Wall clock time and date at job start Tue Mar 31 2020 20:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.53004 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47236 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47153 * 304.99767 * 5 4 3 7 7 C 1.53002 * 109.46817 * 184.99998 * 5 4 3 8 8 N 1.46503 * 109.46849 * 184.99887 * 7 5 4 9 9 C 1.36938 * 119.99947 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99894 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99592 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99461 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00480 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47484 * 89.99940 * 13 11 9 15 15 H 1.48499 * 109.47074 * 210.00316 * 13 11 9 16 16 H 1.48502 * 109.47018 * 329.99610 * 13 11 9 17 17 N 1.46505 * 109.47212 * 64.99775 * 5 4 3 18 18 C 1.34769 * 119.99798 * 274.99913 * 17 5 4 19 19 O 1.21280 * 120.00742 * 0.02562 * 18 17 5 20 20 C 1.50705 * 119.99510 * 179.97438 * 18 17 5 21 21 H 1.09003 * 109.68752 * 59.46134 * 20 18 17 22 22 C 1.53438 * 109.69029 * 179.97438 * 20 18 17 23 23 C 1.53112 * 109.55213 * 169.43372 * 22 20 18 24 24 C 1.53411 * 109.58519 * 289.95090 * 23 22 20 25 25 C 1.50595 * 108.33725 * 49.82204 * 24 23 22 26 26 N 1.32909 * 129.17005 * 163.47111 * 25 24 23 27 27 N 1.29014 * 108.64315 * 180.11205 * 26 25 24 28 28 N 1.29113 * 110.25774 * 359.97341 * 27 26 25 29 29 H 0.96994 * 126.01150 * 179.97438 * 28 27 26 30 30 C 1.34401 * 107.98254 * 359.93426 * 28 27 26 31 31 H 1.08993 * 109.47422 * 300.00302 * 1 2 3 32 32 H 1.09004 * 109.46754 * 60.00646 * 1 2 3 33 33 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47422 * 239.99698 * 2 1 3 35 35 H 1.09004 * 109.46754 * 119.99354 * 2 1 3 36 36 H 1.09001 * 109.47630 * 59.99665 * 3 2 1 37 37 H 1.09004 * 109.47346 * 299.99535 * 3 2 1 38 38 H 1.09001 * 109.46917 * 59.99433 * 4 3 2 39 39 H 1.09004 * 109.46741 * 300.00111 * 4 3 2 40 40 H 1.08997 * 109.47047 * 304.99674 * 7 5 4 41 41 H 1.08997 * 109.47298 * 65.00333 * 7 5 4 42 42 H 0.97000 * 120.00112 * 0.02562 * 8 7 5 43 43 H 0.97002 * 119.99794 * 179.97438 * 12 11 9 44 44 H 0.97005 * 119.99239 * 94.99888 * 17 5 4 45 45 H 1.09000 * 109.46344 * 289.46265 * 22 20 18 46 46 H 1.08998 * 109.45482 * 49.43428 * 22 20 18 47 47 H 1.09000 * 109.45036 * 49.98511 * 23 22 20 48 48 H 1.09000 * 109.44764 * 169.91260 * 23 22 20 49 49 H 1.09001 * 109.69331 * 169.53573 * 24 23 22 50 50 H 1.09001 * 109.68991 * 290.07380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 5.6048 2.8869 -0.1238 8 7 6.1030 4.2594 -0.0034 9 6 7.4468 4.5096 -0.0850 10 1 8.1394 3.6952 -0.2376 11 6 7.9188 5.8101 0.0296 12 7 9.2105 6.0505 -0.0483 13 14 6.7210 7.2184 0.2958 14 1 6.5186 7.4278 1.7519 15 1 7.2710 8.4573 -0.3108 16 1 5.4210 6.8899 -0.3425 17 7 3.6918 3.5397 1.2531 18 6 2.4745 4.1065 1.3678 19 8 1.7001 4.0743 0.4350 20 6 2.0750 4.7794 2.6558 21 1 2.7699 5.5894 2.8778 22 6 0.6526 5.3400 2.5267 23 6 0.1505 5.7855 3.9028 24 6 -0.0991 4.5538 4.7826 25 6 1.1214 3.6736 4.7228 26 7 1.4804 2.6803 5.5296 27 7 2.6018 2.1964 5.1142 28 7 3.0000 2.8304 4.0623 29 1 3.8137 2.6547 3.5644 30 6 2.0883 3.7760 3.7778 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9337 0.9285 -0.8891 39 1 3.9329 0.9289 0.8909 40 1 6.0351 2.2735 0.6679 41 1 5.8903 2.4806 -1.0941 42 1 5.4809 4.9908 0.1340 43 1 9.5403 6.9592 0.0314 44 1 4.3111 3.5651 1.9994 45 1 0.6587 6.1935 1.8487 46 1 -0.0076 4.5676 2.1323 47 1 0.8994 6.4223 4.3738 48 1 -0.7787 6.3433 3.7870 49 1 -0.2759 4.8671 5.8116 50 1 -0.9657 4.0068 4.4113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725231363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:35 Heat of formation + Delta-G solvation = 22.260256 kcal Electronic energy + Delta-G solvation = -30838.583002 eV Core-core repulsion = 26901.220390 eV Total energy + Delta-G solvation = -3937.362611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.64152 -41.36387 -38.57669 -37.43730 -36.39832 -35.47354 -34.88077 -33.35542 -32.24478 -31.19008 -31.16758 -29.04192 -26.09150 -25.54228 -24.36792 -23.70753 -23.60522 -22.40933 -21.87341 -21.74345 -20.57010 -19.85653 -19.27541 -18.24891 -17.59109 -17.31821 -16.84036 -16.53831 -16.15971 -15.77813 -15.60920 -15.21947 -14.99893 -14.83956 -14.75963 -14.68247 -14.60062 -14.24132 -13.90384 -13.76947 -13.35573 -13.18521 -13.02896 -12.92554 -12.71143 -12.63240 -12.47115 -12.26508 -12.19002 -12.05522 -12.02388 -11.91016 -11.86694 -11.67636 -11.53568 -11.44038 -11.38747 -11.06584 -10.94036 -10.15748 -9.97706 -9.35102 -8.05173 -5.39513 0.36684 1.30918 1.33062 1.37643 1.42664 1.44899 1.62718 2.02735 2.44704 3.15399 3.26509 3.27596 3.38092 3.55157 3.70205 3.82865 3.89365 3.99063 4.06158 4.15239 4.22605 4.25555 4.26815 4.30814 4.43197 4.44745 4.53397 4.57313 4.74569 4.84873 4.86105 4.91548 4.96473 4.97987 4.99470 5.06520 5.09960 5.13522 5.16735 5.25344 5.29529 5.31062 5.41987 5.46343 5.50944 5.69782 5.73899 6.17745 6.30891 7.02515 7.04646 7.29144 7.78751 7.97321 9.16061 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.004503 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.033934 B = 6216.824138 C = 7700.483909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.121 4.121 5 C 0.147 3.853 6 H 0.076 0.924 7 C 0.146 3.854 8 N -0.755 5.755 9 C -0.234 4.234 10 H 0.060 0.940 11 C -0.059 4.059 12 N -0.981 5.981 13 Si 0.949 3.051 14 H -0.269 1.269 15 H -0.300 1.300 16 H -0.259 1.259 17 N -0.719 5.719 18 C 0.516 3.484 19 O -0.540 6.540 20 C -0.032 4.032 21 H 0.135 0.865 22 C -0.094 4.094 23 C -0.112 4.112 24 C -0.036 4.036 25 C -0.010 4.010 26 N -0.286 5.286 27 N -0.104 5.104 28 N -0.370 5.370 29 H 0.452 0.548 30 C -0.006 4.006 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.365 0.635 43 H 0.258 0.742 44 H 0.399 0.601 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 -5.069 6.657 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.160 4.160 5 C 0.042 3.958 6 H 0.094 0.906 7 C 0.020 3.980 8 N -0.401 5.401 9 C -0.365 4.365 10 H 0.078 0.922 11 C -0.251 4.251 12 N -0.632 5.632 13 Si 0.776 3.224 14 H -0.195 1.195 15 H -0.227 1.227 16 H -0.184 1.184 17 N -0.372 5.372 18 C 0.301 3.699 19 O -0.417 6.417 20 C -0.056 4.056 21 H 0.153 0.847 22 C -0.133 4.133 23 C -0.150 4.150 24 C -0.075 4.075 25 C -0.151 4.151 26 N -0.151 5.151 27 N -0.083 5.083 28 N -0.091 5.091 29 H 0.300 0.700 30 C -0.143 4.143 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.235 0.765 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.125 0.875 49 H 0.116 0.884 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.141 -6.336 7.052 24.085 hybrid contribution 1.008 1.532 -0.775 1.991 sum -21.132 -4.804 6.277 22.562 Atomic orbital electron populations 1.21719 0.95808 1.01741 1.01259 1.21545 0.96068 0.96456 1.01991 1.21538 0.94592 0.96330 1.01570 1.21943 0.95970 0.94390 1.03686 1.21207 0.93842 0.94194 0.86561 0.90607 1.21117 0.90822 0.85994 1.00074 1.42646 1.03490 1.04580 1.89380 1.19014 0.83655 0.93363 1.40424 0.92151 1.25451 0.97131 0.99846 1.02648 1.69877 1.13833 1.20440 1.59016 0.85506 0.79154 0.79145 0.78552 1.19467 1.22707 1.18430 1.46198 1.16246 1.57672 1.17075 1.20646 0.81481 0.77993 0.89743 1.90720 1.51425 1.58503 1.41007 1.20215 1.03492 0.95156 0.86724 0.84709 1.21491 0.90933 1.01825 0.99020 1.21676 1.03682 0.96535 0.93071 1.20196 0.91173 0.93501 1.02619 1.22285 1.00218 0.98825 0.93770 1.74818 1.05641 1.10242 1.24376 1.78560 1.09649 1.19465 1.00603 1.44869 1.20103 1.23017 1.21139 0.69971 1.21599 0.93335 0.97389 1.01960 0.93964 0.92889 0.91860 0.91303 0.92458 0.93459 0.92931 0.89576 0.90815 0.93700 0.93922 0.80115 0.93351 0.76516 0.89141 0.91078 0.90536 0.87540 0.88425 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.39 5.93 30.59 0.18 -2.20 16 3 C -0.10 -2.31 3.82 30.59 0.12 -2.20 16 4 C -0.12 -2.57 4.89 30.59 0.15 -2.42 16 5 C 0.15 3.77 2.42 44.99 0.11 3.88 16 6 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 7 C 0.15 4.66 5.82 86.38 0.50 5.17 16 8 N -0.75 -31.39 5.24 -343.45 -1.80 -33.19 16 9 C -0.23 -12.40 10.47 84.03 0.88 -11.52 16 10 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 11 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 12 N -0.98 -60.63 13.97 21.65 0.30 -60.32 16 13 Si 0.95 42.93 27.74 68.60 1.90 44.83 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.26 -10.80 6.52 99.48 0.65 -10.15 16 17 N -0.72 -16.58 4.03 -442.53 -1.78 -18.36 16 18 C 0.52 12.07 5.70 87.66 0.50 12.57 16 19 O -0.54 -15.37 12.96 -3.03 -0.04 -15.41 16 20 C -0.03 -0.59 2.90 -12.19 -0.04 -0.63 16 21 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 22 C -0.09 -1.43 4.67 30.78 0.14 -1.29 16 23 C -0.11 -1.19 5.90 30.77 0.18 -1.01 16 24 C -0.04 -0.50 6.30 29.95 0.19 -0.31 16 25 C -0.01 -0.22 7.11 41.75 0.30 0.08 16 26 N -0.29 -7.64 12.40 -48.99 -0.61 -8.25 16 27 N -0.10 -2.75 13.40 37.02 0.50 -2.25 16 28 N -0.37 -7.82 6.77 -48.27 -0.33 -8.14 16 29 H 0.45 7.83 6.90 -219.68 -1.52 6.32 16 30 C -0.01 -0.13 6.38 41.50 0.26 0.14 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.05 1.19 5.64 -2.39 -0.01 1.18 16 37 H 0.05 1.35 7.85 -2.39 -0.02 1.34 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.37 14.76 5.19 -92.71 -0.48 14.28 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.40 8.29 6.77 -92.70 -0.63 7.66 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.27 7.73 -2.39 -0.02 1.25 16 47 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 48 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.95 391.10 1.09 -69.86 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -1.72 Total: 35.88 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.66 Total: -4.65 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -3.72 Total: -130.52 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.04 Total: -15.41 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.90 Total: 44.83 kcal Total: -70.95 1.09 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.118 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds