Wall clock time and date at job start Tue Mar 31 2020 20:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 C 1.52998 * 109.47384 * 185.00170 * 6 4 2 8 8 N 1.46493 * 109.47105 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99920 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99838 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.00044 * 180.02562 * 9 8 7 12 12 C 1.36590 * 125.76982 * 179.97438 * 11 9 8 13 13 N 1.34814 * 106.84008 * 179.97438 * 12 11 9 14 14 C 1.46500 * 126.59877 * 179.97438 * 13 12 11 15 15 C 1.53777 * 113.61073 * 14.14493 * 14 13 12 16 16 C 1.53955 * 87.01986 * 220.04599 * 15 14 13 17 17 C 1.53773 * 87.11125 * 25.36410 * 16 15 14 18 18 N 1.40211 * 106.81150 * 0.02562 * 13 12 11 19 19 N 1.28769 * 108.36487 * 359.74393 * 18 13 12 20 20 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 30 30 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 31 31 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 33 33 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 35 35 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 36 36 H 1.08997 * 109.46795 * 304.99831 * 6 4 2 37 37 H 1.08999 * 109.47341 * 64.99651 * 6 4 2 38 38 H 1.09011 * 109.46808 * 299.99793 * 7 6 4 39 39 H 1.08999 * 109.47306 * 59.99458 * 7 6 4 40 40 H 0.97002 * 120.00686 * 359.97438 * 8 7 6 41 41 H 1.08001 * 126.58132 * 359.97438 * 12 11 9 42 42 H 1.08998 * 112.85000 * 145.33460 * 14 13 12 43 43 H 1.09000 * 113.61580 * 334.56393 * 15 14 13 44 44 H 1.08999 * 113.61706 * 105.46386 * 15 14 13 45 45 H 1.09001 * 113.53498 * 270.80767 * 16 15 14 46 46 H 1.09000 * 113.74368 * 139.94649 * 16 15 14 47 47 H 1.09003 * 113.61541 * 220.09276 * 17 16 15 48 48 H 1.09000 * 113.61617 * 89.18633 * 17 16 15 49 49 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 50 50 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 6 1.9347 -2.8478 2.5565 8 7 1.4470 -4.2292 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3106 -4.6044 4.5680 11 6 1.1973 -6.4204 3.6133 12 6 1.3737 -7.3297 4.6172 13 7 0.7746 -8.4704 4.2207 14 6 0.7039 -9.7265 4.9714 15 6 1.0873 -9.5806 6.4535 16 6 1.8216 -10.9264 6.3130 17 6 1.9530 -10.6096 4.8140 18 7 0.2332 -8.2241 2.9510 19 7 0.4967 -7.0059 2.6270 20 7 3.5050 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2015 2.1466 23 6 5.5773 0.3549 1.7508 24 7 6.2358 -0.6800 1.2736 25 14 6.5107 1.8210 2.4355 26 1 7.9708 1.5730 2.3266 27 1 6.1563 3.0384 1.6624 28 1 6.1470 2.0171 3.8618 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4438 -2.1651 1.1596 37 1 1.9646 -2.7028 0.4074 38 1 3.0212 -2.8465 2.6461 39 1 1.5001 -2.3088 3.3984 40 1 0.9506 -4.5682 1.7949 41 1 1.8934 -7.1661 5.5497 42 1 -0.2322 -10.2619 4.8133 43 1 1.7516 -8.7395 6.6519 44 1 0.2341 -9.6163 7.1308 45 1 1.1910 -11.7903 6.5231 46 1 2.7766 -10.9621 6.8371 47 1 1.7976 -11.4748 4.1695 48 1 2.8544 -10.0502 4.5633 49 1 3.9903 -1.4819 0.8944 50 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725443074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:53 Heat of formation + Delta-G solvation = 55.690327 kcal Electronic energy + Delta-G solvation = -28537.456340 eV Core-core repulsion = 24601.543365 eV Total energy + Delta-G solvation = -3935.912975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.05 seconds Orbital eigenvalues (eV) -43.39041 -40.63709 -39.72267 -39.04871 -36.15158 -35.20810 -34.22894 -32.81317 -32.04148 -30.87821 -27.89110 -27.23613 -26.84868 -26.56620 -25.12392 -24.20118 -23.37245 -22.57225 -21.68345 -20.73287 -20.55377 -19.47177 -19.30288 -17.53063 -17.28397 -17.18563 -16.71401 -16.47897 -16.36050 -15.89304 -15.78150 -15.51066 -15.44696 -15.05845 -14.63730 -14.37815 -14.14144 -13.79999 -13.63661 -13.54154 -13.32536 -13.11616 -12.95407 -12.89149 -12.79213 -12.62356 -12.51962 -12.09878 -12.00530 -11.93897 -11.88114 -11.82964 -11.54038 -11.51062 -11.43904 -11.31418 -11.17360 -11.08500 -10.75493 -10.50259 -10.11356 -8.98463 -8.26006 -5.18213 0.04609 0.52603 0.99755 1.58649 1.68502 1.83601 2.03572 2.15071 2.76377 3.02742 3.10070 3.35225 3.49404 3.57705 3.71365 3.73155 3.77124 3.83756 3.85427 4.09139 4.09873 4.19329 4.34078 4.40854 4.44462 4.56290 4.61242 4.63729 4.72230 4.73196 4.74999 4.87923 4.91128 4.91906 4.97787 5.03891 5.07887 5.16113 5.18805 5.24863 5.29869 5.35066 5.39416 5.47300 5.63794 5.70936 5.77471 6.35010 6.60517 6.82568 7.06420 7.20662 8.11258 8.22981 9.25647 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.002251 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.186911 B =12434.213920 C =13880.976733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.186 3.814 5 H 0.041 0.959 6 C -0.123 4.123 7 C 0.136 3.864 8 N -0.702 5.702 9 C 0.598 3.402 10 O -0.574 6.574 11 C -0.121 4.121 12 C 0.106 3.894 13 N -0.335 5.335 14 C 0.105 3.895 15 C -0.144 4.144 16 C -0.123 4.123 17 C -0.148 4.148 18 N -0.085 5.085 19 N -0.222 5.222 20 N -0.742 5.742 21 C -0.299 4.299 22 H 0.067 0.933 23 C -0.112 4.112 24 N -0.983 5.983 25 Si 1.117 2.883 26 H -0.298 1.298 27 H -0.278 1.278 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.416 0.584 41 H 0.227 0.773 42 H 0.150 0.850 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.357 0.643 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 -20.828 8.485 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.193 4.193 4 C 0.077 3.923 5 H 0.059 0.941 6 C -0.161 4.161 7 C 0.013 3.987 8 N -0.353 5.353 9 C 0.383 3.617 10 O -0.453 6.453 11 C -0.260 4.260 12 C -0.052 4.052 13 N -0.119 5.119 14 C 0.005 3.995 15 C -0.182 4.182 16 C -0.161 4.161 17 C -0.187 4.187 18 N -0.064 5.064 19 N -0.095 5.095 20 N -0.384 5.384 21 C -0.430 4.430 22 H 0.085 0.915 23 C -0.303 4.303 24 N -0.633 5.633 25 Si 0.944 3.056 26 H -0.225 1.225 27 H -0.204 1.204 28 H -0.209 1.209 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.243 0.757 42 H 0.168 0.832 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.189 0.811 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.716 -20.313 8.381 27.016 hybrid contribution -0.576 -0.489 -0.171 0.775 sum -16.292 -20.802 8.210 27.669 Atomic orbital electron populations 1.21853 0.93584 1.02358 1.01835 1.21633 0.96165 0.96325 0.98590 1.21742 1.01473 0.96168 0.99941 1.20359 0.82743 0.93351 0.95850 0.94140 1.22029 1.02769 0.95649 0.95659 1.21162 0.98373 0.80241 0.98945 1.45750 1.56624 1.12694 1.20231 1.17080 0.78619 0.83411 0.82579 1.90812 1.42681 1.75699 1.36100 1.21325 1.11710 0.97377 0.95636 1.23578 0.95686 0.84945 1.00990 1.50874 1.35619 1.11468 1.13973 1.24078 1.03106 0.80089 0.92183 1.23566 1.02505 1.00175 0.91971 1.22740 1.02352 0.97039 0.93961 1.23473 0.95895 0.99586 0.99711 1.81876 1.19840 1.09182 0.95538 1.74591 1.09917 1.01594 1.23435 1.42644 1.01721 1.19629 1.74375 1.20225 0.91645 0.97342 1.33827 0.91498 1.26890 0.95155 1.05479 1.02765 1.70977 1.37517 1.07932 1.46874 0.82742 0.74565 0.72414 0.75888 1.22466 1.20426 1.20903 0.92733 0.92243 0.91233 0.93072 0.93665 0.93059 0.94000 0.87701 0.91321 0.94123 0.92302 0.74745 0.75689 0.83237 0.88657 0.87806 0.87266 0.89220 0.89003 0.90347 0.81142 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.85 71.98 0.64 -2.82 16 2 C -0.11 -3.56 2.69 -10.79 -0.03 -3.59 16 3 C -0.14 -5.02 8.26 71.98 0.59 -4.42 16 4 C 0.19 7.03 2.02 44.99 0.09 7.13 16 5 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 6 C -0.12 -3.76 4.65 30.59 0.14 -3.62 16 7 C 0.14 4.76 5.56 86.38 0.48 5.24 16 8 N -0.70 -21.37 5.55 -466.27 -2.59 -23.96 16 9 C 0.60 19.63 7.82 86.69 0.68 20.31 16 10 O -0.57 -22.70 16.86 -4.01 -0.07 -22.77 16 11 C -0.12 -3.27 6.99 40.82 0.29 -2.99 16 12 C 0.11 2.14 10.49 83.85 0.88 3.02 16 13 N -0.34 -5.89 3.83 -324.05 -1.24 -7.13 16 14 C 0.10 0.92 5.05 45.52 0.23 1.15 16 15 C -0.14 -0.64 7.47 31.18 0.23 -0.41 16 16 C -0.12 -0.33 8.09 31.18 0.25 -0.08 16 17 C -0.15 -1.06 7.88 31.12 0.25 -0.82 16 18 N -0.08 -2.06 13.78 37.02 0.51 -1.55 16 19 N -0.22 -6.07 12.04 -50.00 -0.60 -6.67 16 20 N -0.74 -36.34 4.45 -322.95 -1.44 -37.78 16 21 C -0.30 -16.44 7.57 84.03 0.64 -15.81 16 22 H 0.07 3.62 7.40 -2.91 -0.02 3.59 16 23 C -0.11 -6.60 5.50 84.86 0.47 -6.14 16 24 N -0.98 -62.96 13.70 21.65 0.30 -62.67 16 25 Si 1.12 53.69 29.92 68.60 2.05 55.74 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.48 6.32 -2.39 -0.02 1.47 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 2.04 6.01 -2.39 -0.01 2.02 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 2.52 6.17 -2.39 -0.01 2.50 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.77 7.75 -2.38 -0.02 1.75 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.42 10.72 8.16 -92.71 -0.76 9.96 16 41 H 0.23 3.26 6.78 -2.91 -0.02 3.24 16 42 H 0.15 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.50 6.39 -2.39 -0.02 0.48 16 44 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.36 18.72 6.63 -92.71 -0.61 18.10 16 50 H 0.24 15.48 6.77 -92.71 -0.63 14.85 16 Total: -1.00 -77.17 402.65 2.48 -74.69 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.27 Total: 35.97 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.82 Total: -3.87 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -5.06 Total: -139.75 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 53.69 SS G_CDS: 2.05 Total: 55.74 kcal Total: -77.17 2.48 -74.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725443074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.382 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.05 seconds