Wall clock time and date at job start Tue Mar 31 2020 20:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 N 1.46501 * 109.47004 * 179.97438 * 10 8 7 12 12 N 1.29100 * 126.01180 * 269.68841 * 11 10 8 13 13 N 1.29025 * 110.26185 * 179.77609 * 12 11 10 14 14 C 1.32907 * 108.62944 * 0.41888 * 13 12 11 15 15 C 1.34401 * 126.00239 * 90.00671 * 11 10 8 16 16 C 1.50530 * 129.25377 * 0.20335 * 15 11 10 17 17 C 1.53443 * 108.32262 * 163.46779 * 16 15 11 18 18 C 1.53103 * 109.55538 * 49.71734 * 17 16 15 19 19 C 1.50598 * 129.16073 * 179.85497 * 14 13 12 20 20 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 21 21 C 1.36943 * 119.99752 * 84.72207 * 20 4 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 4 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 4 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 30 30 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 31 31 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 33 33 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 34 34 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 39 39 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 40 40 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 41 41 H 1.09004 * 109.69165 * 283.17005 * 16 15 11 42 42 H 1.08999 * 109.69682 * 43.75645 * 16 15 11 43 43 H 1.09005 * 109.45257 * 169.74460 * 17 16 15 44 44 H 1.08999 * 109.45169 * 289.70568 * 17 16 15 45 45 H 1.09002 * 109.45318 * 49.96781 * 18 17 16 46 46 H 1.08999 * 109.45355 * 169.92371 * 18 17 16 47 47 H 1.08999 * 109.69133 * 43.76414 * 19 14 13 48 48 H 1.08993 * 109.72914 * 283.20621 * 19 14 13 49 49 H 0.97001 * 120.00384 * 265.00562 * 20 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8395 3.6824 8 6 1.3986 -0.4540 4.9023 9 8 0.6922 0.5251 5.0172 10 6 1.8021 -1.2396 6.1233 11 7 1.2180 -0.6219 7.3165 12 7 1.7665 0.2935 8.0430 13 7 0.9839 0.6208 9.0153 14 6 -0.1219 -0.1120 8.9353 15 6 0.0195 -0.9130 7.8505 16 6 -1.0090 -1.9131 7.3943 17 6 -1.9907 -2.1559 8.5484 18 6 -2.4797 -0.8126 9.0964 19 6 -1.3318 -0.1089 9.8320 20 7 1.6525 -2.1328 1.1907 21 6 2.4317 -3.0290 0.5088 22 1 3.3343 -2.6959 0.0180 23 6 2.0615 -4.3654 0.4484 24 7 0.9613 -4.7712 1.0461 25 14 3.1248 -5.5880 -0.4812 26 1 4.1351 -6.1666 0.4407 27 1 2.2705 -6.6745 -1.0242 28 1 3.8141 -4.8949 -1.5990 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.7895 0.9487 2.5870 37 1 0.3434 -0.0736 2.4081 38 1 2.3873 -1.6228 3.5904 39 1 1.4425 -2.2644 6.0313 40 1 2.8886 -1.2423 6.2109 41 1 -1.5465 -1.5196 6.5315 42 1 -0.5181 -2.8487 7.1266 43 1 -2.8421 -2.7318 8.1856 44 1 -1.4887 -2.7103 9.3413 45 1 -2.8202 -0.1864 8.2717 46 1 -3.3046 -0.9815 9.7885 47 1 -1.6169 0.9180 10.0606 48 1 -1.1065 -0.6416 10.7558 49 1 0.8418 -2.4319 1.6314 50 1 0.7028 -5.7052 1.0042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715645549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:16 Heat of formation + Delta-G solvation = 31.694105 kcal Electronic energy + Delta-G solvation = -29688.466634 eV Core-core repulsion = 25751.513105 eV Total energy + Delta-G solvation = -3936.953529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -44.45687 -40.95004 -38.90609 -37.95760 -35.86085 -35.32169 -35.06961 -32.26747 -31.60888 -31.11550 -30.15977 -28.31847 -27.97610 -25.68925 -25.09622 -24.10518 -23.62135 -22.85351 -21.50778 -20.54102 -20.17667 -19.31107 -18.63943 -18.40050 -17.23111 -17.09052 -16.81618 -16.42658 -15.91801 -15.57301 -15.35367 -15.03723 -14.92591 -14.84704 -14.80219 -14.79525 -14.50434 -14.31440 -14.13206 -13.70554 -13.46357 -13.06215 -12.86389 -12.80875 -12.69092 -12.57249 -12.51022 -12.26124 -12.24175 -12.09005 -11.98085 -11.86592 -11.82757 -11.54160 -11.50549 -11.34321 -11.23262 -10.91089 -10.76224 -10.13399 -9.83272 -8.96162 -7.89156 -5.16454 0.45494 1.17391 1.34943 1.50050 1.50883 1.53899 1.59449 2.15222 2.59472 3.17156 3.42975 3.49278 3.53823 3.71020 3.86077 3.89213 3.90219 3.90879 4.01803 4.09543 4.21673 4.31653 4.41435 4.43196 4.50516 4.55564 4.57255 4.60798 4.70096 4.85068 4.91029 4.92622 5.01061 5.07502 5.08975 5.11680 5.19690 5.20425 5.21691 5.26640 5.34465 5.40133 5.45174 5.53467 5.55621 5.59752 5.65839 6.31883 6.38940 7.01444 7.40849 7.44055 8.11253 8.37313 9.32946 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.002961 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.890692 B = 9452.591167 C =10550.488240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.697 5.697 8 C 0.502 3.498 9 O -0.576 6.576 10 C 0.091 3.909 11 N -0.266 5.266 12 N -0.125 5.125 13 N -0.296 5.296 14 C -0.038 4.038 15 C -0.006 4.006 16 C -0.051 4.051 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.031 4.031 20 N -0.723 5.723 21 C -0.230 4.230 22 H 0.074 0.926 23 C -0.062 4.062 24 N -0.961 5.961 25 Si 0.959 3.041 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.277 1.277 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.375 0.625 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 5.176 11.917 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.349 5.349 8 C 0.286 3.714 9 O -0.456 6.456 10 C -0.033 4.033 11 N -0.057 5.057 12 N -0.102 5.102 13 N -0.160 5.160 14 C -0.178 4.178 15 C -0.141 4.141 16 C -0.091 4.091 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.070 4.070 20 N -0.363 5.363 21 C -0.362 4.362 22 H 0.092 0.908 23 C -0.255 4.255 24 N -0.612 5.612 25 Si 0.790 3.210 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.202 1.202 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.255 0.745 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.114 0.886 49 H 0.208 0.792 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.962 6.717 12.046 14.107 hybrid contribution -0.133 -1.774 -1.161 2.124 sum -3.095 4.944 10.884 12.349 Atomic orbital electron populations 1.21723 0.95719 1.00654 1.01178 1.21630 0.96057 0.96230 0.99071 1.21840 1.01085 0.94963 1.02019 1.20633 0.97405 0.83994 0.91549 0.92420 1.21727 0.99819 0.95040 0.83745 1.45813 1.52004 1.31918 1.05125 1.20702 0.80335 0.84991 0.85345 1.90758 1.39301 1.28817 1.86714 1.22167 1.04145 0.98410 0.78564 1.46475 1.13226 1.26065 1.19979 1.78470 1.22533 1.06579 1.02570 1.74695 1.03454 1.22214 1.15650 1.22318 0.98158 0.97502 0.99869 1.22410 0.89883 1.04304 0.97461 1.20435 0.93157 0.95354 1.00108 1.21609 0.98628 0.97861 0.96633 1.21660 0.97298 0.96002 1.00505 1.20118 0.88120 1.02589 0.96185 1.42502 1.28217 1.02556 1.63069 1.19481 1.03373 0.88897 1.24448 0.90799 1.25291 0.98867 0.98789 1.02589 1.69777 1.25995 1.15423 1.49962 0.85366 0.77896 0.79191 0.78578 1.21484 1.23129 1.20228 0.92680 0.92530 0.94610 0.92768 0.92422 0.92324 0.92109 0.90595 0.92169 0.74535 0.81611 0.82086 0.90305 0.88363 0.88443 0.90339 0.92571 0.87895 0.90024 0.88556 0.79222 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.60 71.98 0.62 -3.57 16 2 C -0.11 -3.33 2.87 -10.79 -0.03 -3.36 16 3 C -0.14 -3.43 8.95 71.98 0.64 -2.79 16 4 C 0.17 5.69 2.22 44.99 0.10 5.79 16 5 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.64 4.53 86.38 0.39 4.03 16 7 N -0.70 -19.44 5.39 -463.06 -2.49 -21.94 16 8 C 0.50 14.51 7.90 87.66 0.69 15.20 16 9 O -0.58 -21.74 16.43 -3.03 -0.05 -21.79 16 10 C 0.09 2.00 6.72 85.63 0.58 2.58 16 11 N -0.27 -7.55 2.82 -338.79 -0.95 -8.51 16 12 N -0.12 -4.27 13.19 37.02 0.49 -3.78 16 13 N -0.30 -10.15 12.40 -48.99 -0.61 -10.75 16 14 C -0.04 -1.05 7.11 41.75 0.30 -0.75 16 15 C -0.01 -0.16 6.76 41.50 0.28 0.12 16 16 C -0.05 -0.96 5.97 29.94 0.18 -0.78 16 17 C -0.11 -1.44 5.90 30.78 0.18 -1.26 16 18 C -0.12 -1.62 5.90 30.77 0.18 -1.44 16 19 C -0.03 -0.57 6.30 29.96 0.19 -0.39 16 20 N -0.72 -30.12 4.01 -322.94 -1.30 -31.42 16 21 C -0.23 -10.99 9.93 84.03 0.83 -10.16 16 22 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 23 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 24 N -0.96 -52.49 13.06 21.65 0.28 -52.21 16 25 Si 0.96 42.25 29.55 68.60 2.03 44.28 16 26 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.05 1.60 6.23 -2.39 -0.01 1.58 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.03 1.31 7.75 -2.39 -0.02 1.29 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.34 6.68 -2.39 -0.02 1.32 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.08 2.19 6.81 -2.39 -0.02 2.18 16 37 H 0.06 1.98 6.06 -2.39 -0.01 1.97 16 38 H 0.42 11.11 8.14 -92.71 -0.75 10.35 16 39 H 0.17 2.56 7.71 -2.39 -0.02 2.54 16 40 H 0.16 2.68 8.14 -2.39 -0.02 2.67 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 43 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.08 0.92 8.12 -2.39 -0.02 0.91 16 45 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.38 17.21 7.80 -92.71 -0.72 16.49 16 50 H 0.25 13.46 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -70.10 400.27 2.48 -67.62 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.52 Total: 37.98 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.60 Total: 0.51 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -4.58 Total: -128.61 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -70.10 2.48 -67.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715645549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.314 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds