Wall clock time and date at job start Tue Mar 31 2020 20:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 N 1.29105 * 126.00807 * 269.69102 * 11 10 8 13 13 N 1.29028 * 110.26065 * 179.77123 * 12 11 10 14 14 C 1.32905 * 108.62965 * 0.41778 * 13 12 11 15 15 C 1.34401 * 126.00611 * 89.99476 * 11 10 8 16 16 C 1.50533 * 129.25780 * 0.21952 * 15 11 10 17 17 C 1.53431 * 108.32504 * 163.45712 * 16 15 11 18 18 C 1.53110 * 109.55503 * 49.71808 * 17 16 15 19 19 C 1.50605 * 129.15853 * 179.86145 * 14 13 12 20 20 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 21 21 C 1.36938 * 120.00226 * 275.00057 * 20 4 2 22 22 H 1.08003 * 119.99566 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00578 * 180.02562 * 21 20 4 24 24 N 1.31630 * 119.99516 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00700 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46883 * 59.99698 * 25 23 21 27 27 H 1.48496 * 109.47523 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47194 * 300.00466 * 25 23 21 29 29 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 30 30 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 33 33 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 34 34 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 36 36 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 37 37 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 38 38 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 40 40 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 41 41 H 1.09008 * 109.68686 * 283.16361 * 16 15 11 42 42 H 1.08995 * 109.69483 * 43.74446 * 16 15 11 43 43 H 1.09005 * 109.45529 * 169.74279 * 17 16 15 44 44 H 1.08993 * 109.45995 * 289.70632 * 17 16 15 45 45 H 1.08994 * 109.45211 * 49.96860 * 18 17 16 46 46 H 1.08997 * 109.45336 * 169.92289 * 18 17 16 47 47 H 1.08993 * 109.69297 * 43.75709 * 19 14 13 48 48 H 1.09006 * 109.72190 * 283.19677 * 19 14 13 49 49 H 0.96996 * 119.99960 * 95.00040 * 20 4 2 50 50 H 0.97001 * 119.99721 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 7 1.7755 -6.2673 3.8310 12 7 0.6497 -6.7658 4.2197 13 7 0.6340 -8.0409 4.0231 14 6 1.7972 -8.4030 3.4919 15 6 2.5363 -7.2732 3.3664 16 6 3.9335 -7.2312 2.8079 17 6 4.4968 -8.6583 2.8094 18 6 3.4861 -9.6088 2.1618 19 6 2.2710 -9.7731 3.0840 20 7 1.4559 -0.1036 2.4424 21 6 2.0440 1.0003 2.9997 22 1 2.9389 1.4154 2.5599 23 6 1.4909 1.5853 4.1305 24 7 0.4006 1.0790 4.6668 25 14 2.2936 3.0907 4.8912 26 1 2.3232 4.1921 3.8955 27 1 1.5142 3.5197 6.0802 28 1 3.6812 2.7574 5.3020 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.1410 -2.6764 0.3508 37 1 0.5565 -2.2706 1.0528 38 1 2.4584 -2.3550 3.1388 39 1 3.2378 -4.7763 4.0241 40 1 1.6538 -4.3770 4.7312 41 1 3.9100 -6.8466 1.7881 42 1 4.5582 -6.5891 3.4288 43 1 5.4294 -8.6812 2.2457 44 1 4.6851 -8.9733 3.8357 45 1 3.1630 -9.1983 1.2053 46 1 3.9531 -10.5804 2.0007 47 1 1.4745 -10.2941 2.5527 48 1 2.5557 -10.3424 3.9688 49 1 0.6524 -0.4766 2.8376 50 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715645551.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:23 Heat of formation + Delta-G solvation = 32.472646 kcal Electronic energy + Delta-G solvation = -29588.721152 eV Core-core repulsion = 25651.801384 eV Total energy + Delta-G solvation = -3936.919769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.44756 -40.91819 -38.88920 -37.94125 -35.86936 -35.43244 -34.73044 -32.08183 -31.57079 -31.10384 -30.31857 -28.70944 -27.78198 -25.59724 -25.08549 -23.94778 -23.59216 -22.63249 -21.51908 -20.52492 -20.28451 -19.29022 -18.66809 -18.39665 -17.11094 -16.93522 -16.78356 -16.32677 -15.97585 -15.88141 -15.25720 -15.10646 -14.86705 -14.84889 -14.80448 -14.66341 -14.52454 -14.39465 -13.85932 -13.65897 -13.29952 -13.04067 -12.87526 -12.77775 -12.69766 -12.54729 -12.45253 -12.23646 -12.17327 -11.98142 -11.96234 -11.90043 -11.80581 -11.51232 -11.38192 -11.32565 -11.17775 -10.89020 -10.73758 -10.13458 -9.82580 -8.93032 -7.84786 -5.10980 0.47469 1.19283 1.35713 1.51313 1.51822 1.53944 1.58474 2.16723 2.61931 3.18878 3.45986 3.50691 3.56379 3.72209 3.89312 3.90304 3.92157 3.94040 4.04068 4.12046 4.27185 4.34501 4.42603 4.44769 4.58015 4.59317 4.62362 4.66460 4.73401 4.93002 4.94530 4.97306 5.03139 5.10223 5.10429 5.20946 5.21573 5.23496 5.26039 5.32983 5.35149 5.45612 5.47333 5.57205 5.58757 5.65060 5.81123 6.34936 6.40499 7.03095 7.43902 7.45933 8.15654 8.40137 9.37617 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002648 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.178034 B =10569.943798 C =11280.892292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.171 3.829 5 H 0.066 0.934 6 C 0.121 3.879 7 N -0.695 5.695 8 C 0.502 3.498 9 O -0.577 6.577 10 C 0.091 3.909 11 N -0.266 5.266 12 N -0.133 5.133 13 N -0.300 5.300 14 C -0.042 4.042 15 C -0.004 4.004 16 C -0.049 4.049 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.032 4.032 20 N -0.721 5.721 21 C -0.210 4.210 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.954 3.046 26 H -0.286 1.286 27 H -0.309 1.309 28 H -0.276 1.276 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.418 0.582 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.372 0.628 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 -16.651 -6.324 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.195 4.195 4 C 0.062 3.938 5 H 0.084 0.916 6 C -0.003 4.003 7 N -0.347 5.347 8 C 0.286 3.714 9 O -0.457 6.457 10 C -0.033 4.033 11 N -0.057 5.057 12 N -0.110 5.110 13 N -0.164 5.164 14 C -0.182 4.182 15 C -0.138 4.138 16 C -0.088 4.088 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.071 4.071 20 N -0.361 5.361 21 C -0.342 4.342 22 H 0.099 0.901 23 C -0.262 4.262 24 N -0.619 5.619 25 Si 0.786 3.214 26 H -0.213 1.213 27 H -0.236 1.236 28 H -0.203 1.203 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.255 0.745 39 H 0.197 0.803 40 H 0.166 0.834 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.205 0.795 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.236 -16.574 -6.269 21.535 hybrid contribution 0.139 1.465 0.755 1.654 sum 12.376 -15.109 -5.515 20.294 Atomic orbital electron populations 1.21698 0.96301 1.00527 1.00737 1.21597 0.95577 0.97066 0.98424 1.21766 1.00215 0.96341 1.01203 1.20691 0.97129 0.88624 0.87337 0.91637 1.21663 0.99851 0.92847 0.85946 1.45785 1.60090 1.08457 1.20353 1.20704 0.79110 0.82929 0.88637 1.90761 1.43993 1.65820 1.45150 1.22180 1.07028 0.75578 0.98497 1.46508 1.10775 1.08771 1.39680 1.78547 1.05389 1.04589 1.22467 1.74709 1.21516 1.03407 1.16744 1.22386 0.91134 0.99129 1.05591 1.22524 0.99552 0.87254 1.04519 1.20482 0.85884 1.01263 1.01161 1.21612 0.99025 0.91330 1.02741 1.21663 0.94450 1.01631 0.97733 1.20129 0.98441 0.87922 1.00632 1.42522 1.31389 1.32710 1.29518 1.19424 1.06188 1.03447 1.05150 0.90089 1.25294 0.98736 1.02071 1.00148 1.69794 1.23788 1.43863 1.24430 0.85495 0.77756 0.80871 0.77300 1.21302 1.23598 1.20254 0.94536 0.92800 0.93517 0.90276 0.93171 0.92948 0.93208 0.90060 0.93163 0.74454 0.80309 0.83398 0.89672 0.87649 0.87919 0.90557 0.92433 0.87992 0.90366 0.88747 0.79538 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.74 71.98 0.63 -3.74 16 2 C -0.11 -3.13 2.74 -10.79 -0.03 -3.16 16 3 C -0.14 -4.31 8.46 71.98 0.61 -3.70 16 4 C 0.17 5.39 2.29 44.99 0.10 5.49 16 5 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.56 5.10 86.38 0.44 4.00 16 7 N -0.70 -18.90 5.39 -463.07 -2.49 -21.39 16 8 C 0.50 14.34 7.90 87.66 0.69 15.03 16 9 O -0.58 -21.74 16.43 -3.04 -0.05 -21.79 16 10 C 0.09 1.98 6.72 85.63 0.58 2.55 16 11 N -0.27 -7.55 2.82 -338.77 -0.95 -8.50 16 12 N -0.13 -4.82 13.19 37.02 0.49 -4.33 16 13 N -0.30 -10.63 12.40 -48.98 -0.61 -11.24 16 14 C -0.04 -1.13 7.11 41.75 0.30 -0.84 16 15 C 0.00 -0.09 6.76 41.50 0.28 0.19 16 16 C -0.05 -0.69 5.97 29.94 0.18 -0.51 16 17 C -0.11 -1.03 5.90 30.78 0.18 -0.85 16 18 C -0.12 -1.36 5.90 30.77 0.18 -1.17 16 19 C -0.03 -0.57 6.30 29.96 0.19 -0.38 16 20 N -0.72 -29.56 3.53 -322.94 -1.14 -30.70 16 21 C -0.21 -9.75 7.75 84.03 0.65 -9.10 16 22 H 0.08 3.59 7.32 -2.91 -0.02 3.57 16 23 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 24 N -0.97 -54.54 13.06 21.65 0.28 -54.26 16 25 Si 0.95 42.62 29.55 68.60 2.03 44.65 16 26 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.31 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.04 1.43 7.47 -2.39 -0.02 1.42 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.45 6.46 -2.39 -0.02 1.44 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.94 5.99 -2.39 -0.01 1.93 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 1.70 6.34 -2.39 -0.02 1.69 16 38 H 0.42 10.77 8.14 -92.71 -0.75 10.02 16 39 H 0.18 2.03 7.71 -2.38 -0.02 2.01 16 40 H 0.15 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.11 0.96 7.87 -2.39 -0.02 0.94 16 43 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.08 0.66 8.12 -2.39 -0.02 0.65 16 45 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 46 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 49 H 0.37 17.46 7.80 -92.71 -0.72 16.73 16 50 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.31 398.13 2.48 -70.84 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.52 Total: 36.05 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.45 Total: 0.67 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -4.42 Total: -130.42 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -73.31 2.48 -70.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715645551.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.308 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds