Wall clock time and date at job start Tue Mar 31 2020 20:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47357 * 2 1 4 4 N 1.30298 * 126.35084 * 89.97363 * 3 2 1 5 5 N 1.28530 * 110.05693 * 180.02562 * 4 3 2 6 6 C 1.31211 * 109.85850 * 0.02562 * 5 4 3 7 7 N 1.38586 * 126.47195 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00387 * 254.65442 * 7 6 5 9 9 C 1.46896 * 110.99876 * 18.61317 * 7 6 5 10 10 H 1.09005 * 109.47179 * 300.28063 * 9 7 6 11 11 C 1.52998 * 109.47253 * 60.28112 * 9 7 6 12 12 C 1.50700 * 109.47199 * 180.27974 * 9 7 6 13 13 H 1.08002 * 120.00010 * 359.97438 * 12 9 7 14 14 C 1.37875 * 119.99940 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00104 * 0.02562 * 14 12 9 16 16 Si 1.86810 * 119.99755 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46985 * 60.00274 * 16 14 12 18 18 H 1.48505 * 109.46942 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46994 * 300.00127 * 16 14 12 20 20 N 1.36458 * 107.05659 * 0.22333 * 6 5 4 21 21 C 1.46497 * 127.13745 * 179.77206 * 20 6 5 22 22 C 1.53002 * 109.47010 * 89.17863 * 21 20 6 23 23 C 1.53004 * 112.58813 * 73.88409 * 22 21 20 24 24 C 1.53209 * 113.27381 * 204.25770 * 22 21 20 25 25 N 1.46758 * 83.88369 * 115.00858 * 24 22 21 26 26 C 1.46499 * 130.88130 * 180.02562 * 25 24 22 27 27 C 1.35083 * 98.23269 * 0.02562 * 25 24 22 28 28 O 1.21279 * 135.56824 * 180.02562 * 27 25 24 29 29 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47241 * 300.00317 * 1 2 3 31 31 H 1.08995 * 109.47040 * 59.99712 * 1 2 3 32 32 H 1.08999 * 109.47621 * 239.99808 * 2 1 3 33 33 H 1.08999 * 109.47230 * 119.99812 * 2 1 3 34 34 H 1.08999 * 109.47280 * 191.21033 * 8 7 6 35 35 H 1.09003 * 109.47232 * 311.21115 * 8 7 6 36 36 H 1.08997 * 109.46404 * 71.20936 * 8 7 6 37 37 H 1.09001 * 109.47089 * 181.56300 * 11 9 7 38 38 H 1.08995 * 109.47345 * 61.56051 * 11 9 7 39 39 H 1.09008 * 109.47220 * 301.55596 * 11 9 7 40 40 H 0.97004 * 119.99757 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47301 * 209.18248 * 21 20 6 42 42 H 1.09003 * 109.47308 * 329.18239 * 21 20 6 43 43 H 1.09003 * 109.47067 * 59.99922 * 23 22 21 44 44 H 1.08998 * 109.47238 * 180.02562 * 23 22 21 45 45 H 1.09008 * 109.46938 * 300.00192 * 23 22 21 46 46 H 1.08998 * 114.12431 * 228.74110 * 24 22 21 47 47 H 1.09004 * 114.12145 * 1.28695 * 24 22 21 48 48 H 1.09000 * 109.46896 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47435 * 299.97749 * 26 25 24 50 50 H 1.09002 * 109.47120 * 59.97842 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1491 1.0494 5 7 2.7003 3.3123 0.6888 6 6 2.7272 3.3893 -0.6208 7 7 3.1141 4.4866 -1.3737 8 6 1.9484 5.1576 -1.9641 9 6 3.9091 5.4235 -0.5686 10 1 3.3164 5.7676 0.2791 11 6 5.1669 4.7175 -0.0585 12 6 4.3050 6.6043 -1.4171 13 1 3.9972 6.6536 -2.4512 14 6 5.0600 7.6217 -0.8733 15 7 5.4352 7.5614 0.3857 16 14 5.5514 9.0851 -1.9254 17 1 4.3308 9.7700 -2.4215 18 1 6.3549 10.0323 -1.1114 19 1 6.3595 8.6159 -3.0795 20 7 2.2968 2.1869 -1.1013 21 6 2.1515 1.7965 -2.5059 22 6 3.4663 1.1954 -3.0067 23 6 3.7151 -0.2118 -2.4600 24 6 3.6393 1.2983 -4.5255 25 7 4.7611 2.1793 -4.1804 26 6 5.7102 2.9014 -5.0313 27 6 4.6480 2.1186 -2.8356 28 8 5.2414 2.6005 -1.8940 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2837 5.8854 -2.7030 35 1 1.3092 4.4181 -2.4466 36 1 1.3872 5.6671 -1.1809 37 1 5.7428 5.4044 0.5618 38 1 5.7732 4.3979 -0.9059 39 1 4.8809 3.8473 0.5325 40 1 5.9668 8.2771 0.7682 41 1 1.3559 1.0571 -2.5971 42 1 1.9024 2.6738 -3.1029 43 1 2.9051 -0.8712 -2.7720 44 1 4.6614 -0.5899 -2.8470 45 1 3.7562 -0.1767 -1.3713 46 1 3.9364 0.3653 -5.0043 47 1 2.8174 1.8022 -5.0343 48 1 6.4079 3.4583 -4.4059 49 1 6.2614 2.1898 -5.6459 50 1 5.1673 3.5935 -5.6751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001727498458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:18 Heat of formation + Delta-G solvation = 101.872137 kcal Electronic energy + Delta-G solvation = -32326.043258 eV Core-core repulsion = 28392.132877 eV Total energy + Delta-G solvation = -3933.910381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.49830 -40.86160 -37.00768 -36.43050 -35.17995 -33.66768 -32.67160 -32.04319 -29.07052 -28.63975 -28.36344 -27.27415 -25.44006 -25.20758 -24.24869 -23.65547 -22.22053 -21.57790 -20.17388 -19.26332 -17.99655 -17.22792 -16.61875 -16.23605 -16.04646 -15.79113 -15.49997 -15.11018 -14.57013 -14.56821 -14.05592 -13.80346 -13.74370 -13.40235 -13.27743 -13.10446 -12.89546 -12.56469 -12.50788 -12.41291 -12.21346 -12.02283 -11.89758 -11.75155 -11.68859 -11.30875 -11.14026 -10.97029 -10.82749 -10.81237 -10.52970 -10.15918 -9.99747 -9.87341 -9.76144 -9.57843 -9.28631 -9.06699 -8.61285 -8.43363 -8.29653 -7.26042 -5.92346 -3.99039 2.33290 2.69337 2.85340 3.05698 3.33667 3.38728 3.39929 3.57619 3.95928 4.24185 4.41494 4.43209 4.56051 4.59382 4.75031 4.88049 4.94360 5.10273 5.16888 5.21875 5.27307 5.35525 5.38626 5.41869 5.46511 5.52720 5.63368 5.64989 5.68894 5.74132 5.84562 5.91596 6.06608 6.08824 6.20522 6.34080 6.46705 6.57652 6.66566 6.80616 7.06400 7.28440 7.40004 7.54603 7.68952 7.87074 7.91343 8.22231 8.41284 8.62324 8.67284 9.02130 9.51706 9.64156 11.13896 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.005201 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.871193 B = 5382.123103 C = 6780.231005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.149 3.851 4 N -0.286 5.286 5 N -0.319 5.319 6 C 0.404 3.596 7 N -0.455 5.455 8 C 0.044 3.956 9 C 0.235 3.765 10 H 0.018 0.982 11 C -0.123 4.123 12 C -0.511 4.511 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.483 5.483 21 C 0.139 3.861 22 C -0.149 4.149 23 C -0.132 4.132 24 C 0.125 3.875 25 N -0.640 5.640 26 C 0.089 3.911 27 C 0.543 3.457 28 O -0.437 6.437 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.051 0.949 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -18.114 -12.915 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.118 4.118 4 N -0.125 5.125 5 N -0.162 5.162 6 C 0.049 3.951 7 N -0.180 5.180 8 C -0.103 4.103 9 C 0.131 3.869 10 H 0.036 0.964 11 C -0.182 4.182 12 C -0.549 4.549 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.204 1.204 20 N -0.180 5.180 21 C 0.014 3.986 22 C -0.154 4.154 23 C -0.189 4.189 24 C 0.002 3.998 25 N -0.380 5.380 26 C -0.053 4.053 27 C 0.325 3.675 28 O -0.302 6.302 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.070 0.930 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.239 -17.311 -11.224 21.864 hybrid contribution -0.085 0.857 -1.703 1.909 sum -7.324 -16.454 -12.927 22.169 Atomic orbital electron populations 1.21749 0.94270 1.01849 1.02548 1.19975 0.96078 0.87199 1.04011 1.24397 1.07258 0.97299 0.82875 1.73920 1.14666 0.99603 1.24298 1.74802 1.21364 1.12129 1.07883 1.22945 0.95537 0.87585 0.89055 1.59159 1.18192 1.07214 1.33446 1.22261 0.90584 0.97717 0.99758 1.19294 0.90049 0.86987 0.90578 0.96435 1.21734 0.98663 0.97903 0.99851 1.20986 1.33936 1.02929 0.97097 0.92286 1.24876 0.95838 0.98147 0.94983 1.69940 1.36978 1.32897 1.12274 0.86601 0.78486 0.82284 0.80180 1.20391 1.21289 1.20399 1.46073 1.53165 1.11793 1.06956 1.21524 0.95697 1.01436 0.79948 1.23369 0.97127 0.98561 0.96343 1.21709 1.02379 0.92459 1.02366 1.22749 0.88885 0.94105 0.94040 1.50655 1.31847 1.48892 1.06634 1.21544 0.92757 0.95916 0.95059 1.21049 0.83899 0.80160 0.82359 1.90933 1.53345 1.48945 1.37010 0.91817 0.91827 0.93029 0.90272 0.88811 0.89410 0.94320 0.94800 0.90526 0.93916 0.96185 0.92872 0.88376 0.88259 0.91102 0.91618 0.91058 0.89160 0.89379 0.90185 0.93009 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.94 16 2 C -0.03 -0.35 5.71 -27.89 -0.16 -0.51 16 3 C 0.15 2.47 6.74 -154.01 -1.04 1.43 16 4 N -0.29 -6.16 12.18 32.99 0.40 -5.75 16 5 N -0.32 -7.82 9.92 30.32 0.30 -7.52 16 6 C 0.40 8.78 4.46 -318.87 -1.42 7.36 16 7 N -0.45 -10.32 3.80 -176.08 -0.67 -10.99 16 8 C 0.04 0.87 8.95 60.06 0.54 1.40 16 9 C 0.23 6.42 1.71 -68.87 -0.12 6.31 16 10 H 0.02 0.55 7.92 -51.93 -0.41 0.14 16 11 C -0.12 -3.52 7.78 37.16 0.29 -3.23 16 12 C -0.51 -14.30 7.99 -34.44 -0.28 -14.57 16 13 H 0.06 1.59 6.41 -52.49 -0.34 1.26 16 14 C 0.06 1.82 5.30 -17.82 -0.09 1.72 16 15 N -0.88 -26.47 11.34 55.43 0.63 -25.84 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.48 -8.04 2.59 -114.08 -0.30 -8.33 16 21 C 0.14 1.60 5.17 -4.04 -0.02 1.58 16 22 C -0.15 -1.65 1.08 -156.59 -0.17 -1.82 16 23 C -0.13 -1.20 7.73 37.16 0.29 -0.91 16 24 C 0.13 1.03 8.49 -3.79 -0.03 0.99 16 25 N -0.64 -8.22 3.61 -213.74 -0.77 -8.99 16 26 C 0.09 1.05 11.66 59.85 0.70 1.74 16 27 C 0.54 8.98 7.82 -10.73 -0.08 8.90 16 28 O -0.44 -9.71 13.11 5.56 0.07 -9.63 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.65 5.27 -51.93 -0.27 0.38 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.71 6.51 -51.93 -0.34 1.37 16 35 H 0.04 0.61 6.39 -51.93 -0.33 0.28 16 36 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.08 2.36 6.11 -51.93 -0.32 2.04 16 38 H 0.04 1.23 6.09 -51.93 -0.32 0.92 16 39 H 0.02 0.56 6.14 -51.92 -0.32 0.24 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 0.76 7.84 -51.93 -0.41 0.35 16 42 H 0.10 1.16 6.22 -51.93 -0.32 0.84 16 43 H 0.07 0.40 7.83 -51.93 -0.41 -0.01 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.82 6.24 -51.92 -0.32 0.50 16 46 H 0.09 0.51 8.01 -51.93 -0.42 0.09 16 47 H 0.09 0.56 7.91 -51.93 -0.41 0.15 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -37.55 384.31 -8.66 -46.21 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.87 Total: -1.03 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -1.23 Total: 9.45 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.41 Total: -67.43 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.55 -8.66 -46.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001727498458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.085 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds