Wall clock time and date at job start Tue Mar 31 2020 18:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36596 * 126.57706 * 2 1 4 4 C 1.47517 * 125.77180 * 359.94914 * 3 2 1 5 5 O 1.21596 * 120.00155 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99877 * 180.02562 * 4 3 2 7 7 C 1.47022 * 125.64850 * 0.02678 * 6 4 3 8 8 C 1.54326 * 107.27217 * 181.02309 * 7 6 4 9 9 H 1.09002 * 110.72252 * 140.72974 * 8 7 6 10 10 C 1.52990 * 110.72002 * 263.82955 * 8 7 6 11 11 C 1.55158 * 102.94336 * 22.19446 * 8 7 6 12 12 H 1.08999 * 111.00529 * 82.60843 * 11 8 7 13 13 C 1.52998 * 111.00800 * 206.42484 * 11 8 7 14 14 N 1.46495 * 109.47475 * 184.99767 * 13 11 8 15 15 C 1.36936 * 120.00146 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00173 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99911 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00133 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47216 * 89.99701 * 19 17 15 21 21 H 1.48500 * 109.47068 * 209.99943 * 19 17 15 22 22 H 1.48501 * 109.47173 * 329.99836 * 19 17 15 23 23 C 1.47428 * 125.64995 * 179.72112 * 6 4 3 24 24 N 1.34403 * 108.45756 * 179.97438 * 3 2 1 25 25 N 1.28769 * 109.52257 * 359.97438 * 24 3 2 26 26 N 1.34816 * 126.58018 * 179.68077 * 2 1 3 27 27 C 1.46494 * 126.59171 * 0.02562 * 26 2 1 28 28 C 1.53004 * 109.46997 * 120.00208 * 27 26 2 29 29 C 1.53003 * 109.47303 * 239.99903 * 27 26 2 30 30 H 1.09001 * 109.46953 * 90.02655 * 1 2 3 31 31 H 1.09000 * 109.47318 * 210.02253 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.02884 * 1 2 3 33 33 H 1.09003 * 109.88116 * 300.43541 * 7 6 4 34 34 H 1.08995 * 109.88347 * 61.60734 * 7 6 4 35 35 H 1.09001 * 109.47644 * 58.54473 * 10 8 7 36 36 H 1.09001 * 109.47364 * 178.54652 * 10 8 7 37 37 H 1.08998 * 109.47208 * 298.54457 * 10 8 7 38 38 H 1.09001 * 109.47191 * 305.00173 * 13 11 8 39 39 H 1.09003 * 109.47060 * 64.99251 * 13 11 8 40 40 H 0.97000 * 119.99788 * 359.97438 * 14 13 11 41 41 H 0.97006 * 120.00454 * 180.02562 * 18 17 15 42 42 H 1.09000 * 110.36210 * 274.74371 * 23 6 4 43 43 H 1.08998 * 110.36719 * 37.06554 * 23 6 4 44 44 H 1.09001 * 109.47840 * 359.97438 * 27 26 2 45 45 H 1.09002 * 109.47156 * 179.97438 * 28 27 26 46 46 H 1.09000 * 109.46933 * 299.99904 * 28 27 26 47 47 H 1.09001 * 109.47292 * 59.99736 * 28 27 26 48 48 H 1.08998 * 109.47071 * 59.99902 * 29 27 26 49 49 H 1.08992 * 109.47444 * 180.02562 * 29 27 26 50 50 H 1.09001 * 109.46724 * 300.00747 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0011 5 8 0.6859 2.7627 -0.0016 6 7 2.7817 3.4987 -0.0015 7 6 4.2418 3.3271 -0.0015 8 6 4.8689 4.7370 0.0243 9 1 5.7455 4.7575 0.6718 10 6 5.2322 5.1938 -1.3899 11 6 3.7296 5.6135 0.6085 12 1 3.7124 5.5573 1.6969 13 6 3.8577 7.0640 0.1391 14 7 2.8405 7.8836 0.8022 15 6 2.7619 9.2247 0.5367 16 1 3.4497 9.6781 -0.1618 17 6 1.7984 10.0013 1.1654 18 7 0.9600 9.4487 2.0162 19 14 1.6908 11.8306 0.8028 20 1 0.7697 12.0554 -0.3402 21 1 1.1771 12.5432 2.0001 22 1 3.0401 12.3476 0.4601 23 6 2.4752 4.9408 -0.0083 24 7 3.5984 0.6789 0.0006 25 7 3.6300 -0.6084 0.0015 26 7 2.3105 -1.0826 0.0060 27 6 1.8864 -2.4848 0.0133 28 6 2.4296 -3.1884 -1.2320 29 6 2.4287 -3.1752 1.2664 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.5495 2.7685 0.8825 34 1 4.5531 2.7995 -0.9030 35 1 4.3376 5.1948 -2.0126 36 1 5.6488 6.2003 -1.3509 37 1 5.9692 4.5118 -1.8139 38 1 4.8489 7.4411 0.3908 39 1 3.7148 7.1105 -0.9405 40 1 2.2226 7.4762 1.4292 41 1 0.2864 9.9913 2.4554 42 1 2.3176 5.2902 -1.0287 43 1 1.5964 5.1447 0.6033 44 1 0.7975 -2.5352 0.0137 45 1 2.1145 -4.2318 -1.2264 46 1 2.0433 -2.6965 -2.1248 47 1 3.5185 -3.1381 -1.2319 48 1 2.0417 -2.6739 2.1536 49 1 2.1135 -4.2185 1.2716 50 1 3.5175 -3.1248 1.2665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716992320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:24 Heat of formation + Delta-G solvation = 66.026365 kcal Electronic energy + Delta-G solvation = -29430.109438 eV Core-core repulsion = 25494.644667 eV Total energy + Delta-G solvation = -3935.464770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.46800 -39.85810 -37.83361 -36.76691 -34.61264 -33.31126 -32.71471 -31.20814 -31.05045 -29.03410 -27.99130 -27.93166 -26.44637 -25.45548 -24.25904 -23.52210 -22.32370 -21.47148 -20.53927 -19.31956 -19.09227 -17.65782 -16.95079 -16.55259 -16.36380 -15.76197 -15.55471 -14.91191 -14.72715 -14.45286 -14.39271 -13.86982 -13.75025 -13.50823 -13.35719 -13.30827 -13.17445 -12.91372 -12.85780 -12.70207 -12.47946 -12.35975 -12.26778 -12.10014 -11.99579 -11.74994 -11.59203 -11.49753 -11.19541 -10.92350 -10.79375 -10.43832 -10.38756 -10.29475 -10.20960 -9.93789 -9.87103 -9.61276 -9.27945 -8.81336 -8.39218 -6.85837 -5.70132 -2.98927 0.95008 1.66566 1.73809 3.09444 3.33501 3.48126 3.52846 3.54698 3.83021 3.98357 4.20233 4.30758 4.32323 4.50386 4.63738 4.73597 4.77320 4.91290 4.92325 4.99608 5.09620 5.10129 5.12782 5.21156 5.36032 5.41057 5.50042 5.52527 5.61008 5.64135 5.66774 5.70299 5.76101 5.83389 6.00492 6.05971 6.09777 6.17657 6.23160 6.28109 6.31587 6.45701 6.51602 6.58098 6.78578 6.92766 7.64600 7.75486 7.81374 8.26323 8.48375 9.59441 10.17583 10.51915 11.52651 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023049 B = 0.002313 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.489054 B =12100.669887 C =12903.316940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.098 4.098 4 C 0.614 3.386 5 O -0.538 6.538 6 N -0.601 5.601 7 C 0.116 3.884 8 C -0.100 4.100 9 H 0.088 0.912 10 C -0.143 4.143 11 C -0.102 4.102 12 H 0.085 0.915 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.119 3.881 24 N -0.200 5.200 25 N -0.070 5.070 26 N -0.358 5.358 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -29.296 -5.165 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.238 4.238 4 C 0.400 3.600 5 O -0.415 6.415 6 N -0.333 5.333 7 C -0.007 4.007 8 C -0.119 4.119 9 H 0.106 0.894 10 C -0.200 4.200 11 C -0.121 4.121 12 H 0.104 0.896 13 C 0.038 3.962 14 N -0.378 5.378 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.003 4.003 24 N -0.073 5.073 25 N -0.049 5.049 26 N -0.145 5.145 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.381 -29.484 -5.230 30.263 hybrid contribution -1.233 0.928 0.072 1.545 sum 3.148 -28.556 -5.158 29.188 Atomic orbital electron populations 1.20734 0.84781 1.05382 1.04640 1.21908 0.96221 0.86344 0.97123 1.21174 0.89019 0.95244 1.18336 1.16314 0.84756 0.81888 0.77040 1.90783 1.15437 1.83284 1.52041 1.48270 1.07013 1.06719 1.71329 1.22170 0.79136 0.97028 1.02396 1.22243 0.98233 0.93428 0.98030 0.89356 1.21832 1.01308 1.01560 0.95331 1.22656 0.93033 0.95848 1.00566 0.89643 1.20637 0.93044 0.86939 0.95603 1.42396 1.37395 1.05872 1.52112 1.19208 1.12728 0.84626 1.20379 0.91197 1.24744 0.98574 0.98083 0.99657 1.69663 1.21581 1.34875 1.31971 0.86198 0.77498 0.85430 0.77111 1.21763 1.21845 1.20810 1.22413 0.99080 0.77148 1.01637 1.74719 1.18998 1.03845 1.09747 1.81909 0.96343 1.03484 1.23187 1.50609 1.06348 1.07140 1.50443 1.21635 1.00486 0.75354 0.98292 1.22153 1.03216 1.00789 0.95838 1.22161 1.03248 1.00894 0.95780 0.89065 0.90854 0.86761 0.91033 0.90983 0.92451 0.91575 0.92912 0.95858 0.95676 0.78265 0.93543 0.90940 0.89753 0.87308 0.89930 0.91719 0.90683 0.91681 0.89923 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.42 36.01 0.34 -0.47 16 2 C 0.12 1.36 7.02 -81.87 -0.57 0.78 16 3 C -0.10 -1.39 6.85 -83.55 -0.57 -1.96 16 4 C 0.61 10.07 7.85 -12.48 -0.10 9.97 16 5 O -0.54 -9.92 14.97 5.28 0.08 -9.84 16 6 N -0.60 -9.55 3.32 -171.61 -0.57 -10.13 16 7 C 0.12 1.57 5.09 -3.06 -0.02 1.55 16 8 C -0.10 -1.32 3.47 -88.79 -0.31 -1.63 16 9 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 10 C -0.14 -1.77 7.90 37.15 0.29 -1.48 16 11 C -0.10 -1.68 2.93 -88.35 -0.26 -1.94 16 12 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.17 3.29 4.54 -4.05 -0.02 3.27 16 14 N -0.73 -18.71 5.55 -59.91 -0.33 -19.05 16 15 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 19 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 C 0.12 2.06 6.01 -2.41 -0.01 2.05 16 24 N -0.20 -2.79 9.78 32.85 0.32 -2.47 16 25 N -0.07 -0.87 13.67 60.35 0.82 -0.05 16 26 N -0.36 -3.48 3.28 -50.40 -0.17 -3.64 16 27 C 0.14 0.79 3.68 -67.93 -0.25 0.54 16 28 C -0.16 -0.74 9.47 37.16 0.35 -0.39 16 29 C -0.16 -0.76 9.47 37.16 0.35 -0.41 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.38 7.17 -51.93 -0.37 0.01 16 32 H 0.11 1.21 6.43 -51.93 -0.33 0.88 16 33 H 0.07 0.97 7.62 -51.93 -0.40 0.57 16 34 H 0.07 0.95 7.43 -51.93 -0.39 0.56 16 35 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 36 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 39 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 40 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.29 7.46 -51.93 -0.39 0.90 16 43 H 0.08 1.66 8.03 -51.93 -0.42 1.24 16 44 H 0.11 0.36 6.78 -51.93 -0.35 0.01 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -34.34 399.27 -7.41 -41.74 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.26 Total: 5.20 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.02 Total: 2.47 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.80 Total: -63.34 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.34 -7.41 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716992320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.770 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds