Wall clock time and date at job start Tue Mar 31 2020 20:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47029 * 2 1 4 4 C 1.52997 * 109.47511 * 120.00324 * 2 1 3 5 5 C 1.52992 * 109.47360 * 174.99847 * 4 2 1 6 6 N 1.46494 * 109.47292 * 179.97438 * 5 4 2 7 7 C 1.34819 * 126.59349 * 125.24055 * 6 5 4 8 8 C 1.36597 * 106.83676 * 180.13228 * 7 6 5 9 9 C 1.47524 * 125.76858 * 179.90225 * 8 7 6 10 10 O 1.21595 * 120.00258 * 359.71419 * 9 8 7 11 11 N 1.34779 * 120.00149 * 179.71874 * 9 8 7 12 12 C 1.46497 * 120.00134 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47432 * 325.00808 * 12 11 9 14 14 C 1.52999 * 109.47333 * 204.99712 * 12 11 9 15 15 N 1.46506 * 109.46684 * 55.00709 * 14 12 11 16 16 C 1.36938 * 119.99589 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99408 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00325 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99550 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47349 * 59.99998 * 20 18 16 22 22 H 1.48505 * 109.47077 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47093 * 299.99919 * 20 18 16 24 24 C 1.53009 * 109.46622 * 85.00058 * 12 11 9 25 25 C 1.52996 * 117.49844 * 8.75027 * 24 12 11 26 26 C 1.52999 * 117.50079 * 300.08711 * 24 12 11 27 27 N 1.34396 * 108.46267 * 359.63666 * 8 7 6 28 28 N 1.28770 * 109.52251 * 0.22708 * 27 8 7 29 29 H 1.09001 * 109.46447 * 299.99788 * 1 2 3 30 30 H 1.08995 * 109.47180 * 59.99432 * 1 2 3 31 31 H 1.08993 * 109.47194 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46952 * 240.00298 * 2 1 3 33 33 H 1.09005 * 109.46951 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47128 * 299.99787 * 3 2 1 35 35 H 1.08994 * 109.47562 * 60.00437 * 3 2 1 36 36 H 1.09000 * 109.47363 * 54.99431 * 4 2 1 37 37 H 1.09004 * 109.47091 * 294.99699 * 4 2 1 38 38 H 1.09000 * 109.47223 * 59.99498 * 5 4 2 39 39 H 1.09006 * 109.47407 * 300.00076 * 5 4 2 40 40 H 1.07999 * 126.58108 * 0.02562 * 7 6 5 41 41 H 0.97001 * 119.99536 * 0.02562 * 11 9 8 42 42 H 1.09000 * 109.47486 * 295.00644 * 14 12 11 43 43 H 1.09001 * 109.47362 * 174.99921 * 14 12 11 44 44 H 0.96995 * 120.00050 * 359.72237 * 15 14 12 45 45 H 0.97000 * 119.99693 * 180.02562 * 19 18 16 46 46 H 1.09000 * 115.54486 * 154.41272 * 24 12 11 47 47 H 1.08994 * 117.50040 * 359.97438 * 25 24 12 48 48 H 1.08998 * 117.50004 * 145.02314 * 25 24 12 49 49 H 1.08998 * 117.49656 * 214.97947 * 26 24 12 50 50 H 1.09001 * 117.49398 * 359.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1878 6 7 4.0533 -1.5212 2.3842 7 6 4.8352 -2.6190 2.4158 8 6 5.0422 -2.9196 3.7321 9 6 5.8416 -4.0491 4.2434 10 8 6.3812 -4.8130 3.4663 11 7 5.9737 -4.2345 5.5718 12 6 6.7671 -5.3566 6.0795 13 1 6.6506 -6.2135 5.4161 14 6 6.2848 -5.7285 7.4830 15 7 4.8454 -5.9992 7.4488 16 6 4.1880 -6.3535 8.5967 17 1 4.7306 -6.4338 9.5270 18 6 2.8240 -6.6094 8.5644 19 7 2.1628 -6.5120 7.4305 20 14 1.9273 -7.0935 10.1300 21 1 2.0651 -6.0089 11.1349 22 1 0.4893 -7.3110 9.8298 23 1 2.5147 -8.3460 10.6698 24 6 8.2420 -4.9533 6.1372 25 6 8.5831 -3.4839 5.8817 26 6 8.9137 -4.5417 4.8257 27 7 4.3993 -2.0089 4.4828 28 7 3.8018 -1.1639 3.7165 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9564 0.8899 36 1 1.6055 -1.7198 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 3.9995 0.1675 1.1418 39 1 3.8533 -1.3940 0.3000 40 1 5.2221 -3.1584 1.5639 41 1 5.5429 -3.6254 6.1917 42 1 6.4831 -4.9026 8.1662 43 1 6.8137 -6.6181 7.8251 44 1 4.3573 -5.9231 6.6141 45 1 1.2096 -6.6905 7.4081 46 1 8.8482 -5.4914 6.8660 47 1 7.7570 -2.8046 5.6720 48 1 9.4141 -3.0554 6.4419 49 1 9.9620 -4.8085 4.6918 50 1 8.3050 -4.5585 3.9216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716620933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:36 Heat of formation + Delta-G solvation = 64.161187 kcal Electronic energy + Delta-G solvation = -28970.061232 eV Core-core repulsion = 25034.515581 eV Total energy + Delta-G solvation = -3935.545651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.22391 -41.03120 -38.36316 -38.09452 -36.53020 -35.31530 -34.69270 -33.05699 -32.02441 -30.54722 -29.55888 -28.03425 -26.06124 -25.58575 -24.74708 -23.43180 -22.93895 -22.79322 -21.75767 -20.90202 -20.77553 -19.41554 -18.87214 -17.46805 -17.26991 -17.18121 -17.00925 -16.57023 -16.08589 -15.74856 -15.65086 -15.21523 -15.08690 -15.00975 -14.82488 -14.73020 -14.38147 -13.96342 -13.62050 -13.39068 -13.15578 -13.11321 -12.84894 -12.80678 -12.70439 -12.66344 -12.60709 -12.29713 -12.13758 -12.12278 -12.03502 -11.82981 -11.70955 -11.54892 -11.34659 -11.14935 -11.03285 -10.94635 -10.77135 -10.32181 -9.92733 -8.99959 -7.92711 -5.22349 0.16775 0.64692 1.12490 1.47334 1.51001 1.56686 2.14156 2.29440 2.56698 2.98433 3.21070 3.33060 3.41551 3.65479 3.73744 3.79313 3.92193 3.98771 4.00527 4.03476 4.11082 4.21057 4.25031 4.34617 4.42279 4.45362 4.52978 4.61421 4.68201 4.73234 4.81465 4.86317 4.89273 4.90906 4.97790 5.03988 5.06605 5.08874 5.16127 5.28338 5.29131 5.40549 5.42800 5.46772 5.50606 5.52071 5.57169 6.27167 6.46614 6.92803 7.17551 7.34414 8.08449 8.32110 9.30240 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003044 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.583145 B = 9196.321165 C =11831.755297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.153 4.153 4 C -0.128 4.128 5 C 0.111 3.889 6 N -0.347 5.347 7 C 0.109 3.891 8 C -0.126 4.126 9 C 0.605 3.395 10 O -0.560 6.560 11 N -0.693 5.693 12 C 0.177 3.823 13 H 0.071 0.929 14 C 0.149 3.851 15 N -0.743 5.743 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.277 1.277 24 C -0.166 4.166 25 C -0.169 4.169 26 C -0.181 4.181 27 N -0.229 5.229 28 N -0.089 5.089 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.240 0.760 41 H 0.408 0.592 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.128 0.872 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 15.452 -18.931 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C -0.211 4.211 4 C -0.166 4.166 5 C -0.008 4.008 6 N -0.131 5.131 7 C -0.049 4.049 8 C -0.266 4.266 9 C 0.391 3.609 10 O -0.439 6.439 11 N -0.342 5.342 12 C 0.073 3.927 13 H 0.089 0.911 14 C 0.022 3.978 15 N -0.386 5.386 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.185 4.185 25 C -0.206 4.206 26 C -0.218 4.218 27 N -0.102 5.102 28 N -0.069 5.069 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.256 0.744 41 H 0.243 0.757 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.205 0.795 45 H 0.057 0.943 46 H 0.146 0.854 47 H 0.097 0.903 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.666 15.895 -18.380 25.197 hybrid contribution -0.967 -0.768 0.378 1.291 sum 5.699 15.127 -18.001 24.194 Atomic orbital electron populations 1.21859 0.95148 1.01778 1.02112 1.21026 0.95915 0.96630 0.96796 1.21958 1.01670 0.95278 1.02159 1.21936 0.92949 1.01610 1.00104 1.22673 0.96032 0.99812 0.82234 1.50845 1.33428 1.19935 1.08911 1.23842 0.92559 0.88893 0.99645 1.21553 1.10798 1.02263 0.92030 1.16918 0.78873 0.82552 0.82580 1.90688 1.49697 1.46586 1.56934 1.45786 1.51440 1.30534 1.06455 1.20606 0.89022 0.88213 0.94884 0.91084 1.21058 0.84582 0.98340 0.93795 1.42518 1.04253 1.83220 1.08630 1.19608 0.91422 1.37104 0.89362 0.90210 1.25590 0.97652 1.03640 0.99968 1.69845 1.07885 1.57650 1.26594 0.85192 0.76946 0.78349 0.79132 1.20338 1.22487 1.20255 1.22623 0.94622 0.99483 1.01775 1.22928 1.03085 0.91230 1.03340 1.23303 1.01698 1.03095 0.93698 1.74674 1.05931 1.01765 1.27860 1.81883 1.21352 1.19446 0.84268 0.93445 0.91332 0.93036 0.88894 0.91412 0.91606 0.93395 0.92166 0.92064 0.86487 0.83957 0.74414 0.75657 0.94714 0.93799 0.79493 0.94264 0.85373 0.90291 0.87285 0.87509 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 71.98 0.66 -0.98 16 2 C -0.08 -0.74 2.92 -10.79 -0.03 -0.77 16 3 C -0.15 -1.17 8.95 71.98 0.64 -0.53 16 4 C -0.13 -1.69 4.89 30.59 0.15 -1.54 16 5 C 0.11 1.19 6.29 86.38 0.54 1.73 16 6 N -0.35 -7.29 3.69 -347.11 -1.28 -8.57 16 7 C 0.11 2.45 11.27 83.85 0.95 3.40 16 8 C -0.13 -4.02 6.99 40.82 0.29 -3.73 16 9 C 0.61 21.32 6.65 86.69 0.58 21.90 16 10 O -0.56 -20.67 13.89 -4.01 -0.06 -20.72 16 11 N -0.69 -24.98 3.05 -445.70 -1.36 -26.34 16 12 C 0.18 6.27 2.59 44.99 0.12 6.39 16 13 H 0.07 2.82 7.58 -2.39 -0.02 2.80 16 14 C 0.15 6.00 5.80 86.38 0.50 6.50 16 15 N -0.74 -38.67 5.44 -343.44 -1.87 -40.54 16 16 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 19 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 20 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 C -0.17 -4.65 5.71 -10.79 -0.06 -4.71 16 25 C -0.17 -4.35 9.74 30.62 0.30 -4.05 16 26 C -0.18 -4.79 9.82 30.62 0.30 -4.49 16 27 N -0.23 -8.02 12.04 -50.00 -0.60 -8.62 16 28 N -0.09 -2.72 13.65 37.02 0.51 -2.21 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.36 6.57 -2.38 -0.02 0.35 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.12 0.91 6.57 -2.39 -0.02 0.89 16 39 H 0.14 0.48 8.08 -2.38 -0.02 0.47 16 40 H 0.24 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.41 15.55 8.29 -92.71 -0.77 14.78 16 42 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.37 21.18 7.33 -92.71 -0.68 20.50 16 45 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.13 3.14 8.11 -2.39 -0.02 3.12 16 47 H 0.08 2.28 6.67 -2.39 -0.02 2.26 16 48 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 50 H 0.10 3.01 5.01 -2.39 -0.01 3.00 16 Total: -1.00 -75.25 408.09 3.39 -71.86 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.49 Total: 44.80 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 6.24 Total: 2.11 kcal Atomic # 7 Polarization: -143.09 SS G_CDS: -4.32 Total: -147.41 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.25 3.39 -71.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716620933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.019 kcal (2) G-P(sol) polarization free energy of solvation -75.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds