Wall clock time and date at job start Tue Mar 31 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35366 * 127.24485 * 2 1 4 4 N 1.35034 * 107.22274 * 180.14340 * 3 2 1 5 5 C 1.46506 * 124.88249 * 179.87379 * 4 3 2 6 6 N 1.28466 * 110.23334 * 359.60036 * 4 3 2 7 7 C 1.31802 * 110.07228 * 0.25204 * 6 4 3 8 8 C 1.47712 * 126.51667 * 180.02562 * 7 6 4 9 9 O 1.21571 * 119.99952 * 179.97438 * 8 7 6 10 10 N 1.34782 * 120.00158 * 359.97024 * 8 7 6 11 11 C 1.46494 * 120.00066 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47238 * 180.02562 * 11 10 8 13 13 N 1.46900 * 109.47268 * 180.02562 * 12 11 10 14 14 C 1.46847 * 111.00259 * 45.78758 * 13 12 11 15 15 C 1.53034 * 109.52580 * 185.84197 * 14 13 12 16 16 C 1.53121 * 109.27482 * 300.82133 * 15 14 13 17 17 N 1.46501 * 109.57239 * 177.58950 * 16 15 14 18 18 C 1.36940 * 119.99956 * 85.28518 * 17 16 15 19 19 H 1.07995 * 120.00042 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00075 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00069 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00236 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47278 * 90.00096 * 22 20 18 24 24 H 1.48505 * 109.47177 * 210.00253 * 22 20 18 25 25 H 1.48500 * 109.46915 * 329.99772 * 22 20 18 26 26 C 1.53121 * 109.16153 * 57.65516 * 16 15 14 27 27 C 1.46842 * 110.99951 * 169.99768 * 13 12 11 28 28 H 1.09008 * 109.46822 * 270.27773 * 1 2 3 29 29 H 1.08992 * 109.47608 * 30.28324 * 1 2 3 30 30 H 1.09008 * 109.47013 * 150.28850 * 1 2 3 31 31 H 1.07998 * 126.38568 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46871 * 269.71642 * 5 4 3 33 33 H 1.08994 * 109.46947 * 29.71350 * 5 4 3 34 34 H 1.08997 * 109.47271 * 149.71867 * 5 4 3 35 35 H 0.97002 * 119.99620 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47232 * 299.99787 * 11 10 8 37 37 H 1.08998 * 109.47731 * 59.99584 * 11 10 8 38 38 H 1.09000 * 109.46808 * 300.00013 * 12 11 10 39 39 H 1.08993 * 109.47052 * 59.99639 * 12 11 10 40 40 H 1.09001 * 109.45713 * 305.85587 * 14 13 12 41 41 H 1.09002 * 109.45999 * 65.82359 * 14 13 12 42 42 H 1.08991 * 109.50737 * 180.88090 * 15 14 13 43 43 H 1.09008 * 109.50382 * 60.75932 * 15 14 13 44 44 H 1.08994 * 109.52150 * 297.74810 * 16 15 14 45 45 H 0.97002 * 120.00323 * 265.28067 * 17 16 15 46 46 H 0.96999 * 120.00045 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.50144 * 182.40357 * 26 16 15 48 48 H 1.08995 * 109.50343 * 62.28694 * 26 16 15 49 49 H 1.08990 * 109.46400 * 294.17491 * 27 13 12 50 50 H 1.09006 * 109.46014 * 54.15441 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0032 5 6 4.7937 1.4576 -0.0070 6 7 3.5998 -0.6694 0.0032 7 6 2.3635 -1.1263 0.0055 8 6 1.9506 -2.5445 0.0131 9 8 0.7698 -2.8338 0.0150 10 7 2.8829 -3.5179 0.0180 11 6 2.4734 -4.9244 0.0250 12 6 3.7159 -5.8173 0.0301 13 7 3.3052 -7.2277 0.0365 14 6 2.2409 -7.4705 -0.9457 15 6 1.7387 -8.9098 -0.8105 16 6 2.9038 -9.8756 -1.0433 17 7 2.4430 -11.2540 -0.8588 18 6 1.8589 -11.9258 -1.8993 19 1 1.7376 -11.4394 -2.8559 20 6 1.4228 -13.2319 -1.7247 21 7 1.5712 -13.8250 -0.5590 22 14 0.6267 -14.1486 -3.1443 23 1 1.6717 -14.8643 -3.9196 24 1 -0.3538 -15.1291 -2.6127 25 1 -0.0708 -13.1812 -4.0291 26 6 4.0185 -9.5699 -0.0389 27 6 4.4545 -8.1115 -0.1966 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8873 -0.5182 30 1 -0.3633 -0.8926 -0.5094 31 1 2.0219 2.1138 0.0004 32 1 5.0911 1.6617 -1.0356 33 1 4.5792 2.3970 0.5024 34 1 5.6026 0.9407 0.5093 35 1 3.8251 -3.2870 0.0168 36 1 1.8785 -5.1252 0.9160 37 1 1.8784 -5.1341 -0.8638 38 1 4.3111 -5.6166 -0.8607 39 1 4.3104 -5.6075 0.9192 40 1 1.4169 -6.7800 -0.7663 41 1 2.6323 -7.3153 -1.9511 42 1 0.9597 -9.0944 -1.5500 43 1 1.3345 -9.0617 0.1904 44 1 3.2831 -9.7510 -2.0575 45 1 2.5517 -11.6908 0.0005 46 1 1.2661 -14.7376 -0.4368 47 1 4.8681 -10.2262 -0.2274 48 1 3.6502 -9.7323 0.9740 49 1 4.8355 -7.9534 -1.2054 50 1 5.2382 -7.8867 0.5270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717015479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:42 Heat of formation + Delta-G solvation = 33.209173 kcal Electronic energy + Delta-G solvation = -28187.481523 eV Core-core repulsion = 24250.593693 eV Total energy + Delta-G solvation = -3936.887831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.64191 -40.69487 -39.97217 -37.14535 -35.78199 -34.83727 -34.05063 -32.89928 -31.87035 -31.46192 -29.52312 -28.78744 -27.36821 -26.05509 -24.70911 -23.90744 -23.15691 -22.19572 -21.61831 -21.09022 -20.71536 -19.09320 -18.65769 -17.61734 -17.34507 -17.16855 -16.77401 -16.57956 -16.19906 -15.77639 -15.49709 -15.43375 -15.22208 -15.08064 -14.52645 -14.49025 -14.28168 -14.10507 -14.05207 -13.93173 -13.32536 -13.25716 -13.12785 -13.03349 -12.99338 -12.87048 -12.68571 -12.52454 -12.21152 -12.16848 -12.04391 -11.84633 -11.76340 -11.51617 -11.20610 -11.13765 -10.84507 -10.34465 -10.08384 -9.68652 -9.26911 -8.98747 -7.93477 -5.21792 0.49860 1.14772 1.46133 1.48014 1.56388 1.58817 2.05941 2.32167 2.56230 3.02217 3.35600 3.39105 3.72946 3.81659 3.88754 4.00080 4.03427 4.08742 4.19784 4.34368 4.36227 4.37069 4.43430 4.46767 4.49765 4.55633 4.58752 4.70418 4.72682 4.74829 4.85545 4.89416 4.91955 4.96193 4.96991 5.05064 5.12117 5.17727 5.21038 5.34044 5.44044 5.49944 5.51085 5.61185 5.90074 6.09749 6.14219 6.29137 6.39598 6.88541 7.13763 7.34410 8.11601 8.35143 9.30086 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.001747 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.714089 B =16020.859954 C =16741.443340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.277 5.277 5 C 0.075 3.925 6 N -0.273 5.273 7 C -0.050 4.050 8 C 0.598 3.402 9 O -0.566 6.566 10 N -0.706 5.706 11 C 0.121 3.879 12 C 0.055 3.945 13 N -0.542 5.542 14 C 0.061 3.939 15 C -0.123 4.123 16 C 0.171 3.829 17 N -0.737 5.737 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.113 4.113 27 C 0.071 3.929 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.415 0.585 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.036 0.964 45 H 0.372 0.628 46 H 0.250 0.750 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.040 0.960 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 38.805 2.074 40.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.185 4.185 3 C -0.149 4.149 4 N -0.065 5.065 5 C -0.063 4.063 6 N -0.112 5.112 7 C -0.208 4.208 8 C 0.384 3.616 9 O -0.443 6.443 10 N -0.358 5.358 11 C -0.003 4.003 12 C -0.073 4.073 13 N -0.268 5.268 14 C -0.068 4.068 15 C -0.163 4.163 16 C 0.063 3.937 17 N -0.377 5.377 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.196 1.196 26 C -0.151 4.151 27 C -0.056 4.056 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.241 0.759 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.204 0.796 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.840 38.157 2.349 39.475 hybrid contribution -0.733 -0.856 -1.076 1.558 sum 9.107 37.301 1.273 38.418 Atomic orbital electron populations 1.20126 0.87932 1.02927 1.02320 1.20708 0.98164 0.91029 1.08625 1.23203 0.82882 1.01658 1.07142 1.45803 1.08733 1.03170 1.48794 1.22650 0.83230 0.94295 1.06120 1.73403 1.22427 0.95570 1.19769 1.21726 0.90789 0.94469 1.13859 1.17184 0.85060 0.83621 0.75719 1.90769 1.18325 1.83393 1.51821 1.45655 1.10352 1.05558 1.74233 1.21431 0.97458 0.79090 1.02288 1.22194 0.95627 0.86530 1.02909 1.61920 1.10393 1.04065 1.50404 1.22125 0.94911 0.96474 0.93254 1.22100 0.99126 0.94439 1.00662 1.20489 0.92820 0.83691 0.96731 1.42640 1.71813 1.11027 1.12188 1.19611 1.29833 0.95107 0.92482 0.90949 1.25550 1.03626 0.98346 0.99444 1.69826 1.54517 1.13366 1.24370 0.85161 0.77772 0.78274 0.78699 1.21307 1.22221 1.19642 1.21741 0.97928 0.96166 0.99296 1.22004 0.92113 0.90972 1.00558 0.91550 0.89384 0.92759 0.75894 0.88132 0.85314 0.88113 0.74810 0.91653 0.91863 0.92870 0.88283 0.90044 0.94603 0.93684 0.93334 0.94641 0.79643 0.94099 0.91611 0.92283 0.94143 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.93 71.24 0.71 -0.59 16 2 C -0.18 -3.24 6.25 -19.72 -0.12 -3.36 16 3 C -0.01 -0.06 11.40 83.54 0.95 0.89 16 4 N -0.28 -3.05 3.70 -369.45 -1.37 -4.42 16 5 C 0.08 0.03 11.31 127.77 1.44 1.47 16 6 N -0.27 -4.96 11.67 -48.18 -0.56 -5.52 16 7 C -0.05 -1.14 7.13 42.46 0.30 -0.83 16 8 C 0.60 15.83 7.83 86.75 0.68 16.50 16 9 O -0.57 -18.72 15.12 -3.94 -0.06 -18.78 16 10 N -0.71 -15.01 5.55 -466.10 -2.59 -17.60 16 11 C 0.12 2.74 4.92 86.38 0.43 3.17 16 12 C 0.06 1.07 5.39 86.31 0.46 1.54 16 13 N -0.54 -14.04 4.81 -896.38 -4.31 -18.35 16 14 C 0.06 1.79 4.85 86.32 0.42 2.21 16 15 C -0.12 -4.69 5.68 30.65 0.17 -4.51 16 16 C 0.17 7.05 2.84 45.07 0.13 7.18 16 17 N -0.74 -38.77 5.13 -322.56 -1.65 -40.43 16 18 C -0.24 -13.70 9.93 84.03 0.83 -12.87 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 21 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 22 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.11 -3.78 5.57 30.65 0.17 -3.61 16 27 C 0.07 1.81 5.42 86.33 0.47 2.28 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.26 6.72 -2.38 -0.02 1.24 16 31 H 0.22 0.20 8.06 -2.91 -0.02 0.18 16 32 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.13 -0.75 8.13 -2.39 -0.02 -0.77 16 34 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.42 6.92 8.20 -92.71 -0.76 6.16 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.60 6.21 -2.39 -0.01 1.59 16 38 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.32 5.81 -2.39 -0.01 2.30 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 45 H 0.37 21.01 7.80 -92.71 -0.72 20.29 16 46 H 0.25 15.26 8.31 -92.71 -0.77 14.48 16 47 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.10 2.00 8.12 -2.38 -0.02 1.98 16 Total: -1.00 -79.45 402.89 -1.25 -80.69 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.53 Total: 30.25 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 7.51 Total: 5.34 kcal Atomic # 7 Polarization: -136.87 SS G_CDS: -10.20 Total: -147.07 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -79.45 -1.25 -80.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717015479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.903 kcal (2) G-P(sol) polarization free energy of solvation -79.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds