Wall clock time and date at job start Tue Mar 31 2020 20:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 C 1.52999 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47213 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47016 * 305.00335 * 5 4 3 7 7 C 1.52997 * 109.47504 * 185.00076 * 5 4 3 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46503 * 109.46834 * 64.99838 * 5 4 3 18 18 C 1.34773 * 120.00358 * 274.99972 * 17 5 4 19 19 O 1.21566 * 119.99903 * 0.02562 * 18 17 5 20 20 C 1.47818 * 120.00147 * 180.02562 * 18 17 5 21 21 C 1.39453 * 120.00109 * 179.72390 * 20 18 17 22 22 N 1.32031 * 119.97830 * 179.75139 * 21 20 18 23 23 C 1.32789 * 119.98884 * 0.52724 * 22 21 20 24 24 N 1.38403 * 119.99521 * 179.70395 * 23 22 21 25 25 C 1.46500 * 120.00351 * 185.01827 * 24 23 22 26 26 C 1.46505 * 119.99817 * 5.02686 * 24 23 22 27 27 C 1.39848 * 120.00936 * 359.72714 * 23 22 21 28 28 N 1.31481 * 120.01477 * 0.02562 * 27 23 22 29 29 H 1.08992 * 109.47313 * 60.00063 * 1 2 3 30 30 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47159 * 299.99780 * 1 2 3 32 32 H 1.08997 * 109.47204 * 240.00147 * 2 1 3 33 33 H 1.09006 * 109.47205 * 119.99744 * 2 1 3 34 34 H 1.08997 * 109.47118 * 60.00095 * 3 2 1 35 35 H 1.08997 * 109.46898 * 299.99625 * 3 2 1 36 36 H 1.08997 * 109.47204 * 60.00147 * 4 3 2 37 37 H 1.09001 * 109.47433 * 300.00171 * 4 3 2 38 38 H 1.09002 * 109.47153 * 64.99951 * 7 5 4 39 39 H 1.09001 * 109.46832 * 305.00142 * 7 5 4 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 41 41 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 42 42 H 0.97007 * 119.99919 * 95.00541 * 17 5 4 43 43 H 1.07997 * 120.01105 * 0.02562 * 21 20 18 44 44 H 1.09008 * 109.46574 * 89.99983 * 25 24 23 45 45 H 1.08990 * 109.47455 * 210.00162 * 25 24 23 46 46 H 1.09005 * 109.46992 * 330.00665 * 25 24 23 47 47 H 1.09000 * 109.47655 * 90.00089 * 26 24 23 48 48 H 1.09000 * 109.46679 * 209.99487 * 26 24 23 49 49 H 1.08994 * 109.47005 * 329.99068 * 26 24 23 50 50 H 1.07998 * 119.99440 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1251 8 7 6.1029 4.2595 -0.0059 9 6 7.4468 4.5095 -0.0867 10 1 8.1395 3.6949 -0.2386 11 6 7.9188 5.8099 0.0268 12 7 7.0748 6.8026 0.2124 13 14 9.7521 6.1512 -0.0841 14 1 10.1238 6.4038 -1.4994 15 1 10.0840 7.3442 0.7355 16 1 10.5058 4.9767 0.4235 17 7 3.6918 3.5407 1.2513 18 6 2.4745 4.1077 1.3656 19 8 1.6983 4.0746 0.4306 20 6 2.0831 4.7698 2.6280 21 6 0.8257 5.3615 2.7443 22 7 0.4747 5.9484 3.8737 23 6 1.3230 5.9842 4.8946 24 7 0.9575 6.6048 6.0765 25 6 1.9302 6.7414 7.1635 26 6 -0.4022 7.1250 6.2407 27 6 2.5859 5.3953 4.7757 28 7 2.9339 4.8065 3.6527 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 5.8903 2.4797 -1.0951 39 1 6.0350 2.2741 0.6671 40 1 5.4808 4.9909 0.1309 41 1 7.4046 7.7113 0.2921 42 1 4.3110 3.5669 1.9975 43 1 0.1375 5.3357 1.9124 44 1 2.4717 7.6807 7.0504 45 1 1.4088 6.7355 8.1205 46 1 2.6340 5.9098 7.1279 47 1 -1.0396 6.3487 6.6640 48 1 -0.3838 7.9850 6.9101 49 1 -0.7947 7.4284 5.2702 50 1 3.2755 5.4242 5.6063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725234541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:03 Heat of formation + Delta-G solvation = 25.151603 kcal Electronic energy + Delta-G solvation = -29324.246004 eV Core-core repulsion = 25387.008771 eV Total energy + Delta-G solvation = -3937.237233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21351 -39.42651 -37.24530 -36.33572 -34.85046 -34.23587 -33.35001 -31.48425 -30.69166 -30.12758 -28.76324 -27.26642 -26.26428 -24.25008 -24.09365 -22.95624 -22.19068 -21.02321 -20.66426 -19.98430 -18.10926 -17.79339 -17.37501 -16.82548 -16.09087 -15.87028 -15.25151 -15.13990 -14.76994 -14.68121 -14.65461 -14.19115 -13.95512 -13.76200 -13.26788 -13.22056 -13.08270 -12.93622 -12.68089 -12.66362 -12.55944 -12.34643 -12.01286 -11.84864 -11.50059 -11.33890 -11.24015 -11.02153 -10.86631 -10.78744 -10.74078 -10.31684 -10.26688 -10.17379 -9.96140 -9.87522 -9.67693 -9.05050 -8.86286 -8.52785 -7.90990 -6.90017 -5.72510 -3.02105 0.67864 1.15300 2.47664 3.03536 3.45230 3.50085 3.51842 3.52338 3.98371 4.17004 4.20800 4.33937 4.60216 4.74757 4.88220 4.92977 4.94667 5.06749 5.12770 5.18921 5.25981 5.27993 5.29821 5.48088 5.51096 5.53309 5.54615 5.60560 5.62758 5.89851 5.94840 6.03107 6.04761 6.06137 6.12455 6.23559 6.28875 6.38624 6.40366 6.54388 6.56071 6.71094 6.78186 6.81993 7.04659 7.33733 7.72390 7.72669 8.04906 8.44886 8.61311 9.56723 10.13764 10.49123 11.49707 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006736 B = 0.004027 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4155.654363 B = 6951.365320 C =10492.338958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.126 4.126 5 C 0.137 3.863 6 H 0.089 0.911 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.689 5.689 18 C 0.583 3.417 19 O -0.542 6.542 20 C -0.039 4.039 21 C 0.166 3.834 22 N -0.509 5.509 23 C 0.367 3.633 24 N -0.602 5.602 25 C 0.088 3.912 26 C 0.094 3.906 27 C -0.005 4.005 28 N -0.367 5.367 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.412 0.588 43 H 0.181 0.819 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 -5.877 12.986 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.032 3.968 6 H 0.107 0.893 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 N -0.339 5.339 18 C 0.367 3.633 19 O -0.420 6.420 20 C -0.180 4.180 21 C 0.005 3.995 22 N -0.232 5.232 23 C 0.128 3.872 24 N -0.315 5.315 25 C -0.055 4.055 26 C -0.049 4.049 27 C -0.177 4.177 28 N -0.082 5.082 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.249 0.751 43 H 0.198 0.802 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.177 -5.860 12.419 21.220 hybrid contribution 1.209 0.696 0.486 1.477 sum -14.968 -5.164 12.905 20.427 Atomic orbital electron populations 1.21742 0.96307 1.00770 1.01854 1.21574 0.95577 0.97814 1.01312 1.21671 0.94800 0.95274 1.03230 1.21978 0.96086 0.96280 1.02186 1.21355 0.96114 0.92463 0.86862 0.89341 1.20963 0.89253 0.89399 0.98736 1.42346 1.05394 1.02028 1.87769 1.19209 0.83678 0.92448 1.41837 0.91174 1.24736 0.97559 0.95695 1.02821 1.69679 1.32799 0.98937 1.56426 0.86203 0.85268 0.77354 0.77420 1.21774 1.21867 1.20773 1.45787 1.15582 1.55312 1.17215 1.17389 0.82446 0.78021 0.85429 1.90767 1.51968 1.60362 1.38904 1.21798 0.94015 1.06514 0.95680 1.23476 0.94308 0.87780 0.93968 1.68084 1.33913 1.21188 0.99993 1.19600 0.91052 0.89395 0.87200 1.46159 1.13176 1.60005 1.12146 1.21867 0.92379 1.02519 0.88724 1.21678 0.81651 0.98259 1.03343 1.23189 0.95347 1.01508 0.97645 1.68170 1.31581 1.09965 0.98505 0.92748 0.93399 0.93020 0.92425 0.92675 0.91830 0.91414 0.91099 0.91954 0.94872 0.95802 0.77948 0.93600 0.75118 0.80241 0.92085 0.90483 0.90506 0.93020 0.91411 0.89920 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.26 16 2 C -0.13 -1.47 5.93 -26.73 -0.16 -1.62 16 3 C -0.11 -1.57 3.81 -26.73 -0.10 -1.67 16 4 C -0.13 -1.79 4.89 -26.73 -0.13 -1.92 16 5 C 0.14 2.37 2.42 -67.93 -0.16 2.21 16 6 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 7 C 0.14 2.89 5.82 -4.04 -0.02 2.87 16 8 N -0.73 -18.61 5.43 -59.91 -0.33 -18.93 16 9 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.69 -12.07 4.46 -54.76 -0.24 -12.31 16 18 C 0.58 10.25 6.37 -12.34 -0.08 10.17 16 19 O -0.54 -10.15 13.46 5.31 0.07 -10.08 16 20 C -0.04 -0.63 6.74 -82.88 -0.56 -1.19 16 21 C 0.17 2.41 10.76 -17.01 -0.18 2.23 16 22 N -0.51 -6.97 9.22 -11.95 -0.11 -7.08 16 23 C 0.37 4.56 7.37 -155.00 -1.14 3.42 16 24 N -0.60 -5.55 3.37 -189.51 -0.64 -6.19 16 25 C 0.09 0.51 10.28 59.85 0.62 1.13 16 26 C 0.09 0.69 10.50 59.85 0.63 1.32 16 27 C 0.00 -0.06 10.42 -17.10 -0.18 -0.24 16 28 N -0.37 -5.75 9.69 -9.45 -0.09 -5.84 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.99 5.65 -51.93 -0.29 0.69 16 35 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.39 10.60 7.33 -40.82 -0.30 10.30 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.41 7.43 7.94 -40.82 -0.32 7.11 16 43 H 0.18 2.36 7.63 -52.49 -0.40 1.96 16 44 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 45 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 46 H 0.08 0.40 5.98 -51.93 -0.31 0.09 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 49 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 50 H 0.17 1.66 6.02 -52.49 -0.32 1.34 16 LS Contribution 405.41 15.07 6.11 6.11 Total: -1.00 -33.49 405.41 -9.04 -42.53 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -8.16 Total: 13.98 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.35 Total: 8.09 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -0.69 Total: -78.18 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.49 -9.04 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725234541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.683 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds