Wall clock time and date at job start Tue Mar 31 2020 20:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 N 1.29105 * 126.00807 * 269.69102 * 11 10 8 13 13 N 1.29028 * 110.26065 * 179.77123 * 12 11 10 14 14 C 1.32905 * 108.62965 * 0.41778 * 13 12 11 15 15 C 1.34401 * 126.00611 * 89.99476 * 11 10 8 16 16 C 1.50533 * 129.25780 * 0.21952 * 15 11 10 17 17 C 1.53431 * 108.32504 * 163.45712 * 16 15 11 18 18 C 1.53110 * 109.55503 * 49.71808 * 17 16 15 19 19 C 1.50605 * 129.15853 * 179.86145 * 14 13 12 20 20 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 21 21 C 1.36938 * 120.00226 * 275.00057 * 20 4 2 22 22 H 1.08003 * 119.99566 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00578 * 180.02562 * 21 20 4 24 24 N 1.31630 * 119.99516 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00700 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46883 * 59.99698 * 25 23 21 27 27 H 1.48496 * 109.47523 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47194 * 300.00466 * 25 23 21 29 29 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 30 30 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 33 33 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 34 34 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 36 36 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 37 37 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 38 38 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 40 40 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 41 41 H 1.09008 * 109.68686 * 283.16361 * 16 15 11 42 42 H 1.08995 * 109.69483 * 43.74446 * 16 15 11 43 43 H 1.09005 * 109.45529 * 169.74279 * 17 16 15 44 44 H 1.08993 * 109.45995 * 289.70632 * 17 16 15 45 45 H 1.08994 * 109.45211 * 49.96860 * 18 17 16 46 46 H 1.08997 * 109.45336 * 169.92289 * 18 17 16 47 47 H 1.08993 * 109.69297 * 43.75709 * 19 14 13 48 48 H 1.09006 * 109.72190 * 283.19677 * 19 14 13 49 49 H 0.96996 * 119.99960 * 95.00040 * 20 4 2 50 50 H 0.97001 * 119.99721 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 7 1.7755 -6.2673 3.8310 12 7 0.6497 -6.7658 4.2197 13 7 0.6340 -8.0409 4.0231 14 6 1.7972 -8.4030 3.4919 15 6 2.5363 -7.2732 3.3664 16 6 3.9335 -7.2312 2.8079 17 6 4.4968 -8.6583 2.8094 18 6 3.4861 -9.6088 2.1618 19 6 2.2710 -9.7731 3.0840 20 7 1.4559 -0.1036 2.4424 21 6 2.0440 1.0003 2.9997 22 1 2.9389 1.4154 2.5599 23 6 1.4909 1.5853 4.1305 24 7 0.4006 1.0790 4.6668 25 14 2.2936 3.0907 4.8912 26 1 2.3232 4.1921 3.8955 27 1 1.5142 3.5197 6.0802 28 1 3.6812 2.7574 5.3020 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.1410 -2.6764 0.3508 37 1 0.5565 -2.2706 1.0528 38 1 2.4584 -2.3550 3.1388 39 1 3.2378 -4.7763 4.0241 40 1 1.6538 -4.3770 4.7312 41 1 3.9100 -6.8466 1.7881 42 1 4.5582 -6.5891 3.4288 43 1 5.4294 -8.6812 2.2457 44 1 4.6851 -8.9733 3.8357 45 1 3.1630 -9.1983 1.2053 46 1 3.9531 -10.5804 2.0007 47 1 1.4745 -10.2941 2.5527 48 1 2.5557 -10.3424 3.9688 49 1 0.6524 -0.4766 2.8376 50 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715645551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:24 Heat of formation + Delta-G solvation = 54.054720 kcal Electronic energy + Delta-G solvation = -29587.785283 eV Core-core repulsion = 25651.801384 eV Total energy + Delta-G solvation = -3935.983900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.40872 -39.67744 -37.48448 -37.23451 -34.81099 -34.11922 -32.99624 -30.92626 -30.34916 -30.20399 -29.09966 -27.43948 -26.40211 -24.32095 -23.87918 -22.82441 -22.55650 -21.49000 -20.37122 -19.75602 -18.92838 -17.77828 -17.42661 -17.17874 -16.05153 -15.70736 -15.53312 -15.07055 -14.89065 -14.35681 -14.22570 -14.14975 -13.97217 -13.83130 -13.77816 -13.46490 -13.28328 -13.07375 -12.64530 -12.36483 -12.32146 -11.95845 -11.58189 -11.38590 -11.37913 -11.25845 -11.22530 -11.09591 -11.01581 -10.89724 -10.67453 -10.53149 -10.41705 -10.36057 -10.23132 -10.02559 -9.65932 -9.54868 -9.02162 -8.87631 -8.83430 -7.12686 -5.90260 -3.20093 1.51889 2.14501 2.51520 2.57623 3.28344 3.33330 3.39131 3.40834 4.02013 4.30817 4.45750 4.47134 4.53868 4.63365 4.67980 4.78177 4.79589 5.11918 5.22093 5.24721 5.25464 5.33379 5.34931 5.41881 5.53749 5.62361 5.65248 5.69924 5.73792 5.77307 5.86523 5.94478 5.98652 6.00662 6.12836 6.22407 6.27299 6.30701 6.42485 6.49015 6.54355 6.59600 6.73051 6.76954 7.00134 7.22511 7.57527 7.58516 8.19763 8.26829 8.55630 9.38907 9.92459 10.28530 11.31116 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002648 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.178034 B =10569.943798 C =11280.892292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.054 0.946 6 C 0.113 3.887 7 N -0.702 5.702 8 C 0.499 3.501 9 O -0.533 6.533 10 C 0.092 3.908 11 N -0.263 5.263 12 N -0.082 5.082 13 N -0.263 5.263 14 C -0.025 4.025 15 C -0.009 4.009 16 C -0.047 4.047 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.030 4.030 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.413 0.587 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.386 0.614 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.430 -15.909 -4.900 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.058 3.942 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.354 5.354 8 C 0.281 3.719 9 O -0.410 6.410 10 C -0.033 4.033 11 N -0.054 5.054 12 N -0.059 5.059 13 N -0.128 5.128 14 C -0.164 4.164 15 C -0.143 4.143 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.069 4.069 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.250 0.750 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.220 0.780 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.708 -15.850 -4.821 18.716 hybrid contribution 1.188 1.271 0.461 1.800 sum 9.896 -14.578 -4.360 18.151 Atomic orbital electron populations 1.21778 0.95639 1.00627 1.01814 1.21615 0.96227 0.97214 0.97833 1.21842 0.99525 0.96314 1.02225 1.20546 0.96912 0.88125 0.88628 0.92774 1.21812 1.00878 0.93593 0.84812 1.45859 1.60468 1.08484 1.20589 1.20257 0.80258 0.83197 0.88178 1.90777 1.42001 1.64920 1.43299 1.21908 1.04137 0.76913 1.00379 1.46282 1.11254 1.07735 1.40175 1.78635 1.03427 1.04057 1.19805 1.74789 1.19476 1.03079 1.15436 1.21582 0.91928 0.96827 1.06104 1.21735 0.98180 0.88098 1.06244 1.20209 0.88143 0.99098 1.01207 1.21566 0.98496 0.93111 1.01925 1.21645 0.95258 0.99944 0.99016 1.19917 0.97488 0.90000 0.99543 1.42433 1.31940 1.33249 1.28391 1.19130 1.07180 1.04076 1.06713 0.90970 1.24726 0.97735 0.99437 0.98627 1.69647 1.21805 1.42289 1.23833 0.86351 0.78382 0.83185 0.78719 1.21283 1.21799 1.21320 0.90919 0.94341 0.93849 0.93275 0.89529 0.94142 0.94799 0.91754 0.91165 0.74998 0.85107 0.84183 0.89543 0.90226 0.90543 0.91204 0.91290 0.90676 0.89936 0.90176 0.78005 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.74 37.16 0.32 -2.03 16 2 C -0.11 -1.72 2.74 -90.61 -0.25 -1.97 16 3 C -0.14 -2.38 8.46 37.16 0.31 -2.07 16 4 C 0.17 2.82 2.29 -67.93 -0.16 2.66 16 5 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 6 C 0.11 1.75 5.10 -4.04 -0.02 1.73 16 7 N -0.70 -10.02 5.39 -60.30 -0.32 -10.35 16 8 C 0.50 7.36 7.90 -10.98 -0.09 7.27 16 9 O -0.53 -10.06 16.43 5.55 0.09 -9.96 16 10 C 0.09 1.06 6.72 -5.19 -0.03 1.03 16 11 N -0.26 -3.79 2.82 -58.43 -0.16 -3.95 16 12 N -0.08 -1.43 13.19 60.35 0.80 -0.63 16 13 N -0.26 -4.49 12.40 33.17 0.41 -4.08 16 14 C -0.02 -0.34 7.11 -83.12 -0.59 -0.93 16 15 C -0.01 -0.11 6.76 -82.49 -0.56 -0.67 16 16 C -0.05 -0.41 5.97 -27.74 -0.17 -0.57 16 17 C -0.11 -0.74 5.90 -26.45 -0.16 -0.90 16 18 C -0.12 -0.86 5.90 -26.46 -0.16 -1.01 16 19 C -0.03 -0.28 6.30 -27.71 -0.17 -0.46 16 20 N -0.72 -14.90 3.53 -53.43 -0.19 -15.09 16 21 C -0.24 -5.66 7.75 -15.06 -0.12 -5.78 16 22 H 0.07 1.67 7.32 -52.48 -0.38 1.29 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -25.51 13.06 55.49 0.72 -24.78 16 25 Si 0.90 20.61 29.55 -169.99 -5.02 15.58 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.07 1.42 7.47 -51.93 -0.39 1.04 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.73 5.99 -51.93 -0.31 1.42 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.20 6.34 -51.93 -0.33 0.88 16 38 H 0.41 5.68 8.14 -40.82 -0.33 5.35 16 39 H 0.13 0.97 7.71 -51.92 -0.40 0.57 16 40 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.08 0.53 7.87 -51.93 -0.41 0.13 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.39 8.92 7.80 -40.82 -0.32 8.60 16 50 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 398.13 15.07 6.00 6.00 Total: -1.00 -32.03 398.13 -7.86 -39.89 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -8.26 Total: 11.39 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.92 Total: -4.01 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 1.25 Total: -58.88 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.03 -7.86 -39.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715645551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.943 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds