Wall clock time and date at job start Tue Mar 31 2020 20:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 N 1.46501 * 109.47004 * 179.97438 * 10 8 7 12 12 N 1.29100 * 126.01180 * 269.68841 * 11 10 8 13 13 N 1.29025 * 110.26185 * 179.77609 * 12 11 10 14 14 C 1.32907 * 108.62944 * 0.41888 * 13 12 11 15 15 C 1.34401 * 126.00239 * 90.00671 * 11 10 8 16 16 C 1.50530 * 129.25377 * 0.20335 * 15 11 10 17 17 C 1.53443 * 108.32262 * 163.46779 * 16 15 11 18 18 C 1.53103 * 109.55538 * 49.71734 * 17 16 15 19 19 C 1.50598 * 129.16073 * 179.85497 * 14 13 12 20 20 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 30 30 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 31 31 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 33 33 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 34 34 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 40 40 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 41 41 H 1.09004 * 109.69165 * 283.17005 * 16 15 11 42 42 H 1.08999 * 109.69682 * 43.75645 * 16 15 11 43 43 H 1.09005 * 109.45257 * 169.74460 * 17 16 15 44 44 H 1.08999 * 109.45169 * 289.70568 * 17 16 15 45 45 H 1.09002 * 109.45318 * 49.96781 * 18 17 16 46 46 H 1.08999 * 109.45355 * 169.92371 * 18 17 16 47 47 H 1.08999 * 109.69133 * 43.76414 * 19 14 13 48 48 H 1.08993 * 109.72914 * 283.20621 * 19 14 13 49 49 H 0.97001 * 120.00384 * 265.00562 * 20 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8395 3.6824 8 6 1.3986 -0.4540 4.9023 9 8 0.6922 0.5251 5.0172 10 6 1.8021 -1.2396 6.1233 11 7 1.2180 -0.6219 7.3165 12 7 1.7665 0.2935 8.0430 13 7 0.9839 0.6208 9.0153 14 6 -0.1219 -0.1120 8.9353 15 6 0.0195 -0.9130 7.8505 16 6 -1.0090 -1.9131 7.3943 17 6 -1.9907 -2.1559 8.5484 18 6 -2.4797 -0.8126 9.0964 19 6 -1.3318 -0.1089 9.8320 20 7 1.6525 -2.1328 1.1907 21 6 2.4317 -3.0290 0.5088 22 1 3.3343 -2.6959 0.0180 23 6 2.0615 -4.3654 0.4484 24 7 0.9613 -4.7712 1.0461 25 14 3.1248 -5.5880 -0.4812 26 1 4.1351 -6.1666 0.4407 27 1 2.2705 -6.6745 -1.0242 28 1 3.8141 -4.8949 -1.5990 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.7895 0.9487 2.5870 37 1 0.3434 -0.0736 2.4081 38 1 2.3873 -1.6228 3.5904 39 1 1.4425 -2.2644 6.0313 40 1 2.8886 -1.2423 6.2109 41 1 -1.5465 -1.5196 6.5315 42 1 -0.5181 -2.8487 7.1266 43 1 -2.8421 -2.7318 8.1856 44 1 -1.4887 -2.7103 9.3413 45 1 -2.8202 -0.1864 8.2717 46 1 -3.3046 -0.9815 9.7885 47 1 -1.6169 0.9180 10.0606 48 1 -1.1065 -0.6416 10.7558 49 1 0.8418 -2.4319 1.6314 50 1 0.7028 -5.7052 1.0042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715645549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:18 Heat of formation + Delta-G solvation = 52.590519 kcal Electronic energy + Delta-G solvation = -29687.560498 eV Core-core repulsion = 25751.513105 eV Total energy + Delta-G solvation = -3936.047392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.39406 -39.69315 -37.52348 -37.17525 -34.78247 -34.00956 -33.36314 -30.87157 -30.49178 -30.18063 -29.00252 -26.97929 -26.75281 -24.26831 -24.01328 -22.77251 -22.63299 -21.72693 -20.35899 -19.70372 -18.87522 -17.66758 -17.46359 -17.15845 -16.05433 -15.87445 -15.58691 -15.11433 -14.72573 -14.26975 -14.12209 -14.08223 -13.92216 -13.88793 -13.60627 -13.54837 -13.30865 -13.05843 -12.97712 -12.45042 -12.28896 -12.14899 -11.56218 -11.54319 -11.34756 -11.22393 -11.18602 -11.16388 -11.10004 -10.99374 -10.75582 -10.49840 -10.45670 -10.41107 -10.28813 -9.91201 -9.78826 -9.63741 -9.05523 -8.85660 -8.80491 -7.15636 -5.94171 -3.24259 1.53509 2.15627 2.52111 2.58499 3.28937 3.31840 3.38813 3.39491 4.06652 4.36245 4.43731 4.53750 4.61220 4.64672 4.74275 4.77469 4.84141 5.18461 5.22773 5.26542 5.29790 5.34913 5.39138 5.40337 5.53674 5.62801 5.64566 5.68761 5.70824 5.78136 5.84971 5.92375 5.97742 5.99994 6.05074 6.08009 6.24937 6.25048 6.27984 6.32162 6.45919 6.52631 6.60933 6.69825 6.89755 6.94966 7.55518 7.58946 8.19976 8.23648 8.55583 9.35936 9.88925 10.24979 11.27481 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002961 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.890692 B = 9452.591167 C =10550.488240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.702 5.702 8 C 0.498 3.502 9 O -0.533 6.533 10 C 0.092 3.908 11 N -0.264 5.264 12 N -0.088 5.088 13 N -0.263 5.263 14 C -0.026 4.026 15 C -0.003 4.003 16 C -0.050 4.050 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.030 4.030 20 N -0.720 5.720 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.008 4.008 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 5.383 11.637 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.207 4.207 4 C 0.060 3.940 5 H 0.073 0.927 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.281 3.719 9 O -0.410 6.410 10 C -0.033 4.033 11 N -0.055 5.055 12 N -0.066 5.066 13 N -0.128 5.128 14 C -0.165 4.165 15 C -0.137 4.137 16 C -0.089 4.089 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.069 4.069 20 N -0.362 5.362 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.997 6.890 11.781 13.973 hybrid contribution -0.131 -1.920 -1.041 2.188 sum -3.128 4.970 10.739 12.240 Atomic orbital electron populations 1.21797 0.95806 1.02326 0.99991 1.21736 0.96044 0.94646 1.00901 1.21918 1.00591 0.97139 1.01019 1.20521 0.97239 0.85918 0.90334 0.92731 1.21905 1.00657 0.94677 0.84026 1.45879 1.52244 1.32028 1.05322 1.20257 0.81426 0.85545 0.84678 1.90774 1.37314 1.26804 1.86103 1.21905 1.02535 0.97971 0.80922 1.46257 1.12839 1.26600 1.19834 1.78561 1.21474 1.05003 1.01516 1.74758 1.02142 1.20958 1.14929 1.21573 0.97842 0.98141 0.98977 1.21781 0.89877 1.04136 0.97862 1.20247 0.93480 0.95711 0.99492 1.21568 0.98539 0.97703 0.97283 1.21651 0.97348 0.96383 1.00507 1.19915 0.89061 1.01944 0.95981 1.42458 1.28986 1.01171 1.63561 1.19207 1.03671 0.88561 1.25989 0.91105 1.24717 0.97636 0.97186 1.00895 1.69653 1.24366 1.15786 1.47944 0.86232 0.79396 0.81248 0.79516 1.21708 1.21812 1.20782 0.93493 0.94074 0.91585 0.90644 0.93077 0.93137 0.93433 0.91462 0.91027 0.75043 0.84720 0.84595 0.89343 0.89962 0.90410 0.91242 0.91270 0.90674 0.89993 0.90202 0.78097 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.60 37.16 0.32 -1.93 16 2 C -0.11 -1.78 2.87 -90.62 -0.26 -2.04 16 3 C -0.15 -1.98 8.95 37.16 0.33 -1.65 16 4 C 0.17 2.89 2.22 -67.93 -0.15 2.74 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.73 4.53 -4.04 -0.02 1.71 16 7 N -0.70 -10.15 5.39 -60.29 -0.32 -10.47 16 8 C 0.50 7.39 7.90 -10.99 -0.09 7.30 16 9 O -0.53 -10.05 16.43 5.56 0.09 -9.96 16 10 C 0.09 1.07 6.72 -5.19 -0.03 1.04 16 11 N -0.26 -3.81 2.82 -58.44 -0.16 -3.98 16 12 N -0.09 -1.49 13.19 60.35 0.80 -0.69 16 13 N -0.26 -4.43 12.40 33.16 0.41 -4.02 16 14 C -0.03 -0.36 7.11 -83.12 -0.59 -0.95 16 15 C 0.00 -0.04 6.76 -82.50 -0.56 -0.60 16 16 C -0.05 -0.51 5.97 -27.74 -0.17 -0.67 16 17 C -0.11 -0.89 5.90 -26.45 -0.16 -1.04 16 18 C -0.12 -0.97 5.90 -26.46 -0.16 -1.12 16 19 C -0.03 -0.29 6.30 -27.71 -0.17 -0.47 16 20 N -0.72 -15.14 4.01 -53.43 -0.21 -15.35 16 21 C -0.24 -5.89 9.93 -15.06 -0.15 -6.04 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.22 13.06 55.49 0.72 -24.50 16 25 Si 0.91 20.61 29.55 -169.99 -5.02 15.59 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.70 6.23 -51.93 -0.32 0.38 16 30 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.66 6.68 -51.93 -0.35 0.31 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.02 6.81 -51.93 -0.35 0.67 16 37 H 0.07 1.20 6.06 -51.93 -0.31 0.88 16 38 H 0.41 5.76 8.14 -40.82 -0.33 5.43 16 39 H 0.14 1.19 7.71 -51.93 -0.40 0.79 16 40 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.38 8.80 7.80 -40.82 -0.32 8.48 16 50 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -31.88 400.27 -7.86 -39.73 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.24 Total: 11.65 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.95 Total: -4.02 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 1.23 Total: -59.02 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.88 -7.86 -39.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715645549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.325 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds