Wall clock time and date at job start Tue Mar 31 2020 20:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47504 * 2 1 4 4 C 1.52993 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47280 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47234 * 305.00610 * 5 4 3 7 7 C 1.52995 * 109.47459 * 185.00263 * 5 4 3 8 8 N 1.46494 * 109.47175 * 185.00658 * 7 5 4 9 9 C 1.36938 * 120.00086 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00167 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99988 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00291 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99731 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47427 * 89.99901 * 13 11 9 15 15 H 1.48501 * 109.46611 * 210.00010 * 13 11 9 16 16 H 1.48496 * 109.47229 * 329.99534 * 13 11 9 17 17 N 1.46500 * 109.46764 * 65.00161 * 5 4 3 18 18 C 1.34780 * 120.00150 * 275.00452 * 17 5 4 19 19 O 1.21285 * 119.99935 * 359.97438 * 18 17 5 20 20 C 1.50701 * 120.00030 * 180.02562 * 18 17 5 21 21 H 1.09004 * 109.68846 * 299.44628 * 20 18 17 22 22 C 1.53446 * 109.70460 * 178.86712 * 20 18 17 23 23 C 1.53100 * 109.54946 * 190.54025 * 22 20 18 24 24 C 1.53426 * 109.58198 * 70.05590 * 23 22 20 25 25 C 1.50593 * 108.33449 * 310.18008 * 24 23 22 26 26 N 1.32909 * 129.16005 * 196.56193 * 25 24 23 27 27 N 1.29023 * 108.63553 * 179.88513 * 26 25 24 28 28 N 1.29109 * 110.25407 * 0.02562 * 27 26 25 29 29 H 0.97001 * 125.99839 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.99011 * 0.05755 * 28 27 26 31 31 H 1.09006 * 109.46626 * 299.99728 * 1 2 3 32 32 H 1.08994 * 109.47301 * 59.99436 * 1 2 3 33 33 H 1.08996 * 109.47260 * 180.02562 * 1 2 3 34 34 H 1.09007 * 109.47027 * 239.99912 * 2 1 3 35 35 H 1.09007 * 109.47243 * 120.00247 * 2 1 3 36 36 H 1.09005 * 109.46448 * 60.00373 * 3 2 1 37 37 H 1.08994 * 109.47302 * 300.00563 * 3 2 1 38 38 H 1.09005 * 109.47505 * 60.00435 * 4 3 2 39 39 H 1.09007 * 109.47415 * 300.00160 * 4 3 2 40 40 H 1.09002 * 109.47074 * 305.00065 * 7 5 4 41 41 H 1.08994 * 109.47212 * 64.99789 * 7 5 4 42 42 H 0.97004 * 119.99942 * 359.97438 * 8 7 5 43 43 H 0.96999 * 120.00458 * 180.02562 * 12 11 9 44 44 H 0.97004 * 120.00480 * 95.00359 * 17 5 4 45 45 H 1.08998 * 109.45418 * 70.51922 * 22 20 18 46 46 H 1.09007 * 109.46631 * 310.56717 * 22 20 18 47 47 H 1.09004 * 109.45290 * 310.02806 * 23 22 20 48 48 H 1.08994 * 109.45681 * 190.09723 * 23 22 20 49 49 H 1.09003 * 109.68795 * 69.89305 * 24 23 22 50 50 H 1.09003 * 109.69247 * 190.42443 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4235 -0.8422 7 6 5.6050 2.8866 -0.1251 8 7 6.1032 4.2590 -0.0058 9 6 7.4470 4.5092 -0.0876 10 1 8.1397 3.6946 -0.2397 11 6 7.9191 5.8097 0.0249 12 7 7.0750 6.8025 0.2097 13 14 9.7522 6.1510 -0.0874 14 1 10.1231 6.4030 -1.5030 15 1 10.0845 7.3444 0.7315 16 1 10.5063 4.9768 0.4203 17 7 3.6921 3.5405 1.2513 18 6 2.4747 4.1075 1.3657 19 8 1.7006 4.0753 0.4326 20 6 2.0758 4.7825 2.6527 21 1 2.0962 4.0595 3.4682 22 6 0.6638 5.3670 2.5143 23 6 0.3635 6.2704 3.7133 24 6 1.2167 7.5425 3.6251 25 6 2.6466 7.1379 3.3812 26 7 3.7578 7.8522 3.5284 27 7 4.7674 7.1142 3.2108 28 7 4.3680 5.9382 2.8582 29 1 4.9358 5.2041 2.5760 30 6 3.0275 5.9101 2.9502 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9562 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 3.9338 0.9284 -0.8892 39 1 3.9330 0.9286 0.8909 40 1 6.0352 2.2738 0.6670 41 1 5.8904 2.4794 -1.0950 42 1 5.4810 4.9907 0.1304 43 1 7.4048 7.7114 0.2880 44 1 4.3113 3.5667 1.9976 45 1 -0.0632 4.5556 2.4800 46 1 0.6005 5.9501 1.5955 47 1 0.5982 5.7393 4.6358 48 1 -0.6924 6.5405 3.7089 49 1 0.8652 8.1641 2.8015 50 1 1.1459 8.0979 4.5603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725231366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:49 Heat of formation + Delta-G solvation = 41.969297 kcal Electronic energy + Delta-G solvation = -30904.864108 eV Core-core repulsion = 26968.356145 eV Total energy + Delta-G solvation = -3936.507963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.19376 -40.11086 -37.37263 -36.21073 -35.06172 -33.92548 -33.42793 -31.52063 -30.56784 -30.09902 -29.91161 -27.34991 -24.78499 -24.21367 -22.91060 -22.57496 -22.33560 -21.08542 -20.82986 -20.43041 -19.46644 -18.03195 -17.41469 -16.80839 -16.45022 -15.83903 -15.49532 -15.12980 -14.73131 -14.61820 -14.02053 -13.98408 -13.93102 -13.68036 -13.62637 -13.31793 -13.12573 -12.83771 -12.71507 -12.29409 -12.19057 -12.01198 -11.51786 -11.37178 -11.27326 -11.15739 -11.11510 -11.07109 -10.99276 -10.93224 -10.86021 -10.50364 -10.45280 -10.42212 -10.09927 -10.09394 -9.80923 -9.73888 -9.00805 -8.88424 -8.63214 -7.07846 -5.83668 -3.16647 1.81288 2.60816 2.84127 3.01807 3.22114 3.40017 3.45009 3.48517 4.36814 4.41138 4.48711 4.63495 4.71451 4.76820 4.89705 4.97149 5.06840 5.14308 5.18944 5.29053 5.31086 5.35552 5.41479 5.46437 5.49006 5.67587 5.71776 5.79406 5.79845 5.81706 5.86027 5.87626 5.93692 5.98919 6.05076 6.09772 6.11097 6.17351 6.22428 6.28973 6.36660 6.40507 6.50172 6.55463 6.73930 7.14191 7.50991 7.62999 8.22711 8.31289 8.82327 9.43647 9.94115 10.29579 11.36668 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007971 B = 0.005311 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.886589 B = 5270.345664 C = 8476.496607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.126 4.126 5 C 0.136 3.864 6 H 0.090 0.910 7 C 0.141 3.859 8 N -0.734 5.734 9 C -0.260 4.260 10 H 0.070 0.930 11 C -0.002 4.002 12 N -0.917 5.917 13 Si 0.905 3.095 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.283 1.283 17 N -0.716 5.716 18 C 0.517 3.483 19 O -0.521 6.521 20 C -0.029 4.029 21 H 0.112 0.888 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.033 4.033 25 C -0.010 4.010 26 N -0.273 5.273 27 N -0.042 5.042 28 N -0.359 5.359 29 H 0.449 0.551 30 C -0.032 4.032 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.036 0.964 42 H 0.382 0.618 43 H 0.259 0.741 44 H 0.391 0.609 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 -9.854 6.892 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.032 3.968 6 H 0.108 0.892 7 C 0.013 3.987 8 N -0.379 5.379 9 C -0.390 4.390 10 H 0.088 0.912 11 C -0.200 4.200 12 N -0.563 5.563 13 Si 0.736 3.264 14 H -0.218 1.218 15 H -0.216 1.216 16 H -0.208 1.208 17 N -0.368 5.368 18 C 0.302 3.698 19 O -0.397 6.397 20 C -0.052 4.052 21 H 0.130 0.870 22 C -0.133 4.133 23 C -0.156 4.156 24 C -0.072 4.072 25 C -0.151 4.151 26 N -0.138 5.138 27 N -0.021 5.021 28 N -0.081 5.081 29 H 0.297 0.703 30 C -0.168 4.168 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.216 0.784 43 H 0.069 0.931 44 H 0.226 0.774 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.918 -8.836 6.435 18.494 hybrid contribution 0.986 -0.710 -0.190 1.230 sum -13.933 -9.546 6.245 18.007 Atomic orbital electron populations 1.21740 0.96169 1.00914 1.01874 1.21572 0.95694 0.97628 1.01401 1.21669 0.94654 0.95470 1.03160 1.21976 0.96191 0.96023 1.02355 1.21396 0.96256 0.92651 0.86489 0.89217 1.21009 0.89013 0.89499 0.99175 1.42361 1.05519 1.01741 1.88309 1.19122 0.83301 0.92538 1.44063 0.91163 1.24754 0.97606 0.95648 1.01988 1.69604 1.32896 0.99194 1.54609 0.86241 0.85196 0.77488 0.77445 1.21764 1.21623 1.20846 1.46145 1.15827 1.57714 1.17111 1.20311 0.82004 0.78195 0.89291 1.90710 1.51000 1.58346 1.39625 1.19983 0.94824 0.93808 0.96632 0.87040 1.21438 0.92200 0.99860 0.99824 1.21656 0.99949 0.95585 0.98377 1.19956 0.86538 0.97767 1.02976 1.21603 0.96908 0.90698 1.05859 1.74892 0.95800 1.25405 1.17744 1.78792 1.20287 0.88749 1.14281 1.44919 1.05889 1.13589 1.43683 0.70262 1.21322 0.85061 0.99617 1.10818 0.92943 0.92768 0.93288 0.92405 0.92601 0.91866 0.91467 0.90966 0.91889 0.95671 0.94607 0.78418 0.93082 0.77426 0.90120 0.89941 0.91392 0.90313 0.89906 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.13 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.11 -1.34 3.82 -26.74 -0.10 -1.44 16 4 C -0.13 -1.53 4.89 -26.73 -0.13 -1.66 16 5 C 0.14 2.04 2.42 -67.93 -0.16 1.87 16 6 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 7 C 0.14 2.50 5.82 -4.05 -0.02 2.48 16 8 N -0.73 -16.78 5.43 -59.91 -0.33 -17.11 16 9 C -0.26 -6.78 9.99 -15.06 -0.15 -6.93 16 10 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 11 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 12 N -0.92 -26.47 13.06 55.49 0.72 -25.74 16 13 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.72 -9.92 4.03 -53.80 -0.22 -10.13 16 18 C 0.52 7.26 5.71 -10.98 -0.06 7.20 16 19 O -0.52 -8.50 12.98 5.55 0.07 -8.43 16 20 C -0.03 -0.34 2.91 -92.78 -0.27 -0.61 16 21 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 22 C -0.09 -0.97 4.66 -26.45 -0.12 -1.10 16 23 C -0.12 -1.00 5.90 -26.46 -0.16 -1.15 16 24 C -0.03 -0.37 6.30 -27.71 -0.17 -0.54 16 25 C -0.01 -0.16 7.11 -83.13 -0.59 -0.75 16 26 N -0.27 -5.26 12.40 33.16 0.41 -4.85 16 27 N -0.04 -0.86 13.40 60.35 0.81 -0.05 16 28 N -0.36 -6.27 6.76 33.39 0.23 -6.04 16 29 H 0.45 7.68 6.82 -190.07 -1.30 6.39 16 30 C -0.03 -0.48 6.38 -82.50 -0.53 -1.01 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.81 5.65 -51.93 -0.29 0.51 16 37 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.38 9.33 7.33 -40.82 -0.30 9.03 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.39 5.13 6.64 -40.82 -0.27 4.86 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.01 7.76 -51.92 -0.40 0.61 16 47 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -31.59 394.04 -9.00 -40.59 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -9.25 Total: 15.11 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.36 Total: -6.23 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 1.63 Total: -63.92 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.07 Total: -8.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.59 -9.00 -40.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725231366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.559 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds