Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57632 * 2 1 4 4 C 1.47526 * 125.77078 * 0.03186 * 3 2 1 5 5 O 1.21593 * 120.00147 * 359.71946 * 4 3 2 6 6 N 1.34774 * 120.00047 * 179.71896 * 4 3 2 7 7 C 1.47025 * 125.64903 * 0.04137 * 6 4 3 8 8 C 1.54324 * 107.27463 * 178.90688 * 7 6 4 9 9 C 1.55163 * 102.93913 * 337.80737 * 8 7 6 10 10 H 1.09004 * 111.03109 * 277.41508 * 9 8 7 11 11 C 1.52999 * 111.00073 * 153.57866 * 9 8 7 12 12 H 1.08996 * 109.46929 * 306.34056 * 11 9 8 13 13 C 1.52997 * 109.47317 * 66.34952 * 11 9 8 14 14 N 1.46506 * 109.46684 * 186.35009 * 11 9 8 15 15 C 1.36929 * 119.99904 * 154.99978 * 14 11 9 16 16 H 1.08004 * 120.00323 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99984 * 179.97438 * 15 14 11 18 18 N 1.31622 * 119.99951 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00021 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47254 * 89.99741 * 19 17 15 21 21 H 1.48501 * 109.47458 * 209.99436 * 19 17 15 22 22 H 1.48498 * 109.47288 * 329.99773 * 19 17 15 23 23 C 1.47422 * 125.64970 * 180.02562 * 6 4 3 24 24 N 1.34398 * 108.45871 * 179.77155 * 3 2 1 25 25 N 1.28762 * 109.52406 * 0.22438 * 24 3 2 26 26 N 1.34812 * 126.58474 * 180.15848 * 2 1 3 27 27 C 1.46501 * 126.59088 * 359.97438 * 26 2 1 28 28 C 1.52994 * 109.47391 * 120.27426 * 27 26 2 29 29 C 1.53008 * 109.46551 * 240.26817 * 27 26 2 30 30 H 1.09004 * 109.46516 * 90.03209 * 1 2 3 31 31 H 1.08998 * 109.46673 * 210.02529 * 1 2 3 32 32 H 1.08997 * 109.47530 * 330.02695 * 1 2 3 33 33 H 1.09003 * 109.88031 * 298.32278 * 7 6 4 34 34 H 1.09005 * 109.88020 * 59.33081 * 7 6 4 35 35 H 1.08999 * 110.71921 * 219.44615 * 8 7 6 36 36 H 1.08999 * 110.72038 * 96.16930 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99641 * 13 11 9 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.47261 * 59.99813 * 13 11 9 40 40 H 0.97000 * 120.00117 * 334.99772 * 14 11 9 41 41 H 0.97000 * 120.00124 * 179.97438 * 18 17 15 42 42 H 1.09002 * 110.36746 * 85.32594 * 23 6 4 43 43 H 1.08996 * 110.45868 * 323.04820 * 23 6 4 44 44 H 1.08991 * 109.47267 * 0.26509 * 27 26 2 45 45 H 1.08996 * 109.47424 * 179.97438 * 28 27 26 46 46 H 1.09003 * 109.46979 * 299.99361 * 28 27 26 47 47 H 1.08996 * 109.47253 * 59.99066 * 28 27 26 48 48 H 1.08999 * 109.47010 * 60.00157 * 29 27 26 49 49 H 1.09000 * 109.47144 * 179.97438 * 29 27 26 50 50 H 1.08991 * 109.47083 * 299.99804 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 0.0007 5 8 0.6858 2.7628 -0.0039 6 7 2.7815 3.4988 0.0063 7 6 4.2417 3.3274 0.0113 8 6 4.8688 4.7373 -0.0112 9 6 3.7314 5.6140 -0.5988 10 1 3.7173 5.5587 -1.6873 11 6 3.8580 7.0642 -0.1278 12 1 3.9130 7.0893 0.9604 13 6 5.1270 7.6830 -0.7173 14 7 2.6896 7.8266 -0.5752 15 6 2.3019 8.9486 0.1072 16 1 2.8571 9.2713 0.9756 17 6 1.1952 9.6713 -0.3170 18 7 0.8223 10.7495 0.3394 19 14 0.2345 9.1128 -1.8184 20 1 -0.8443 8.1828 -1.3981 21 1 -0.3642 10.2938 -2.4906 22 1 1.1482 8.4175 -2.7603 23 6 2.4749 4.9408 0.0082 24 7 3.5983 0.6790 0.0051 25 7 3.6300 -0.6082 0.0035 26 7 2.3105 -1.0825 -0.0030 27 6 1.8865 -2.4848 -0.0063 28 6 2.4345 -3.1804 -1.2540 29 6 2.4242 -3.1831 1.2444 30 1 -0.3632 -0.0006 -1.0277 31 1 -0.3632 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 4.5498 2.7990 0.9136 34 1 4.5521 2.7668 -0.8705 35 1 5.7458 4.7590 -0.6581 36 1 5.1241 5.0620 0.9975 37 1 5.9962 7.1157 -0.3844 38 1 5.2169 8.7163 -0.3821 39 1 5.0718 7.6579 -1.8056 40 1 2.1908 7.5366 -1.3549 41 1 0.0492 11.2547 0.0427 42 1 2.3106 5.2924 1.0268 43 1 1.5998 5.1450 -0.6087 44 1 0.7978 -2.5352 -0.0108 45 1 2.1194 -4.2238 -1.2563 46 1 2.0515 -2.6829 -2.1451 47 1 3.5233 -3.1299 -1.2495 48 1 2.0338 -2.6875 2.1333 49 1 2.1084 -4.2263 1.2423 50 1 3.5129 -3.1327 1.2489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724551741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = 45.906506 kcal Electronic energy + Delta-G solvation = -29509.257392 eV Core-core repulsion = 25572.920159 eV Total energy + Delta-G solvation = -3936.337233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.37965 -40.97283 -39.07031 -37.40158 -36.89730 -34.34657 -34.01960 -32.60602 -31.83599 -30.33691 -29.84095 -28.64675 -28.28733 -25.75566 -25.32810 -24.82827 -23.04567 -22.72340 -21.33726 -21.24651 -20.36691 -19.54229 -18.45549 -17.60394 -17.30200 -17.15795 -16.67763 -16.47457 -15.80342 -15.52449 -15.28536 -15.26195 -14.96464 -14.55396 -14.36132 -14.17868 -14.11758 -14.02507 -13.90319 -13.86800 -13.61445 -13.25474 -13.20830 -13.18829 -13.08872 -12.90110 -12.67908 -12.54555 -12.41127 -12.33910 -12.09887 -11.95334 -11.87217 -11.71623 -11.66734 -11.38749 -11.18891 -11.12851 -10.96477 -10.27523 -9.66245 -9.27824 -7.99123 -5.30499 0.07465 0.58500 1.01154 1.37635 1.41474 1.46650 1.89091 2.14182 2.50149 3.06584 3.23507 3.33149 3.40022 3.51850 3.66528 3.68033 3.79841 3.82149 3.96041 4.00267 4.09647 4.34413 4.41201 4.47396 4.53557 4.55326 4.60439 4.62597 4.62719 4.67421 4.74251 4.74359 4.83019 4.86397 4.94043 5.00212 5.08566 5.09433 5.10770 5.17223 5.21640 5.23869 5.33569 5.41259 5.54127 5.63572 5.82383 6.25556 6.40861 6.80273 7.04583 7.12009 7.89445 8.06718 9.22702 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.002598 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.352803 B =10774.207696 C =11738.525180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.128 4.128 4 C 0.607 3.393 5 O -0.570 6.570 6 N -0.606 5.606 7 C 0.115 3.885 8 C -0.112 4.112 9 C -0.095 4.095 10 H 0.087 0.913 11 C 0.184 3.816 12 H 0.048 0.952 13 C -0.155 4.155 14 N -0.753 5.753 15 C -0.216 4.216 16 H 0.060 0.940 17 C -0.065 4.065 18 N -0.985 5.985 19 Si 0.946 3.054 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.252 1.252 23 C 0.121 3.879 24 N -0.214 5.214 25 N -0.082 5.082 26 N -0.344 5.344 27 C 0.131 3.869 28 C -0.158 4.158 29 C -0.159 4.159 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.362 0.638 41 H 0.255 0.745 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.140 0.860 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -35.206 -2.458 35.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.267 4.267 4 C 0.395 3.605 5 O -0.449 6.449 6 N -0.338 5.338 7 C -0.007 4.007 8 C -0.151 4.151 9 C -0.115 4.115 10 H 0.105 0.895 11 C 0.076 3.924 12 H 0.066 0.934 13 C -0.214 4.214 14 N -0.396 5.396 15 C -0.347 4.347 16 H 0.078 0.922 17 C -0.256 4.256 18 N -0.637 5.637 19 Si 0.774 3.226 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.177 1.177 23 C -0.001 4.001 24 N -0.087 5.087 25 N -0.062 5.062 26 N -0.131 5.131 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.217 4.217 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.195 0.805 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.157 0.843 45 H 0.131 0.869 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.186 -35.443 -2.289 36.052 hybrid contribution -1.860 0.829 -0.647 2.136 sum 4.326 -34.615 -2.936 35.007 Atomic orbital electron populations 1.20812 0.82804 1.06044 1.05606 1.22258 0.97313 0.85948 0.95357 1.21008 0.89975 0.94640 1.21085 1.16711 0.84465 0.82955 0.76333 1.90755 1.16681 1.84010 1.53467 1.48378 1.08259 1.05932 1.71218 1.22175 0.77481 0.98105 1.02933 1.22741 0.97633 0.91509 1.03178 1.22555 0.94228 0.94054 1.00663 0.89461 1.20374 0.86646 0.88227 0.97132 0.93357 1.22256 0.98069 1.00281 1.00805 1.42854 1.33315 1.29775 1.33646 1.19011 1.07909 1.00572 1.07253 0.92176 1.25397 1.00176 0.97855 1.02185 1.69869 1.29415 1.20496 1.43876 0.85533 0.79214 0.77012 0.80800 1.21245 1.22388 1.17681 1.22129 0.98742 0.78508 1.00760 1.74662 1.19104 1.04565 1.10405 1.81813 0.97994 1.02961 1.23396 1.50947 1.05160 1.08391 1.48629 1.22207 1.02380 0.73059 0.99162 1.22155 1.02105 1.02453 0.94905 1.22169 1.02176 1.02463 0.94904 0.87823 0.87005 0.89187 0.90687 0.90432 0.87010 0.89497 0.90073 0.94936 0.93127 0.80511 0.93575 0.92227 0.92647 0.84266 0.86901 0.92411 0.92270 0.92415 0.86895 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.40 71.24 0.67 -0.69 16 2 C 0.13 2.68 7.02 41.72 0.29 2.97 16 3 C -0.13 -3.49 6.85 40.82 0.28 -3.21 16 4 C 0.61 19.84 7.85 86.69 0.68 20.52 16 5 O -0.57 -21.36 14.98 -4.01 -0.06 -21.42 16 6 N -0.61 -18.73 3.33 -815.49 -2.71 -21.44 16 7 C 0.12 2.79 5.52 86.73 0.48 3.26 16 8 C -0.11 -2.43 5.59 31.79 0.18 -2.25 16 9 C -0.10 -2.77 2.62 -9.39 -0.02 -2.80 16 10 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 11 C 0.18 6.60 2.41 44.99 0.11 6.71 16 12 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 13 C -0.15 -4.88 9.34 71.98 0.67 -4.20 16 14 N -0.75 -34.86 4.62 -322.94 -1.49 -36.35 16 15 C -0.22 -12.34 10.41 84.04 0.87 -11.47 16 16 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 17 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 18 N -0.99 -64.45 13.97 21.65 0.30 -64.15 16 19 Si 0.95 47.37 27.74 68.60 1.90 49.27 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 22 H -0.25 -11.42 6.52 99.48 0.65 -10.77 16 23 C 0.12 4.13 6.08 86.86 0.53 4.66 16 24 N -0.21 -5.70 9.77 -49.99 -0.49 -6.19 16 25 N -0.08 -1.92 13.67 37.02 0.51 -1.41 16 26 N -0.34 -5.89 3.28 -313.39 -1.03 -6.92 16 27 C 0.13 0.99 3.68 44.99 0.17 1.15 16 28 C -0.16 -0.96 9.47 71.98 0.68 -0.28 16 29 C -0.16 -0.98 9.47 71.98 0.68 -0.29 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.11 0.71 7.19 -2.39 -0.02 0.69 16 32 H 0.09 1.84 6.43 -2.39 -0.02 1.82 16 33 H 0.07 1.79 7.73 -2.39 -0.02 1.77 16 34 H 0.08 1.82 7.61 -2.38 -0.02 1.80 16 35 H 0.11 1.83 8.13 -2.39 -0.02 1.81 16 36 H 0.09 1.80 8.01 -2.39 -0.02 1.78 16 37 H 0.08 1.93 7.50 -2.39 -0.02 1.91 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.36 16.53 5.66 -92.71 -0.52 16.01 16 41 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 43 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 44 H 0.14 0.25 6.79 -2.39 -0.02 0.23 16 45 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -79.37 400.27 4.01 -75.36 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.35 Total: 22.62 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.73 Total: 10.63 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -4.91 Total: -136.46 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Total: -79.37 4.01 -75.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724551741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.270 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds