827 0.9944 28 6 4.3718 -2.9114 -0.4225 29 6 4.8051 -1.4970 -0.0143 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8928 -0.5090 33 1 1.1209 -2.6645 0.6926 34 1 1.6233 -2.7902 -1.0132 35 1 4.6581 -5.4386 0.8472 36 1 2.6576 -7.4321 0.8563 37 1 3.3160 -7.3058 -0.7926 38 1 4.4144 -7.3030 2.6762 39 1 8.1723 -7.5018 5.1669 40 1 3.5609 -9.6864 1.2242 41 1 4.8779 -9.5530 -1.5261 42 1 3.7974 -10.8466 -0.9547 43 1 3.1701 -9.1952 -1.1747 44 1 5.8792 -10.0458 2.0258 45 1 5.3790 -11.3433 0.9150 46 1 6.4605 -10.0499 0.3433 47 1 4.1094 -2.9205 -1.4804 48 1 5.1907 -3.6084 -0.2448 49 1 5.5301 -1.1128 -0.7319 50 1 5.2488 -1.5209 0.9810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715502421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:23 Heat of formation + Delta-G solvation = 35.870017 kcal Electronic energy + Delta-G solvation = -29818.676205 eV Core-core repulsion = 25881.903757 eV Total energy + Delta-G solvation = -3936.772448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.50710 -40.20180 -37.78308 -36.85442 -34.54746 -34.06388 -33.25585 -31.89973 -30.96117 -30.70877 -28.42051 -27.57864 -26.38579 -25.28909 -23.73914 -23.25993 -21.90464 -21.51481 -20.66412 -19.86542 -19.48851 -18.00233 -17.41474 -16.84007 -16.29698 -16.11799 -15.72579 -15.29052 -15.02907 -14.46220 -14.30522 -14.23831 -14.16183 -13.97709 -13.67210 -13.37571 -13.15586 -13.03629 -12.95169 -12.63105 -12.50537 -12.40311 -12.27013 -11.76141 -11.74068 -11.56637 -11.38545 -11.37256 -11.21169 -10.99896 -10.75373 -10.49144 -10.39533 -10.32225 -10.26284 -10.12909 -9.91739 -9.60582 -9.14461 -9.07919 -8.99048 -7.46682 -5.92748 -3.29808 1.61070 2.15928 2.45181 2.68850 3.11379 3.21178 3.26924 3.34373 3.79335 3.99615 4.16378 4.22302 4.30279 4.43093 4.61859 4.71423 4.84665 4.89898 4.97956 5.01913 5.10677 5.11857 5.23634 5.28952 5.30634 5.40247 5.46064 5.47576 5.56245 5.60139 5.61788 5.65821 5.76128 5.77934 5.92062 6.00529 6.06371 6.16400 6.27554 6.34356 6.45300 6.47142 6.64454 6.66593 6.88782 7.23805 7.49581 7.82267 8.10844 8.25222 8.57539 9.02457 9.74579 9.93153 11.24664 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003162 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.927484 B = 8852.059257 C =10068.840987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.176 3.824 6 N -0.469 5.469 7 C 0.126 3.874 8 C -0.126 4.126 9 H 0.112 0.888 10 C 0.522 3.478 11 O -0.549 6.549 12 N -0.708 5.708 13 C 0.109 3.891 14 C 0.175 3.825 15 H 0.063 0.937 16 N -0.747 5.747 17 C -0.245 4.245 18 H 0.095 0.905 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.279 1.279 25 C -0.108 4.108 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.118 4.118 29 C -0.033 4.033 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.361 0.639 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.032 0.968 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 6.858 -10.659 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.142 5.142 4 N -0.131 5.131 5 C -0.092 4.092 6 N -0.161 5.161 7 C 0.003 3.997 8 C -0.147 4.147 9 H 0.130 0.870 10 C 0.307 3.693 11 O -0.428 6.428 12 N -0.359 5.359 13 C -0.015 4.015 14 C 0.065 3.935 15 H 0.081 0.919 16 N -0.390 5.390 17 C -0.374 4.374 18 H 0.113 0.887 19 C -0.187 4.187 20 N -0.575 5.575 21 Si 0.710 3.290 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.130 4.130 26 C -0.207 4.207 27 C -0.197 4.197 28 C -0.157 4.157 29 C -0.072 4.072 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.194 0.806 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.125 0.875 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.885 7.994 -10.941 18.024 hybrid contribution -0.899 -0.897 1.302 1.819 sum -12.784 7.098 -9.639 17.514 Atomic orbital electron populations 1.20220 0.83732 1.04582 1.04084 1.24657 0.97092 0.82764 1.04516 1.74474 0.96164 1.23708 1.19848 1.74050 1.12233 1.08063 1.18725 1.24755 0.87092 0.92579 1.04781 1.46009 1.07023 1.08481 1.54556 1.21750 0.97677 0.75232 1.05075 1.21633 0.96264 0.93134 1.03714 0.86956 1.19949 0.84339 0.86936 0.78107 1.90706 1.24355 1.82146 1.45565 1.46000 1.18761 1.06963 1.64223 1.21864 0.99322 0.79238 1.01068 1.20535 0.93861 0.91493 0.87618 0.91868 1.42841 1.09703 1.78981 1.07442 1.19026 0.85559 1.37124 0.95727 0.88707 1.24655 0.95764 1.01296 0.96939 1.69680 1.17019 1.53865 1.16916 0.86658 0.81594 0.78988 0.81748 1.21136 1.21799 1.20586 1.21698 0.98869 0.97290 0.95167 1.21942 1.00788 1.00725 0.97276 1.21828 0.96545 0.96795 1.04546 1.21750 0.96978 0.96693 1.00257 1.20254 0.91135 0.90859 1.04985 0.89583 0.90303 0.88669 0.87991 0.87945 0.75133 0.91733 0.90899 0.80574 0.92914 0.92019 0.92966 0.93354 0.93129 0.89266 0.94925 0.93731 0.90218 0.88407 0.87523 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.29 36.01 0.37 -0.11 16 2 C 0.18 2.07 8.07 -155.45 -1.25 0.81 16 3 N -0.30 -4.50 12.23 32.70 0.40 -4.10 16 4 N -0.29 -4.44 12.21 32.76 0.40 -4.04 16 5 C 0.18 2.14 7.75 -155.30 -1.20 0.94 16 6 N -0.47 -5.18 3.11 -110.86 -0.35 -5.53 16 7 C 0.13 1.17 5.46 -4.01 -0.02 1.15 16 8 C -0.13 -1.19 2.54 -91.53 -0.23 -1.42 16 9 H 0.11 1.05 8.12 -51.93 -0.42 0.63 16 10 C 0.52 6.34 7.15 -10.99 -0.08 6.27 16 11 O -0.55 -8.13 15.82 5.55 0.09 -8.04 16 12 N -0.71 -8.97 5.21 -60.29 -0.31 -9.28 16 13 C 0.11 1.48 4.73 -4.04 -0.02 1.46 16 14 C 0.17 2.72 2.18 -67.93 -0.15 2.57 16 15 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 16 N -0.75 -14.47 4.24 -53.43 -0.23 -14.70 16 17 C -0.24 -5.84 8.05 -15.06 -0.12 -5.96 16 18 H 0.10 2.46 7.62 -52.49 -0.40 2.06 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 20 N -0.93 -26.68 13.97 55.49 0.78 -25.90 16 21 Si 0.88 20.14 27.74 -169.99 -4.71 15.42 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 25 C -0.11 -1.61 2.69 -90.62 -0.24 -1.86 16 26 C -0.15 -1.82 8.84 37.16 0.33 -1.49 16 27 C -0.14 -2.35 8.26 37.16 0.31 -2.04 16 28 C -0.12 -0.96 5.22 -26.42 -0.14 -1.10 16 29 C -0.03 -0.29 6.33 -27.60 -0.17 -0.46 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.95 7.79 -51.93 -0.40 0.54 16 35 H 0.41 5.21 7.47 -40.82 -0.31 4.90 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 38 H 0.36 7.16 5.66 -40.82 -0.23 6.93 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.06 0.95 8.14 -51.94 -0.42 0.53 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.57 6.54 -51.93 -0.34 0.23 16 44 H 0.09 1.82 6.01 -51.93 -0.31 1.51 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.10 0.73 7.33 -51.93 -0.38 0.35 16 49 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -31.98 393.70 -8.95 -40.93 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.22 Total: 10.39 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.72 Total: -1.09 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.69 Total: -63.55 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.71 Total: 15.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.98 -8.95 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715502421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.797 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds