Wall clock time and date at job start Tue Mar 31 2020 20:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 6 6 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 7 7 C 1.53000 * 109.47060 * 300.00449 * 5 2 1 8 8 N 1.46507 * 109.46803 * 175.00213 * 7 5 2 9 9 C 1.36934 * 119.99498 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00844 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99803 * 179.97438 * 9 8 7 12 12 N 1.31626 * 119.99884 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00444 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46641 * 60.00015 * 13 11 9 15 15 H 1.48493 * 109.47567 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47117 * 300.00600 * 13 11 9 17 17 N 1.46500 * 109.47007 * 60.00219 * 5 2 1 18 18 C 1.34777 * 120.00075 * 84.99755 * 17 5 2 19 19 O 1.21287 * 119.99865 * 0.02562 * 18 17 5 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 5 21 21 H 1.08996 * 109.68907 * 299.45369 * 20 18 17 22 22 C 1.53437 * 109.69405 * 178.86810 * 20 18 17 23 23 C 1.53114 * 109.55183 * 190.57309 * 22 20 18 24 24 C 1.53421 * 109.57277 * 70.06921 * 23 22 20 25 25 C 1.50597 * 108.33747 * 310.18017 * 24 23 22 26 26 N 1.32899 * 129.16431 * 196.63088 * 25 24 23 27 27 N 1.29018 * 108.63868 * 179.77797 * 26 25 24 28 28 N 1.29110 * 110.25641 * 0.02562 * 27 26 25 29 29 H 0.96997 * 126.00317 * 180.08127 * 28 27 26 30 30 C 1.34397 * 107.98696 * 0.06055 * 28 27 26 31 31 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 33 33 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 36 36 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 37 37 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 38 38 H 1.08996 * 109.47747 * 59.99547 * 4 2 1 39 39 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 40 40 H 1.09008 * 109.47142 * 294.99397 * 7 5 2 41 41 H 1.08990 * 109.47170 * 54.99895 * 7 5 2 42 42 H 0.96994 * 119.99737 * 359.97438 * 8 7 5 43 43 H 0.96998 * 119.99867 * 179.97438 * 12 11 9 44 44 H 0.96997 * 120.00274 * 264.99726 * 17 5 2 45 45 H 1.08996 * 109.45817 * 310.60761 * 22 20 18 46 46 H 1.09009 * 109.45280 * 70.54943 * 22 20 18 47 47 H 1.09003 * 109.45418 * 310.03752 * 23 22 20 48 48 H 1.09000 * 109.45135 * 190.10222 * 23 22 20 49 49 H 1.09005 * 109.68923 * 190.46960 * 24 23 22 50 50 H 1.08996 * 109.72418 * 69.91530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0401 -0.7212 1.2492 6 1 3.1301 -0.7208 1.2495 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7567 3.6916 9 6 1.5689 -0.3005 4.9348 10 1 1.0078 0.6167 5.0358 11 6 1.9357 -1.0177 6.0653 12 7 2.6192 -2.1359 5.9423 13 14 1.4595 -0.3959 7.7612 14 1 -0.0196 -0.3056 7.8579 15 1 1.9671 -1.3351 8.7934 16 1 2.0528 0.9476 7.9804 17 7 1.5518 -2.1025 1.2492 18 6 2.2286 -3.0565 0.5797 19 8 3.2421 -2.7716 -0.0224 20 6 1.7266 -4.4774 0.5801 21 1 1.6981 -4.8565 1.6016 22 6 2.6542 -5.3537 -0.2719 23 6 2.0080 -6.7249 -0.4879 24 6 0.8002 -6.5823 -1.4231 25 6 -0.0658 -5.4617 -0.9110 26 7 -1.3299 -5.1761 -1.2056 27 7 -1.6831 -4.1310 -0.5366 28 7 -0.7013 -3.7124 0.1899 29 1 -0.7173 -2.9445 0.7824 30 6 0.3464 -4.5278 -0.0186 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7488 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1301 -0.7207 -1.2494 40 1 1.9646 0.9986 2.5445 41 1 0.4437 0.0781 2.4548 42 1 2.4212 -1.5806 3.6009 43 1 2.8758 -2.6368 6.7323 44 1 0.7414 -2.3304 1.7310 45 1 2.8211 -4.8748 -1.2366 46 1 3.6080 -5.4785 0.2411 47 1 1.6795 -7.1265 0.4708 48 1 2.7354 -7.4026 -0.9349 49 1 0.2309 -7.5118 -1.4320 50 1 1.1415 -6.3512 -2.4321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725787849.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:07 Heat of formation + Delta-G solvation = 52.128693 kcal Electronic energy + Delta-G solvation = -31347.678101 eV Core-core repulsion = 27411.610682 eV Total energy + Delta-G solvation = -3936.067419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.65382 -40.39305 -38.09002 -36.59897 -34.60685 -34.23202 -33.21338 -31.25585 -30.60418 -30.24150 -27.89407 -27.31929 -26.87881 -24.89365 -23.88222 -23.21797 -22.73096 -21.59075 -20.95987 -19.70522 -18.75253 -18.36849 -17.37777 -17.00530 -16.37241 -15.91397 -15.75401 -15.19824 -14.74692 -14.39913 -14.15918 -14.09959 -13.89202 -13.83438 -13.73373 -13.26194 -13.22784 -12.81034 -12.40923 -12.34606 -12.07046 -11.94674 -11.72071 -11.55771 -11.51293 -11.45650 -11.33786 -11.22148 -11.21626 -10.89124 -10.86996 -10.79805 -10.67239 -10.47790 -10.36139 -10.08489 -9.85713 -9.83397 -9.02499 -8.97871 -8.84396 -7.07938 -5.89600 -3.19777 1.36507 2.34735 2.42884 2.68733 3.18510 3.35383 3.40691 3.41276 4.06419 4.24906 4.44660 4.48569 4.59938 4.70219 4.79374 4.89171 4.97408 5.07280 5.10891 5.15983 5.22603 5.39424 5.41614 5.42430 5.56178 5.64163 5.68390 5.72845 5.76313 5.78789 5.83595 5.87150 5.88269 5.93451 5.97707 6.03494 6.08193 6.14281 6.15023 6.29363 6.32538 6.33320 6.48441 6.57104 6.61993 6.75510 7.50068 7.57107 8.21073 8.28311 8.30724 9.40392 9.94496 10.29846 11.32504 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.004121 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.144442 B = 6792.102383 C = 7864.838459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.129 4.129 5 C 0.148 3.852 6 H 0.092 0.908 7 C 0.140 3.860 8 N -0.731 5.731 9 C -0.246 4.246 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.931 5.931 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.285 1.285 17 N -0.713 5.713 18 C 0.520 3.480 19 O -0.521 6.521 20 C -0.037 4.037 21 H 0.123 0.877 22 C -0.095 4.095 23 C -0.121 4.121 24 C -0.034 4.034 25 C -0.008 4.008 26 N -0.259 5.259 27 N -0.082 5.082 28 N -0.378 5.378 29 H 0.445 0.555 30 C -0.005 4.005 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.385 0.615 43 H 0.257 0.743 44 H 0.392 0.608 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -4.725 -15.024 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.187 4.187 5 C 0.043 3.957 6 H 0.110 0.890 7 C 0.012 3.988 8 N -0.376 5.376 9 C -0.377 4.377 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 N -0.364 5.364 18 C 0.305 3.695 19 O -0.397 6.397 20 C -0.060 4.060 21 H 0.141 0.859 22 C -0.133 4.133 23 C -0.159 4.159 24 C -0.073 4.073 25 C -0.148 4.148 26 N -0.125 5.125 27 N -0.061 5.061 28 N -0.099 5.099 29 H 0.292 0.708 30 C -0.141 4.141 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.226 0.774 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.957 -4.273 -15.819 16.650 hybrid contribution 0.430 0.440 2.151 2.237 sum -2.527 -3.833 -13.668 14.418 Atomic orbital electron populations 1.21928 0.94902 1.00716 1.02231 1.20908 0.95591 0.95946 0.95366 1.21875 1.01303 0.94675 1.01943 1.21884 1.01757 0.99396 0.95643 1.21368 1.00175 0.79569 0.94546 0.89034 1.21117 0.97344 0.94939 0.85360 1.42341 1.67081 1.27706 1.00479 1.19148 1.29333 1.05648 0.83542 0.91192 1.24739 1.00631 0.97313 0.97871 1.69645 1.43028 1.16437 1.28779 0.86274 0.77989 0.77834 0.84095 1.21241 1.21640 1.21194 1.46083 1.28788 1.09186 1.52327 1.20181 0.84293 0.86226 0.78843 1.90711 1.24218 1.81955 1.42798 1.20128 0.88475 0.94924 1.02499 0.85903 1.21449 0.97461 0.93801 1.00617 1.21691 0.96787 0.97153 1.00227 1.20012 0.93662 0.94356 0.99291 1.21691 0.92902 1.00246 0.99971 1.74824 1.11737 1.07503 1.18423 1.78587 1.12186 1.09488 1.05852 1.44926 1.08703 1.23909 1.32368 0.70769 1.21507 0.92459 0.95867 1.04246 0.91516 0.92721 0.94157 0.92406 0.92764 0.91784 0.93274 0.93865 0.91773 0.94423 0.95493 0.78096 0.93359 0.77376 0.90087 0.89557 0.91062 0.90012 0.89612 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.97 37.16 0.30 -1.33 16 2 C -0.08 -0.96 0.62 -154.51 -0.10 -1.06 16 3 C -0.14 -1.65 8.12 37.16 0.30 -1.35 16 4 C -0.13 -1.71 7.00 37.15 0.26 -1.45 16 5 C 0.15 2.21 1.69 -67.93 -0.11 2.10 16 6 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 7 C 0.14 2.47 5.10 -4.04 -0.02 2.45 16 8 N -0.73 -16.74 5.43 -59.90 -0.33 -17.06 16 9 C -0.25 -6.41 9.99 -15.06 -0.15 -6.56 16 10 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 13 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 N -0.71 -9.86 3.21 -53.81 -0.17 -10.03 16 18 C 0.52 7.25 5.50 -10.99 -0.06 7.19 16 19 O -0.52 -8.48 12.97 5.55 0.07 -8.41 16 20 C -0.04 -0.42 2.91 -92.78 -0.27 -0.69 16 21 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 22 C -0.09 -0.94 4.66 -26.45 -0.12 -1.06 16 23 C -0.12 -0.94 5.90 -26.45 -0.16 -1.09 16 24 C -0.03 -0.30 6.30 -27.71 -0.17 -0.48 16 25 C -0.01 -0.10 7.11 -83.13 -0.59 -0.69 16 26 N -0.26 -3.76 12.40 33.16 0.41 -3.35 16 27 N -0.08 -1.18 13.40 60.35 0.81 -0.37 16 28 N -0.38 -4.63 6.76 33.39 0.23 -4.40 16 29 H 0.44 4.81 5.69 -190.08 -1.08 3.73 16 30 C 0.00 -0.06 6.38 -82.50 -0.53 -0.58 16 31 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.45 6.48 -51.93 -0.34 0.12 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 37 H 0.05 0.70 5.78 -51.93 -0.30 0.40 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 40 H 0.04 0.68 6.71 -51.92 -0.35 0.34 16 41 H 0.03 0.46 6.17 -51.93 -0.32 0.14 16 42 H 0.38 9.41 7.33 -40.82 -0.30 9.12 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 44 H 0.39 5.18 6.64 -40.82 -0.27 4.90 16 45 H 0.08 0.88 7.75 -51.93 -0.40 0.47 16 46 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 47 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -31.06 380.89 -7.65 -38.70 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -8.58 Total: 13.63 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -1.52 Total: -4.95 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 1.67 Total: -61.17 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.06 -7.65 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725787849.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.831 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds