Wall clock time and date at job start Tue Mar 31 2020 20:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 C 1.52998 * 109.47384 * 185.00170 * 6 4 2 8 8 N 1.46493 * 109.47105 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99920 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99838 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.36590 * 125.76982 * 179.97438 * 11 9 8 13 13 N 1.34814 * 106.84008 * 179.97438 * 12 11 9 14 14 C 1.46500 * 126.59877 * 179.97438 * 13 12 11 15 15 C 1.53777 * 113.61073 * 14.14493 * 14 13 12 16 16 C 1.53955 * 87.01986 * 220.04599 * 15 14 13 17 17 C 1.53773 * 87.11125 * 25.36410 * 16 15 14 18 18 N 1.40211 * 106.81150 * 0.02562 * 13 12 11 19 19 N 1.28769 * 108.36487 * 359.74393 * 18 13 12 20 20 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 30 30 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 31 31 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 33 33 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 35 35 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 36 36 H 1.08997 * 109.46795 * 304.99831 * 6 4 2 37 37 H 1.08999 * 109.47341 * 64.99651 * 6 4 2 38 38 H 1.09011 * 109.46808 * 299.99793 * 7 6 4 39 39 H 1.08999 * 109.47306 * 59.99458 * 7 6 4 40 40 H 0.97002 * 120.00686 * 359.97438 * 8 7 6 41 41 H 1.08001 * 126.58132 * 359.97438 * 12 11 9 42 42 H 1.08998 * 112.85000 * 145.33460 * 14 13 12 43 43 H 1.09000 * 113.61580 * 334.56393 * 15 14 13 44 44 H 1.08999 * 113.61706 * 105.46386 * 15 14 13 45 45 H 1.09001 * 113.53498 * 270.80767 * 16 15 14 46 46 H 1.09000 * 113.74368 * 139.94649 * 16 15 14 47 47 H 1.09003 * 113.61541 * 220.09276 * 17 16 15 48 48 H 1.09000 * 113.61617 * 89.18633 * 17 16 15 49 49 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 50 50 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 1.9347 -2.8478 2.5565 8 7 1.4470 -4.2292 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3106 -4.6044 4.5680 11 6 1.1973 -6.4204 3.6133 12 6 1.3737 -7.3297 4.6172 13 7 0.7746 -8.4704 4.2207 14 6 0.7039 -9.7265 4.9714 15 6 1.0873 -9.5806 6.4535 16 6 1.8216 -10.9264 6.3130 17 6 1.9530 -10.6096 4.8140 18 7 0.2332 -8.2241 2.9510 19 7 0.4967 -7.0059 2.6270 20 7 3.5050 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2015 2.1466 23 6 5.5773 0.3549 1.7508 24 7 6.2358 -0.6800 1.2736 25 14 6.5107 1.8210 2.4355 26 1 7.9708 1.5730 2.3266 27 1 6.1563 3.0384 1.6624 28 1 6.1470 2.0171 3.8618 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4438 -2.1651 1.1596 37 1 1.9646 -2.7028 0.4074 38 1 3.0212 -2.8465 2.6461 39 1 1.5001 -2.3088 3.3984 40 1 0.9506 -4.5682 1.7949 41 1 1.8934 -7.1661 5.5497 42 1 -0.2322 -10.2619 4.8133 43 1 1.7516 -8.7395 6.6519 44 1 0.2341 -9.6163 7.1308 45 1 1.1910 -11.7903 6.5231 46 1 2.7766 -10.9621 6.8371 47 1 1.7976 -11.4748 4.1695 48 1 2.8544 -10.0502 4.5633 49 1 3.9903 -1.4819 0.8944 50 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725443074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:58 Heat of formation + Delta-G solvation = 79.378138 kcal Electronic energy + Delta-G solvation = -28536.429159 eV Core-core repulsion = 24601.543365 eV Total energy + Delta-G solvation = -3934.885794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.50108 -39.58096 -39.02937 -37.48481 -34.73354 -33.42583 -33.31116 -31.49590 -30.76687 -29.17778 -26.76794 -26.50161 -26.25700 -25.16063 -23.51549 -22.73606 -22.63486 -21.14834 -20.54755 -20.12437 -19.22576 -18.48522 -17.33249 -16.61729 -16.51179 -15.94151 -15.86892 -15.15051 -14.97193 -14.67418 -14.26751 -14.25091 -13.83876 -13.65895 -13.52866 -13.32700 -13.21225 -13.09266 -12.71646 -12.56261 -12.27619 -12.01927 -11.68821 -11.59151 -11.52772 -11.42950 -11.17005 -11.14105 -10.91317 -10.73182 -10.54262 -10.51562 -10.32103 -10.07145 -10.04696 -9.85574 -9.75774 -9.48074 -9.08603 -8.83279 -8.74997 -6.94354 -6.00587 -3.00032 0.90894 1.61184 1.72058 3.22430 3.35030 3.51324 3.56756 3.60316 3.69868 3.77270 3.99891 4.02890 4.03958 4.49314 4.61343 4.73737 4.79999 4.87382 4.94398 5.05051 5.15267 5.21706 5.23154 5.26952 5.33916 5.47579 5.53014 5.58331 5.65334 5.72918 5.74685 5.90985 6.01213 6.11923 6.12854 6.22422 6.26815 6.39136 6.40913 6.55609 6.62683 6.69942 6.71717 6.82990 7.12027 7.35075 7.54714 7.82271 7.90351 8.30505 8.83809 9.30629 10.17141 10.32341 11.47248 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.002251 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.186911 B =12434.213920 C =13880.976733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.191 3.809 5 H 0.050 0.950 6 C -0.138 4.138 7 C 0.124 3.876 8 N -0.712 5.712 9 C 0.598 3.402 10 O -0.536 6.536 11 C -0.096 4.096 12 C 0.091 3.909 13 N -0.351 5.351 14 C 0.121 3.879 15 C -0.148 4.148 16 C -0.135 4.135 17 C -0.146 4.146 18 N -0.068 5.068 19 N -0.206 5.206 20 N -0.732 5.732 21 C -0.320 4.320 22 H 0.066 0.934 23 C -0.046 4.046 24 N -0.945 5.945 25 Si 1.075 2.925 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.404 0.596 41 H 0.202 0.798 42 H 0.134 0.866 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.366 0.634 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 -19.819 7.770 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.081 3.919 5 H 0.068 0.932 6 C -0.177 4.177 7 C 0.002 3.998 8 N -0.362 5.362 9 C 0.382 3.618 10 O -0.412 6.412 11 C -0.236 4.236 12 C -0.065 4.065 13 N -0.136 5.136 14 C 0.020 3.980 15 C -0.186 4.186 16 C -0.173 4.173 17 C -0.184 4.184 18 N -0.047 5.047 19 N -0.080 5.080 20 N -0.375 5.375 21 C -0.451 4.451 22 H 0.084 0.916 23 C -0.244 4.244 24 N -0.591 5.591 25 Si 0.906 3.094 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.239 0.761 41 H 0.219 0.781 42 H 0.152 0.848 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.226 -19.277 7.691 24.611 hybrid contribution -1.219 -0.700 0.016 1.406 sum -14.445 -19.977 7.708 25.829 Atomic orbital electron populations 1.21937 0.97023 1.00718 1.00786 1.21757 0.93391 0.97780 1.00283 1.21821 1.04279 0.94750 0.98787 1.20119 0.85412 0.91018 0.95372 0.93166 1.22159 1.00851 0.98155 0.96500 1.21477 1.01022 0.78964 0.98373 1.45902 1.56881 1.13536 1.19864 1.16753 0.79419 0.82472 0.83184 1.90842 1.40905 1.74695 1.34766 1.21572 1.09801 0.98087 0.94091 1.23243 0.96817 0.85420 1.01051 1.50555 1.37402 1.10687 1.14961 1.23448 1.01813 0.81441 0.91314 1.23516 1.01936 0.99735 0.93430 1.22742 1.01916 0.96924 0.95761 1.23455 0.97149 0.99843 0.97986 1.81966 1.19135 1.09674 0.93958 1.74631 1.09419 1.01017 1.22934 1.42460 0.99627 1.20767 1.74619 1.19978 0.91557 0.97128 1.36466 0.91606 1.25658 0.93442 1.03779 1.01513 1.70872 1.37312 1.07091 1.43804 0.83310 0.76356 0.74203 0.75522 1.21212 1.22379 1.22352 0.93246 0.93776 0.93138 0.92365 0.89494 0.95256 0.94112 0.91232 0.91667 0.89904 0.91536 0.76104 0.78095 0.84837 0.88440 0.89269 0.89005 0.89639 0.89579 0.88870 0.80076 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.85 37.16 0.33 -1.76 16 2 C -0.11 -1.95 2.69 -90.62 -0.24 -2.19 16 3 C -0.14 -2.64 8.26 37.16 0.31 -2.33 16 4 C 0.19 3.66 2.02 -67.93 -0.14 3.53 16 5 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 6 C -0.14 -2.18 4.65 -26.73 -0.12 -2.31 16 7 C 0.12 2.13 5.56 -4.05 -0.02 2.11 16 8 N -0.71 -10.78 5.55 -61.35 -0.34 -11.12 16 9 C 0.60 9.67 7.82 -12.47 -0.10 9.57 16 10 O -0.54 -10.31 16.86 5.28 0.09 -10.22 16 11 C -0.10 -1.31 6.99 -83.55 -0.58 -1.90 16 12 C 0.09 0.96 10.49 -16.84 -0.18 0.79 16 13 N -0.35 -3.32 3.83 -53.78 -0.21 -3.53 16 14 C 0.12 0.66 5.05 -67.12 -0.34 0.32 16 15 C -0.15 -0.52 7.47 -25.83 -0.19 -0.72 16 16 C -0.14 -0.37 8.09 -25.83 -0.21 -0.58 16 17 C -0.15 -0.65 7.88 -25.92 -0.20 -0.86 16 18 N -0.07 -0.85 13.78 60.35 0.83 -0.02 16 19 N -0.21 -2.86 12.04 32.85 0.40 -2.46 16 20 N -0.73 -17.47 4.45 -53.43 -0.24 -17.71 16 21 C -0.32 -8.64 7.57 -15.06 -0.11 -8.75 16 22 H 0.07 1.76 7.40 -52.48 -0.39 1.37 16 23 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 24 N -0.95 -29.17 13.70 55.49 0.76 -28.41 16 25 Si 1.07 26.14 29.92 -169.99 -5.09 21.06 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.96 6.01 -51.93 -0.31 1.65 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.72 7.75 -51.92 -0.40 1.32 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.40 5.34 8.16 -40.82 -0.33 5.00 16 41 H 0.20 1.59 6.78 -52.49 -0.36 1.24 16 42 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.37 6.39 -51.93 -0.33 0.04 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 50 H 0.25 7.75 6.77 -40.82 -0.28 7.48 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -34.07 402.65 -7.66 -41.73 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.03 Total: 11.12 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.91 Total: -6.51 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 1.20 Total: -63.25 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.07 -7.66 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725443074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.113 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds