Wall clock time and date at job start Tue Mar 31 2020 20:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46877 * 2 1 4 4 C 1.53003 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47571 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.46875 * 54.99728 * 5 4 3 7 7 C 1.52999 * 109.47524 * 174.99919 * 5 4 3 8 8 N 1.46494 * 109.47192 * 175.00258 * 7 5 4 9 9 C 1.36943 * 119.99885 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99679 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00029 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99922 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00185 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47325 * 89.99600 * 13 11 9 15 15 H 1.48498 * 109.47212 * 210.00223 * 13 11 9 16 16 H 1.48511 * 109.46838 * 330.00159 * 13 11 9 17 17 N 1.46499 * 109.47022 * 295.00144 * 5 4 3 18 18 C 1.34784 * 119.99971 * 84.99732 * 17 5 4 19 19 O 1.21561 * 119.99904 * 359.72721 * 18 17 5 20 20 C 1.47821 * 119.99673 * 179.97438 * 18 17 5 21 21 C 1.39453 * 120.00010 * 179.72219 * 20 18 17 22 22 N 1.32017 * 119.97857 * 179.75714 * 21 20 18 23 23 C 1.32788 * 119.99354 * 0.52681 * 22 21 20 24 24 N 1.38405 * 119.99862 * 179.70900 * 23 22 21 25 25 C 1.46506 * 119.99963 * 185.01638 * 24 23 22 26 26 C 1.46495 * 120.00306 * 5.02141 * 24 23 22 27 27 C 1.39854 * 120.00549 * 359.72846 * 23 22 21 28 28 N 1.31475 * 120.01782 * 359.97438 * 27 23 22 29 29 H 1.08997 * 109.47207 * 299.99999 * 1 2 3 30 30 H 1.09002 * 109.46957 * 60.00214 * 1 2 3 31 31 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47207 * 240.00001 * 2 1 3 33 33 H 1.09002 * 109.46957 * 119.99786 * 2 1 3 34 34 H 1.08997 * 109.47202 * 59.99997 * 3 2 1 35 35 H 1.08994 * 109.47637 * 300.00058 * 3 2 1 36 36 H 1.08997 * 109.46933 * 59.99970 * 4 3 2 37 37 H 1.09002 * 109.46704 * 300.00467 * 4 3 2 38 38 H 1.09001 * 109.46859 * 295.00018 * 7 5 4 39 39 H 1.09000 * 109.46643 * 54.99720 * 7 5 4 40 40 H 0.97004 * 120.00480 * 359.97438 * 8 7 5 41 41 H 0.96999 * 120.00028 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99984 * 264.99579 * 17 5 4 43 43 H 1.07996 * 120.00925 * 0.02562 * 21 20 18 44 44 H 1.09004 * 109.46514 * 90.00264 * 25 24 23 45 45 H 1.09000 * 109.47230 * 209.99669 * 25 24 23 46 46 H 1.09001 * 109.47493 * 330.00511 * 25 24 23 47 47 H 1.09001 * 109.47515 * 59.99479 * 26 24 23 48 48 H 1.09002 * 109.47763 * 179.97438 * 26 24 23 49 49 H 1.09008 * 109.47026 * 300.00148 * 26 24 23 50 50 H 1.08000 * 119.98806 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6449 3.4238 0.8431 7 6 5.6047 2.8869 0.1277 8 7 6.1029 4.2593 0.0086 9 6 7.4468 4.5094 0.0904 10 1 8.1393 3.6948 0.2431 11 6 7.9190 5.8098 -0.0230 12 7 7.0750 6.8025 -0.2096 13 14 9.7522 6.1509 0.0879 14 1 10.3520 6.0790 -1.2686 15 1 9.9701 7.5062 0.6544 16 1 10.3918 5.1385 0.9662 17 7 3.6929 3.5404 -1.2505 18 6 2.4756 4.1073 -1.3659 19 8 1.6970 4.0705 -0.4331 20 6 2.0853 4.7690 -2.6288 21 6 0.8236 5.3506 -2.7504 22 7 0.4773 5.9456 -3.8768 23 6 1.3264 5.9811 -4.8971 24 7 0.9611 6.5997 -6.0801 25 6 1.8525 6.5439 -7.2415 26 6 -0.3167 7.3103 -6.1711 27 6 2.5896 5.3931 -4.7766 28 7 2.9370 4.8055 -3.6529 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9336 0.9286 -0.8891 37 1 3.9329 0.9288 0.8909 38 1 5.8893 2.4800 1.0980 39 1 6.0356 2.2738 -0.6640 40 1 5.4810 4.9909 -0.1290 41 1 7.4049 7.7113 -0.2885 42 1 4.3127 3.5663 -1.9962 43 1 0.1317 5.3179 -1.9218 44 1 1.6145 5.6647 -7.8402 45 1 1.7192 7.4416 -7.8453 46 1 2.8869 6.4838 -6.9031 47 1 -0.3384 8.1146 -5.4358 48 1 -0.4291 7.7295 -7.1710 49 1 -1.1335 6.6158 -5.9740 50 1 3.2801 5.4225 -5.6065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725234542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:06 Heat of formation + Delta-G solvation = 1.569038 kcal Electronic energy + Delta-G solvation = -29324.019194 eV Core-core repulsion = 25385.759344 eV Total energy + Delta-G solvation = -3938.259850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.27372 -40.73083 -38.19314 -37.66364 -36.23935 -35.40098 -34.89373 -33.03361 -32.14163 -31.32800 -29.35378 -28.74176 -27.27382 -25.84787 -25.21846 -23.92077 -23.74055 -22.27148 -21.77871 -21.35583 -19.44400 -19.04640 -18.67566 -18.15629 -17.37768 -16.83064 -16.65522 -16.42074 -16.05388 -15.84812 -15.55922 -15.43711 -15.26641 -15.10404 -14.81820 -14.43924 -14.35950 -14.10147 -13.77478 -13.49641 -13.47831 -13.32166 -13.13732 -12.86428 -12.84505 -12.78347 -12.54565 -12.49562 -12.39039 -12.11727 -11.99489 -11.85264 -11.83486 -11.39215 -11.36661 -11.18176 -11.10291 -10.94194 -10.15684 -9.90773 -8.99341 -8.79083 -7.92128 -5.22049 -0.41957 0.09663 1.48164 1.50196 1.58592 1.70724 1.79427 2.22713 2.57409 2.83547 3.11722 3.23631 3.37538 3.42014 3.64831 3.91542 4.02902 4.06382 4.10864 4.20477 4.27444 4.33946 4.35686 4.38520 4.50587 4.56073 4.58286 4.63133 4.74164 4.87162 4.89898 4.90998 4.93133 4.96910 5.02015 5.06681 5.11269 5.16646 5.24912 5.35661 5.44696 5.51639 5.59564 5.65263 5.66537 5.95679 6.27669 6.31558 6.56886 6.80462 7.24875 7.34756 8.09002 8.32787 9.31032 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006728 B = 0.004022 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4160.887831 B = 6960.546202 C =10479.557040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.117 4.117 5 C 0.146 3.854 6 H 0.064 0.936 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.080 0.920 11 C -0.075 4.075 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.286 1.286 15 H -0.299 1.299 16 H -0.268 1.268 17 N -0.690 5.690 18 C 0.581 3.419 19 O -0.562 6.562 20 C -0.072 4.072 21 C 0.168 3.832 22 N -0.521 5.521 23 C 0.366 3.634 24 N -0.593 5.593 25 C 0.077 3.923 26 C 0.095 3.905 27 C -0.003 4.003 28 N -0.389 5.389 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.409 0.591 43 H 0.184 0.816 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.050 0.950 48 H 0.109 0.891 49 H 0.056 0.944 50 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.425 -6.801 -15.019 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.155 4.155 5 C 0.041 3.959 6 H 0.082 0.918 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.375 4.375 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.213 1.213 15 H -0.226 1.226 16 H -0.193 1.193 17 N -0.340 5.340 18 C 0.367 3.633 19 O -0.442 6.442 20 C -0.211 4.211 21 C 0.007 3.993 22 N -0.244 5.244 23 C 0.124 3.876 24 N -0.303 5.303 25 C -0.064 4.064 26 C -0.047 4.047 27 C -0.178 4.178 28 N -0.105 5.105 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.245 0.755 43 H 0.201 0.799 44 H 0.094 0.906 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.127 0.873 49 H 0.075 0.925 50 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -15.838 -6.825 -14.446 22.497 hybrid contribution 1.030 1.039 -0.063 1.465 sum -14.808 -5.786 -14.508 21.523 Atomic orbital electron populations 1.21734 0.95771 1.01798 1.01297 1.21538 0.96071 0.95966 1.02244 1.21550 0.94564 0.96694 1.01446 1.21914 0.96144 0.93986 1.03485 1.21223 0.94261 0.94264 0.86171 0.91795 1.21117 0.90905 0.86829 0.99265 1.42538 1.04563 1.03778 1.87738 1.19657 0.84973 0.92737 1.40095 0.90212 1.25577 1.01935 0.95645 1.03564 1.69863 1.34728 0.99001 1.58449 0.85120 0.80138 0.76705 0.77653 1.21255 1.22604 1.19306 1.45761 1.15631 1.55643 1.16939 1.17649 0.82131 0.77640 0.85918 1.90734 1.52280 1.61209 1.39994 1.21549 0.95204 1.08868 0.95465 1.23496 0.93942 0.87325 0.94530 1.68162 1.33852 1.21832 1.00600 1.19897 0.90447 0.89213 0.88037 1.46615 1.21968 1.53292 1.08461 1.22234 0.93781 1.04613 0.85767 1.21795 0.83268 0.95978 1.03684 1.23716 0.95449 1.00951 0.97634 1.68101 1.32264 1.10859 0.99243 0.93204 0.93761 0.91523 0.91874 0.91237 0.93272 0.93651 0.90809 0.89429 0.94080 0.94516 0.79551 0.94269 0.75480 0.79927 0.90647 0.87819 0.90161 0.93133 0.87257 0.92511 0.78403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.12 -2.68 5.93 30.59 0.18 -2.49 16 3 C -0.10 -2.96 3.81 30.59 0.12 -2.84 16 4 C -0.12 -3.24 4.89 30.59 0.15 -3.09 16 5 C 0.15 5.16 2.41 44.99 0.11 5.27 16 6 H 0.06 2.59 7.58 -2.38 -0.02 2.57 16 7 C 0.15 5.81 5.82 86.38 0.50 6.31 16 8 N -0.74 -38.45 5.43 -343.46 -1.87 -40.32 16 9 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 10 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 11 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 12 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 13 Si 0.97 46.59 29.55 68.60 2.03 48.61 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 15 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 N -0.69 -25.19 4.46 -445.42 -1.99 -27.18 16 18 C 0.58 21.62 6.38 86.78 0.55 22.18 16 19 O -0.56 -22.41 13.44 -3.91 -0.05 -22.46 16 20 C -0.07 -2.44 6.74 41.76 0.28 -2.16 16 21 C 0.17 5.13 10.76 84.96 0.91 6.04 16 22 N -0.52 -14.47 9.71 -191.74 -1.86 -16.33 16 23 C 0.37 8.80 7.37 133.33 0.98 9.78 16 24 N -0.59 -9.54 3.37 -753.47 -2.54 -12.08 16 25 C 0.08 0.62 10.25 127.77 1.31 1.93 16 26 C 0.09 1.20 10.19 127.77 1.30 2.50 16 27 C 0.00 -0.08 10.42 85.14 0.89 0.81 16 28 N -0.39 -12.50 9.69 -183.79 -1.78 -14.28 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.55 7.84 -2.39 -0.02 1.54 16 35 H 0.04 1.45 5.64 -2.39 -0.01 1.44 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.37 21.18 7.33 -92.71 -0.68 20.50 16 41 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.41 15.32 7.94 -92.71 -0.74 14.58 16 43 H 0.18 5.19 7.63 -2.91 -0.02 5.16 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.10 0.36 7.92 -2.39 -0.02 0.34 16 46 H 0.08 0.64 5.98 -2.39 -0.01 0.63 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.11 0.61 7.79 -2.39 -0.02 0.59 16 49 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.20 3.52 6.02 -2.91 -0.02 3.51 16 Total: -1.00 -74.12 405.95 1.07 -73.06 By element: Atomic # 1 Polarization: 46.88 SS G_CDS: -0.46 Total: 46.41 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 9.31 Total: 25.15 kcal Atomic # 7 Polarization: -161.01 SS G_CDS: -9.76 Total: -170.77 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -74.12 1.07 -73.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725234542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.624 kcal (2) G-P(sol) polarization free energy of solvation -74.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds