Wall clock time and date at job start Tue Mar 31 2020 20:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46807 * 2 1 4 4 C 1.52999 * 109.46807 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47213 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47016 * 305.00335 * 5 4 3 7 7 C 1.52997 * 109.47504 * 185.00076 * 5 4 3 8 8 N 1.46505 * 109.47212 * 184.99959 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46951 * 89.99797 * 13 11 9 15 15 H 1.48500 * 109.47313 * 210.00112 * 13 11 9 16 16 H 1.48501 * 109.46991 * 330.00153 * 13 11 9 17 17 N 1.46503 * 109.46834 * 64.99838 * 5 4 3 18 18 C 1.34773 * 120.00358 * 274.99972 * 17 5 4 19 19 O 1.21566 * 119.99903 * 0.02562 * 18 17 5 20 20 C 1.47818 * 120.00147 * 180.02562 * 18 17 5 21 21 C 1.39453 * 120.00109 * 179.72390 * 20 18 17 22 22 N 1.32031 * 119.97830 * 179.75139 * 21 20 18 23 23 C 1.32789 * 119.98884 * 0.52724 * 22 21 20 24 24 N 1.38403 * 119.99521 * 179.70395 * 23 22 21 25 25 C 1.46500 * 120.00351 * 185.01827 * 24 23 22 26 26 C 1.46505 * 119.99817 * 5.02686 * 24 23 22 27 27 C 1.39848 * 120.00936 * 359.72714 * 23 22 21 28 28 N 1.31481 * 120.01477 * 0.02562 * 27 23 22 29 29 H 1.08992 * 109.47313 * 60.00063 * 1 2 3 30 30 H 1.09006 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47159 * 299.99780 * 1 2 3 32 32 H 1.08997 * 109.47204 * 240.00147 * 2 1 3 33 33 H 1.09006 * 109.47205 * 119.99744 * 2 1 3 34 34 H 1.08997 * 109.47118 * 60.00095 * 3 2 1 35 35 H 1.08997 * 109.46898 * 299.99625 * 3 2 1 36 36 H 1.08997 * 109.47204 * 60.00147 * 4 3 2 37 37 H 1.09001 * 109.47433 * 300.00171 * 4 3 2 38 38 H 1.09002 * 109.47153 * 64.99951 * 7 5 4 39 39 H 1.09001 * 109.46832 * 305.00142 * 7 5 4 40 40 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 41 41 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 42 42 H 0.97007 * 119.99919 * 95.00541 * 17 5 4 43 43 H 1.07997 * 120.01105 * 0.02562 * 21 20 18 44 44 H 1.09008 * 109.46574 * 89.99983 * 25 24 23 45 45 H 1.08990 * 109.47455 * 210.00162 * 25 24 23 46 46 H 1.09005 * 109.46992 * 330.00665 * 25 24 23 47 47 H 1.09000 * 109.47655 * 90.00089 * 26 24 23 48 48 H 1.09000 * 109.46679 * 209.99487 * 26 24 23 49 49 H 1.08994 * 109.47005 * 329.99068 * 26 24 23 50 50 H 1.07998 * 119.99440 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1251 8 7 6.1029 4.2595 -0.0059 9 6 7.4468 4.5095 -0.0867 10 1 8.1395 3.6949 -0.2386 11 6 7.9188 5.8099 0.0268 12 7 7.0748 6.8026 0.2124 13 14 9.7521 6.1512 -0.0841 14 1 10.1238 6.4038 -1.4994 15 1 10.0840 7.3442 0.7355 16 1 10.5058 4.9767 0.4235 17 7 3.6918 3.5407 1.2513 18 6 2.4745 4.1077 1.3656 19 8 1.6983 4.0746 0.4306 20 6 2.0831 4.7698 2.6280 21 6 0.8257 5.3615 2.7443 22 7 0.4747 5.9484 3.8737 23 6 1.3230 5.9842 4.8946 24 7 0.9575 6.6048 6.0765 25 6 1.9302 6.7414 7.1635 26 6 -0.4022 7.1250 6.2407 27 6 2.5859 5.3953 4.7757 28 7 2.9339 4.8065 3.6527 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 5.8903 2.4797 -1.0951 39 1 6.0350 2.2741 0.6671 40 1 5.4808 4.9909 0.1309 41 1 7.4046 7.7113 0.2921 42 1 4.3110 3.5669 1.9975 43 1 0.1375 5.3357 1.9124 44 1 2.4717 7.6807 7.0504 45 1 1.4088 6.7355 8.1205 46 1 2.6340 5.9098 7.1279 47 1 -1.0396 6.3487 6.6640 48 1 -0.3838 7.9850 6.9101 49 1 -0.7947 7.4284 5.2702 50 1 3.2755 5.4242 5.6063 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725234541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:01 Heat of formation + Delta-G solvation = 2.625212 kcal Electronic energy + Delta-G solvation = -29325.222822 eV Core-core repulsion = 25387.008771 eV Total energy + Delta-G solvation = -3938.214051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.27494 -40.72973 -38.19197 -37.66084 -36.23896 -35.39933 -34.89313 -33.03284 -32.13725 -31.32374 -29.36677 -28.74125 -27.26664 -25.84738 -25.21236 -23.91671 -23.74006 -22.26736 -21.77807 -21.35258 -19.44513 -19.04727 -18.68304 -18.16230 -17.37878 -16.82000 -16.67903 -16.33985 -16.11485 -15.84163 -15.54647 -15.44840 -15.26626 -15.10020 -14.80948 -14.43022 -14.38644 -14.09400 -13.77228 -13.49598 -13.44175 -13.30209 -13.13925 -12.93049 -12.85096 -12.77988 -12.52471 -12.48698 -12.38841 -12.11028 -11.99335 -11.85176 -11.83475 -11.38933 -11.36002 -11.18248 -11.11320 -10.94452 -10.15301 -9.90814 -8.99318 -8.78120 -7.92010 -5.21971 -0.41556 0.09564 1.48154 1.50256 1.58589 1.70533 1.79356 2.23035 2.57435 2.83444 3.12125 3.23847 3.37388 3.42110 3.64905 3.91471 4.02801 4.06248 4.10893 4.22640 4.27471 4.34031 4.36617 4.38830 4.48163 4.55571 4.58324 4.63233 4.75093 4.87231 4.90157 4.91578 4.93219 4.97115 5.02088 5.08709 5.11741 5.16684 5.24998 5.35717 5.44749 5.51674 5.59578 5.65609 5.66674 5.96024 6.27721 6.31346 6.56661 6.80305 7.25120 7.34847 8.09055 8.32904 9.31137 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006736 B = 0.004027 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4155.654363 B = 6951.365320 C =10492.338958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.064 0.936 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.080 0.920 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.290 1.290 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.690 5.690 18 C 0.581 3.419 19 O -0.563 6.563 20 C -0.072 4.072 21 C 0.169 3.831 22 N -0.521 5.521 23 C 0.367 3.633 24 N -0.593 5.593 25 C 0.077 3.923 26 C 0.088 3.912 27 C -0.004 4.004 28 N -0.389 5.389 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.409 0.591 43 H 0.184 0.816 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 -6.865 14.933 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.082 0.918 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.217 1.217 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.340 5.340 18 C 0.367 3.633 19 O -0.442 6.442 20 C -0.211 4.211 21 C 0.008 3.992 22 N -0.245 5.245 23 C 0.125 3.875 24 N -0.303 5.303 25 C -0.064 4.064 26 C -0.054 4.054 27 C -0.178 4.178 28 N -0.104 5.104 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.245 0.755 43 H 0.201 0.799 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -15.920 -6.893 14.379 22.533 hybrid contribution 1.044 1.055 0.062 1.485 sum -14.877 -5.838 14.440 21.539 Atomic orbital electron populations 1.21734 0.95767 1.01799 1.01300 1.21540 0.96073 0.95963 1.02244 1.21550 0.94565 0.96700 1.01437 1.21914 0.96144 0.93988 1.03487 1.21222 0.94249 0.94257 0.86192 0.91793 1.21120 0.90907 0.86828 0.99267 1.42537 1.04555 1.03773 1.87748 1.19654 0.84974 0.92740 1.40080 0.90208 1.25572 1.01928 0.95653 1.03561 1.69858 1.34738 0.99003 1.58443 0.85124 0.80195 0.77249 0.77065 1.21692 1.22414 1.19074 1.45761 1.15624 1.55655 1.16937 1.17647 0.82116 0.77632 0.85934 1.90735 1.52444 1.61226 1.39841 1.21542 0.95093 1.08905 0.95603 1.23504 0.93806 0.87388 0.94538 1.68149 1.34313 1.21854 1.00161 1.19892 0.90788 0.88906 0.87905 1.46605 1.14459 1.57792 1.11441 1.22194 0.92373 1.03163 0.88675 1.21853 0.80749 0.99641 1.03182 1.23703 0.96091 1.00552 0.97499 1.68094 1.32041 1.11022 0.99260 0.93196 0.91525 0.93762 0.91238 0.91874 0.93663 0.93263 0.89431 0.90806 0.94072 0.94522 0.79552 0.94265 0.75477 0.79898 0.91410 0.87625 0.89732 0.91943 0.88523 0.91625 0.78432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.38 16 2 C -0.12 -2.67 5.93 30.60 0.18 -2.49 16 3 C -0.10 -2.96 3.81 30.60 0.12 -2.84 16 4 C -0.12 -3.24 4.89 30.59 0.15 -3.09 16 5 C 0.15 5.16 2.42 44.99 0.11 5.27 16 6 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 7 C 0.15 5.80 5.82 86.38 0.50 6.31 16 8 N -0.74 -38.43 5.43 -343.45 -1.87 -40.30 16 9 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 10 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 11 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 12 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 13 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 14 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 N -0.69 -25.16 4.46 -445.43 -1.99 -27.14 16 18 C 0.58 21.58 6.37 86.78 0.55 22.13 16 19 O -0.56 -22.38 13.46 -3.92 -0.05 -22.44 16 20 C -0.07 -2.45 6.74 41.76 0.28 -2.17 16 21 C 0.17 5.12 10.76 84.96 0.91 6.03 16 22 N -0.52 -14.34 9.22 -191.73 -1.77 -16.11 16 23 C 0.37 8.78 7.37 133.32 0.98 9.76 16 24 N -0.59 -9.56 3.37 -753.49 -2.54 -12.10 16 25 C 0.08 0.65 10.28 127.77 1.31 1.97 16 26 C 0.09 1.10 10.50 127.77 1.34 2.44 16 27 C 0.00 -0.10 10.42 85.14 0.89 0.79 16 28 N -0.39 -12.45 9.69 -183.80 -1.78 -14.23 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.45 5.65 -2.39 -0.01 1.43 16 35 H 0.05 1.56 7.84 -2.39 -0.02 1.54 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.37 21.17 7.33 -92.71 -0.68 20.49 16 41 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.41 15.29 7.94 -92.70 -0.74 14.56 16 43 H 0.18 5.16 7.63 -2.91 -0.02 5.14 16 44 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.11 0.35 8.07 -2.39 -0.02 0.33 16 46 H 0.08 0.62 5.98 -2.38 -0.01 0.60 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.68 8.07 -2.39 -0.02 0.66 16 49 H 0.06 1.09 7.30 -2.39 -0.02 1.07 16 50 H 0.20 3.51 6.02 -2.91 -0.02 3.49 16 Total: -1.00 -73.78 405.41 1.20 -72.57 By element: Atomic # 1 Polarization: 47.11 SS G_CDS: -0.46 Total: 46.65 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 9.35 Total: 25.05 kcal Atomic # 7 Polarization: -160.77 SS G_CDS: -9.66 Total: -170.44 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.78 1.20 -72.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725234541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.200 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds