Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57632 * 2 1 4 4 C 1.47526 * 125.77078 * 0.03186 * 3 2 1 5 5 O 1.21593 * 120.00147 * 359.71946 * 4 3 2 6 6 N 1.34774 * 120.00047 * 179.71896 * 4 3 2 7 7 C 1.47025 * 125.64903 * 0.04137 * 6 4 3 8 8 C 1.54324 * 107.27463 * 178.90688 * 7 6 4 9 9 C 1.55163 * 102.93913 * 337.80737 * 8 7 6 10 10 H 1.09004 * 111.03109 * 277.41508 * 9 8 7 11 11 C 1.52999 * 111.00073 * 153.57866 * 9 8 7 12 12 H 1.08996 * 109.46929 * 306.34056 * 11 9 8 13 13 C 1.52997 * 109.47317 * 66.34952 * 11 9 8 14 14 N 1.46506 * 109.46684 * 186.35009 * 11 9 8 15 15 C 1.36929 * 119.99904 * 154.99978 * 14 11 9 16 16 H 1.08004 * 120.00323 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99984 * 179.97438 * 15 14 11 18 18 N 1.31622 * 119.99951 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00021 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47254 * 89.99741 * 19 17 15 21 21 H 1.48501 * 109.47458 * 209.99436 * 19 17 15 22 22 H 1.48498 * 109.47288 * 329.99773 * 19 17 15 23 23 C 1.47422 * 125.64970 * 180.02562 * 6 4 3 24 24 N 1.34398 * 108.45871 * 179.77155 * 3 2 1 25 25 N 1.28762 * 109.52406 * 0.22438 * 24 3 2 26 26 N 1.34812 * 126.58474 * 180.15848 * 2 1 3 27 27 C 1.46501 * 126.59088 * 359.97438 * 26 2 1 28 28 C 1.52994 * 109.47391 * 120.27426 * 27 26 2 29 29 C 1.53008 * 109.46551 * 240.26817 * 27 26 2 30 30 H 1.09004 * 109.46516 * 90.03209 * 1 2 3 31 31 H 1.08998 * 109.46673 * 210.02529 * 1 2 3 32 32 H 1.08997 * 109.47530 * 330.02695 * 1 2 3 33 33 H 1.09003 * 109.88031 * 298.32278 * 7 6 4 34 34 H 1.09005 * 109.88020 * 59.33081 * 7 6 4 35 35 H 1.08999 * 110.71921 * 219.44615 * 8 7 6 36 36 H 1.08999 * 110.72038 * 96.16930 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99641 * 13 11 9 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.47261 * 59.99813 * 13 11 9 40 40 H 0.97000 * 120.00117 * 334.99772 * 14 11 9 41 41 H 0.97000 * 120.00124 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36746 * 85.32594 * 23 6 4 43 43 H 1.08996 * 110.45868 * 323.04820 * 23 6 4 44 44 H 1.08991 * 109.47267 * 0.26509 * 27 26 2 45 45 H 1.08996 * 109.47424 * 179.97438 * 28 27 26 46 46 H 1.09003 * 109.46979 * 299.99361 * 28 27 26 47 47 H 1.08996 * 109.47253 * 59.99066 * 28 27 26 48 48 H 1.08999 * 109.47010 * 60.00157 * 29 27 26 49 49 H 1.09000 * 109.47144 * 179.97438 * 29 27 26 50 50 H 1.08991 * 109.47083 * 299.99804 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 0.0007 5 8 0.6858 2.7628 -0.0039 6 7 2.7815 3.4988 0.0063 7 6 4.2417 3.3274 0.0113 8 6 4.8688 4.7373 -0.0112 9 6 3.7314 5.6140 -0.5988 10 1 3.7173 5.5587 -1.6873 11 6 3.8580 7.0642 -0.1278 12 1 3.9130 7.0893 0.9604 13 6 5.1270 7.6830 -0.7173 14 7 2.6896 7.8266 -0.5752 15 6 2.3019 8.9486 0.1072 16 1 2.8571 9.2713 0.9756 17 6 1.1952 9.6713 -0.3170 18 7 0.8223 10.7495 0.3394 19 14 0.2345 9.1128 -1.8184 20 1 -0.8443 8.1828 -1.3981 21 1 -0.3642 10.2938 -2.4906 22 1 1.1482 8.4175 -2.7603 23 6 2.4749 4.9408 0.0082 24 7 3.5983 0.6790 0.0051 25 7 3.6300 -0.6082 0.0035 26 7 2.3105 -1.0825 -0.0030 27 6 1.8865 -2.4848 -0.0063 28 6 2.4345 -3.1804 -1.2540 29 6 2.4242 -3.1831 1.2444 30 1 -0.3632 -0.0006 -1.0277 31 1 -0.3632 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 4.5498 2.7990 0.9136 34 1 4.5521 2.7668 -0.8705 35 1 5.7458 4.7590 -0.6581 36 1 5.1241 5.0620 0.9975 37 1 5.9962 7.1157 -0.3844 38 1 5.2169 8.7163 -0.3821 39 1 5.0718 7.6579 -1.8056 40 1 2.1908 7.5366 -1.3549 41 1 0.0492 11.2547 0.0427 42 1 2.3106 5.2924 1.0268 43 1 1.5998 5.1450 -0.6087 44 1 0.7978 -2.5352 -0.0108 45 1 2.1194 -4.2238 -1.2563 46 1 2.0515 -2.6829 -2.1451 47 1 3.5233 -3.1299 -1.2495 48 1 2.0338 -2.6875 2.1333 49 1 2.1084 -4.2263 1.2423 50 1 3.5129 -3.1327 1.2489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724551741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = 69.457750 kcal Electronic energy + Delta-G solvation = -29508.236133 eV Core-core repulsion = 25572.920159 eV Total energy + Delta-G solvation = -3935.315974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50525 -39.75540 -37.75391 -36.79905 -35.29339 -33.30430 -32.45759 -31.34672 -30.59395 -28.82471 -28.68498 -27.95911 -27.69905 -24.39983 -24.19563 -23.54408 -22.04617 -21.26801 -20.55518 -19.77900 -19.30856 -17.76622 -17.37341 -16.65250 -16.40592 -15.91791 -15.48133 -14.94508 -14.74697 -14.42483 -14.23620 -13.98467 -13.79947 -13.50637 -13.45964 -13.34926 -13.03555 -12.89183 -12.79162 -12.63765 -12.50840 -12.41304 -12.16464 -12.12908 -12.05283 -11.84871 -11.65431 -11.55772 -11.15726 -10.93408 -10.77024 -10.53648 -10.49719 -10.41983 -10.18908 -9.97380 -9.85380 -9.52255 -9.31831 -8.88005 -8.44318 -7.21902 -5.71402 -3.06616 0.91397 1.62475 1.70339 3.04471 3.28895 3.44024 3.47469 3.51853 3.80014 3.94674 4.17433 4.27085 4.29259 4.47064 4.65335 4.73422 4.77284 4.87720 4.89845 4.96061 5.06748 5.06979 5.09976 5.18189 5.33816 5.38879 5.45302 5.49856 5.55480 5.59725 5.63958 5.69570 5.76234 5.86515 5.93687 5.98809 6.13706 6.17586 6.19546 6.26346 6.34744 6.41225 6.47747 6.59006 6.83795 7.05035 7.59271 7.77397 8.04552 8.21536 8.47641 9.26190 9.99050 10.18588 11.47004 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002598 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.352803 B =10774.207696 C =11738.525180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.122 3.878 3 C -0.099 4.099 4 C 0.613 3.387 5 O -0.538 6.538 6 N -0.603 5.603 7 C 0.111 3.889 8 C -0.125 4.125 9 C -0.107 4.107 10 H 0.080 0.920 11 C 0.190 3.810 12 H 0.059 0.941 13 C -0.164 4.164 14 N -0.749 5.749 15 C -0.239 4.239 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.935 5.935 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.277 1.277 23 C 0.119 3.881 24 N -0.200 5.200 25 N -0.070 5.070 26 N -0.358 5.358 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -31.443 -1.171 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.238 4.238 4 C 0.400 3.600 5 O -0.415 6.415 6 N -0.335 5.335 7 C -0.012 4.012 8 C -0.163 4.163 9 C -0.127 4.127 10 H 0.098 0.902 11 C 0.080 3.920 12 H 0.077 0.923 13 C -0.224 4.224 14 N -0.392 5.392 15 C -0.369 4.369 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.583 5.583 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.219 1.219 22 H -0.203 1.203 23 C -0.002 4.002 24 N -0.073 5.073 25 N -0.049 5.049 26 N -0.145 5.145 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.333 -31.601 -0.991 32.064 hybrid contribution -1.664 -0.187 -1.152 2.033 sum 3.669 -31.788 -2.142 32.071 Atomic orbital electron populations 1.20733 0.84778 1.05364 1.04666 1.21909 0.96227 0.86351 0.97098 1.21163 0.89030 0.95212 1.18397 1.16321 0.84755 0.81908 0.77020 1.90785 1.15457 1.83294 1.52011 1.48299 1.07066 1.06755 1.71419 1.22089 0.79145 0.97556 1.02428 1.22716 0.98075 0.93228 1.02301 1.22726 0.93573 0.96010 1.00362 0.90190 1.20138 0.87562 0.86793 0.97494 0.92349 1.22400 0.97820 1.01504 1.00663 1.42804 1.31731 1.30687 1.33964 1.19043 1.09222 1.00037 1.08614 0.89199 1.24650 0.98474 0.97290 0.98692 1.69701 1.28427 1.18593 1.41576 0.86597 0.80579 0.77722 0.83947 1.20940 1.21895 1.20349 1.22311 0.98674 0.77001 1.02222 1.74711 1.18986 1.03867 1.09773 1.81908 0.96347 1.03465 1.23152 1.50615 1.06340 1.07155 1.50408 1.21640 1.00492 0.75326 0.98313 1.22150 1.03199 1.00859 0.95798 1.22163 1.03270 1.00861 0.95789 0.89051 0.90832 0.86791 0.91089 0.91054 0.90006 0.90249 0.93998 0.92328 0.93658 0.80689 0.93144 0.90411 0.90172 0.87305 0.89904 0.91711 0.90673 0.91699 0.89911 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.40 36.01 0.34 -0.45 16 2 C 0.12 1.33 7.02 -81.87 -0.57 0.76 16 3 C -0.10 -1.37 6.85 -83.55 -0.57 -1.94 16 4 C 0.61 9.90 7.85 -12.48 -0.10 9.80 16 5 O -0.54 -9.81 14.98 5.28 0.08 -9.73 16 6 N -0.60 -9.35 3.33 -171.73 -0.57 -9.92 16 7 C 0.11 1.43 5.52 -3.06 -0.02 1.41 16 8 C -0.12 -1.52 5.59 -24.89 -0.14 -1.66 16 9 C -0.11 -1.64 2.62 -88.46 -0.23 -1.87 16 10 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 11 C 0.19 3.49 2.41 -67.93 -0.16 3.32 16 12 H 0.06 1.11 8.05 -51.93 -0.42 0.70 16 13 C -0.16 -2.76 9.34 37.16 0.35 -2.41 16 14 N -0.75 -17.38 4.62 -53.43 -0.25 -17.62 16 15 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 16 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 18 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 19 Si 0.88 22.56 27.74 -169.99 -4.71 17.84 16 20 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 22 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 23 C 0.12 2.02 6.08 -2.52 -0.02 2.00 16 24 N -0.20 -2.74 9.77 32.85 0.32 -2.41 16 25 N -0.07 -0.85 13.67 60.35 0.82 -0.02 16 26 N -0.36 -3.40 3.28 -50.41 -0.17 -3.57 16 27 C 0.14 0.76 3.68 -67.93 -0.25 0.51 16 28 C -0.16 -0.72 9.47 37.15 0.35 -0.37 16 29 C -0.16 -0.73 9.47 37.16 0.35 -0.37 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.37 7.19 -51.93 -0.37 -0.01 16 32 H 0.11 1.19 6.43 -51.93 -0.33 0.85 16 33 H 0.07 0.89 7.73 -51.93 -0.40 0.49 16 34 H 0.07 0.91 7.61 -51.93 -0.40 0.51 16 35 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 37 H 0.04 0.57 7.50 -51.93 -0.39 0.18 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 42 H 0.08 1.39 8.04 -51.93 -0.42 0.98 16 43 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 44 H 0.11 0.34 6.79 -51.93 -0.35 -0.01 16 45 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -34.65 400.27 -6.98 -41.63 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.39 Total: 4.65 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.93 Total: 1.94 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.94 Total: -62.36 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.65 -6.98 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724551741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.088 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds