Wall clock time and date at job start Tue Mar 31 2020 20:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47236 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 3 7 7 C 1.53002 * 109.46817 * 184.99998 * 5 4 3 8 8 N 1.46503 * 109.46849 * 184.99887 * 7 5 4 9 9 C 1.36938 * 119.99947 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99894 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99461 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00480 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47484 * 89.99940 * 13 11 9 15 15 H 1.48499 * 109.47074 * 210.00316 * 13 11 9 16 16 H 1.48502 * 109.47018 * 329.99610 * 13 11 9 17 17 N 1.46505 * 109.47212 * 64.99775 * 5 4 3 18 18 C 1.34769 * 119.99798 * 274.99913 * 17 5 4 19 19 O 1.21280 * 120.00742 * 0.02562 * 18 17 5 20 20 C 1.50705 * 119.99510 * 179.97438 * 18 17 5 21 21 H 1.09003 * 109.68752 * 59.46134 * 20 18 17 22 22 C 1.53438 * 109.69029 * 179.97438 * 20 18 17 23 23 C 1.53112 * 109.55213 * 169.43372 * 22 20 18 24 24 C 1.53411 * 109.58519 * 289.95090 * 23 22 20 25 25 C 1.50595 * 108.33725 * 49.82204 * 24 23 22 26 26 N 1.32909 * 129.17005 * 163.47111 * 25 24 23 27 27 N 1.29014 * 108.64315 * 180.11205 * 26 25 24 28 28 N 1.29113 * 110.25774 * 359.97341 * 27 26 25 29 29 H 0.96994 * 126.01150 * 179.97438 * 28 27 26 30 30 C 1.34401 * 107.98254 * 359.93426 * 28 27 26 31 31 H 1.08993 * 109.47422 * 300.00302 * 1 2 3 32 32 H 1.09004 * 109.46754 * 60.00646 * 1 2 3 33 33 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47422 * 239.99698 * 2 1 3 35 35 H 1.09004 * 109.46754 * 119.99354 * 2 1 3 36 36 H 1.09001 * 109.47630 * 59.99665 * 3 2 1 37 37 H 1.09004 * 109.47346 * 299.99535 * 3 2 1 38 38 H 1.09001 * 109.46917 * 59.99433 * 4 3 2 39 39 H 1.09004 * 109.46741 * 300.00111 * 4 3 2 40 40 H 1.08997 * 109.47047 * 304.99674 * 7 5 4 41 41 H 1.08997 * 109.47298 * 65.00333 * 7 5 4 42 42 H 0.97000 * 120.00112 * 0.02562 * 8 7 5 43 43 H 0.97002 * 119.99794 * 179.97438 * 12 11 9 44 44 H 0.97005 * 119.99239 * 94.99888 * 17 5 4 45 45 H 1.09000 * 109.46344 * 289.46265 * 22 20 18 46 46 H 1.08998 * 109.45482 * 49.43428 * 22 20 18 47 47 H 1.09000 * 109.45036 * 49.98511 * 23 22 20 48 48 H 1.09000 * 109.44764 * 169.91260 * 23 22 20 49 49 H 1.09001 * 109.69331 * 169.53573 * 24 23 22 50 50 H 1.09001 * 109.68991 * 290.07380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 5.6048 2.8869 -0.1238 8 7 6.1030 4.2594 -0.0034 9 6 7.4468 4.5096 -0.0850 10 1 8.1394 3.6952 -0.2376 11 6 7.9188 5.8101 0.0296 12 7 9.2105 6.0505 -0.0483 13 14 6.7210 7.2184 0.2958 14 1 6.5186 7.4278 1.7519 15 1 7.2710 8.4573 -0.3108 16 1 5.4210 6.8899 -0.3425 17 7 3.6918 3.5397 1.2531 18 6 2.4745 4.1065 1.3678 19 8 1.7001 4.0743 0.4350 20 6 2.0750 4.7794 2.6558 21 1 2.7699 5.5894 2.8778 22 6 0.6526 5.3400 2.5267 23 6 0.1505 5.7855 3.9028 24 6 -0.0991 4.5538 4.7826 25 6 1.1214 3.6736 4.7228 26 7 1.4804 2.6803 5.5296 27 7 2.6018 2.1964 5.1142 28 7 3.0000 2.8304 4.0623 29 1 3.8137 2.6547 3.5644 30 6 2.0883 3.7760 3.7778 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9337 0.9285 -0.8891 39 1 3.9329 0.9289 0.8909 40 1 6.0351 2.2735 0.6679 41 1 5.8903 2.4806 -1.0941 42 1 5.4809 4.9908 0.1340 43 1 9.5403 6.9592 0.0314 44 1 4.3111 3.5651 1.9994 45 1 0.6587 6.1935 1.8487 46 1 -0.0076 4.5676 2.1323 47 1 0.8994 6.4223 4.3738 48 1 -0.7787 6.3433 3.7870 49 1 -0.2759 4.8671 5.8116 50 1 -0.9657 4.0068 4.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725231363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:36 Heat of formation + Delta-G solvation = 44.265588 kcal Electronic energy + Delta-G solvation = -30837.628779 eV Core-core repulsion = 26901.220390 eV Total energy + Delta-G solvation = -3936.408388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.74735 -40.34113 -37.60958 -36.45666 -35.17819 -34.34664 -33.65456 -31.77030 -30.98914 -30.35843 -30.33757 -27.71627 -25.09986 -24.27589 -23.44228 -22.93701 -22.11786 -21.33274 -20.89699 -20.65803 -19.81702 -18.51658 -17.84015 -17.27253 -16.56436 -16.30942 -15.77769 -15.23116 -14.95170 -14.67394 -14.34469 -14.28813 -14.06249 -13.96962 -13.95873 -13.51148 -13.11528 -12.92769 -12.85108 -12.46341 -12.41329 -12.22297 -11.84819 -11.65306 -11.62346 -11.51794 -11.47649 -11.33338 -11.14011 -11.03026 -11.00603 -10.90569 -10.58945 -10.51512 -10.46699 -10.28441 -9.99207 -9.74758 -9.12720 -9.11446 -9.03268 -7.42331 -5.91264 -3.28835 1.25779 2.23434 2.32285 2.53033 3.00081 3.22584 3.26765 3.33639 3.95681 4.10640 4.33945 4.44325 4.45636 4.58297 4.60045 4.89621 4.90685 4.96249 5.00611 5.02045 5.11265 5.17014 5.22161 5.29255 5.29504 5.38165 5.55409 5.57342 5.61691 5.64274 5.72252 5.73483 5.74959 5.76083 5.85078 5.93048 5.96398 5.97712 6.02347 6.09131 6.14739 6.27605 6.37389 6.44037 6.52524 6.58409 7.30714 7.82758 8.01826 8.21158 8.26942 9.04591 9.76443 9.94914 11.26706 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.004503 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.033934 B = 6216.824138 C = 7700.483909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.128 4.128 5 C 0.133 3.867 6 H 0.093 0.907 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.251 4.251 10 H 0.091 0.909 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.289 1.289 16 H -0.277 1.277 17 N -0.720 5.720 18 C 0.516 3.484 19 O -0.517 6.517 20 C -0.037 4.037 21 H 0.120 0.880 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.035 4.035 25 C -0.006 4.006 26 N -0.258 5.258 27 N -0.079 5.079 28 N -0.378 5.378 29 H 0.446 0.554 30 C -0.008 4.008 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.362 0.638 43 H 0.261 0.739 44 H 0.393 0.607 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.760 -5.455 6.106 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.167 4.167 5 C 0.029 3.971 6 H 0.111 0.889 7 C 0.020 3.980 8 N -0.401 5.401 9 C -0.381 4.381 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.576 5.576 13 Si 0.711 3.289 14 H -0.211 1.211 15 H -0.215 1.215 16 H -0.203 1.203 17 N -0.372 5.372 18 C 0.301 3.699 19 O -0.392 6.392 20 C -0.061 4.061 21 H 0.138 0.862 22 C -0.134 4.134 23 C -0.159 4.159 24 C -0.074 4.074 25 C -0.146 4.146 26 N -0.124 5.124 27 N -0.058 5.058 28 N -0.098 5.098 29 H 0.293 0.707 30 C -0.144 4.144 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.228 0.772 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.833 -6.670 6.479 21.905 hybrid contribution 0.286 1.769 -0.543 1.872 sum -19.547 -4.901 5.936 21.008 Atomic orbital electron populations 1.21732 0.96113 1.01033 1.01771 1.21561 0.95780 0.97475 1.01468 1.21669 0.94572 0.95677 1.03027 1.21990 0.96231 0.95825 1.02623 1.21473 0.96328 0.92881 0.86421 0.88923 1.20965 0.88716 0.88415 0.99894 1.42693 1.05392 1.02431 1.89576 1.19033 0.81873 0.94324 1.42838 0.89075 1.24670 0.95499 0.96908 1.01647 1.69693 1.11428 1.20113 1.56412 0.86614 0.81007 0.83387 0.77930 1.21056 1.21476 1.20340 1.46219 1.15916 1.57709 1.17385 1.20257 0.81973 0.78489 0.89203 1.90724 1.50840 1.57696 1.39927 1.20124 1.02108 0.95322 0.88542 0.86243 1.21463 0.92187 1.02112 0.97663 1.21689 1.02402 0.97030 0.94749 1.20014 0.92351 0.93478 1.01530 1.21696 0.99294 0.99229 0.94360 1.74845 1.05207 1.09097 1.23266 1.78606 1.09123 1.18514 0.99560 1.44865 1.19939 1.23325 1.21662 0.70703 1.21437 0.93567 0.97485 1.01917 0.93094 0.92740 0.93159 0.92225 0.92660 0.92142 0.91367 0.90537 0.91984 0.94952 0.93733 0.80495 0.92886 0.77233 0.89656 0.89892 0.91111 0.89928 0.89522 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.11 -1.33 3.82 -26.73 -0.10 -1.44 16 4 C -0.13 -1.47 4.89 -26.73 -0.13 -1.60 16 5 C 0.13 1.81 2.42 -67.93 -0.16 1.65 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 7 C 0.15 2.46 5.82 -4.04 -0.02 2.43 16 8 N -0.75 -16.17 5.24 -59.91 -0.31 -16.49 16 9 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 10 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 11 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 13 Si 0.88 21.01 27.74 -169.99 -4.71 16.29 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 17 N -0.72 -8.93 4.03 -53.80 -0.22 -9.15 16 18 C 0.52 6.49 5.70 -10.99 -0.06 6.43 16 19 O -0.52 -7.69 12.96 5.56 0.07 -7.62 16 20 C -0.04 -0.38 2.90 -92.78 -0.27 -0.65 16 21 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.10 -0.85 4.67 -26.45 -0.12 -0.97 16 23 C -0.12 -0.83 5.90 -26.46 -0.16 -0.99 16 24 C -0.03 -0.28 6.30 -27.72 -0.17 -0.46 16 25 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 26 N -0.26 -3.56 12.40 33.16 0.41 -3.15 16 27 N -0.08 -1.07 13.40 60.35 0.81 -0.26 16 28 N -0.38 -4.22 6.77 33.39 0.23 -3.99 16 29 H 0.45 4.16 6.90 -190.08 -1.31 2.84 16 30 C -0.01 -0.09 6.38 -82.50 -0.53 -0.62 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 37 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.36 7.70 5.19 -40.82 -0.21 7.49 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.39 4.47 6.77 -40.82 -0.28 4.19 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.82 7.73 -51.93 -0.40 0.41 16 47 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -32.59 391.10 -8.65 -41.24 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -9.23 Total: 10.73 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.37 Total: -6.15 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 1.69 Total: -60.39 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.07 Total: -7.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.59 -8.65 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.507 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds