Wall clock time and date at job start Tue Mar 31 2020 20:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47357 * 2 1 4 4 N 1.30298 * 126.35084 * 89.97363 * 3 2 1 5 5 N 1.28530 * 110.05693 * 180.02562 * 4 3 2 6 6 C 1.31211 * 109.85850 * 0.02562 * 5 4 3 7 7 N 1.38586 * 126.47195 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00387 * 254.65442 * 7 6 5 9 9 C 1.46896 * 110.99876 * 18.61317 * 7 6 5 10 10 H 1.09005 * 109.47179 * 300.28063 * 9 7 6 11 11 C 1.52998 * 109.47253 * 60.28112 * 9 7 6 12 12 C 1.50700 * 109.47199 * 180.27974 * 9 7 6 13 13 H 1.08002 * 120.00010 * 359.97438 * 12 9 7 14 14 C 1.37875 * 119.99940 * 179.97438 * 12 9 7 15 15 N 1.31513 * 120.00104 * 0.02562 * 14 12 9 16 16 Si 1.86810 * 119.99755 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46985 * 60.00274 * 16 14 12 18 18 H 1.48505 * 109.46942 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46994 * 300.00127 * 16 14 12 20 20 N 1.36458 * 107.05659 * 0.22333 * 6 5 4 21 21 C 1.46497 * 127.13745 * 179.77206 * 20 6 5 22 22 C 1.53002 * 109.47010 * 89.17863 * 21 20 6 23 23 C 1.53004 * 112.58813 * 73.88409 * 22 21 20 24 24 C 1.53209 * 113.27381 * 204.25770 * 22 21 20 25 25 N 1.46758 * 83.88369 * 115.00858 * 24 22 21 26 26 C 1.46499 * 130.88130 * 180.02562 * 25 24 22 27 27 C 1.35083 * 98.23269 * 0.02562 * 25 24 22 28 28 O 1.21279 * 135.56824 * 180.02562 * 27 25 24 29 29 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47241 * 300.00317 * 1 2 3 31 31 H 1.08995 * 109.47040 * 59.99712 * 1 2 3 32 32 H 1.08999 * 109.47621 * 239.99808 * 2 1 3 33 33 H 1.08999 * 109.47230 * 119.99812 * 2 1 3 34 34 H 1.08999 * 109.47280 * 191.21033 * 8 7 6 35 35 H 1.09003 * 109.47232 * 311.21115 * 8 7 6 36 36 H 1.08997 * 109.46404 * 71.20936 * 8 7 6 37 37 H 1.09001 * 109.47089 * 181.56300 * 11 9 7 38 38 H 1.08995 * 109.47345 * 61.56051 * 11 9 7 39 39 H 1.09008 * 109.47220 * 301.55596 * 11 9 7 40 40 H 0.97004 * 119.99757 * 179.97438 * 15 14 12 41 41 H 1.09000 * 109.47301 * 209.18248 * 21 20 6 42 42 H 1.09003 * 109.47308 * 329.18239 * 21 20 6 43 43 H 1.09003 * 109.47067 * 59.99922 * 23 22 21 44 44 H 1.08998 * 109.47238 * 180.02562 * 23 22 21 45 45 H 1.09008 * 109.46938 * 300.00192 * 23 22 21 46 46 H 1.08998 * 114.12431 * 228.74110 * 24 22 21 47 47 H 1.09004 * 114.12145 * 1.28695 * 24 22 21 48 48 H 1.09000 * 109.46896 * 179.97438 * 26 25 24 49 49 H 1.08998 * 109.47435 * 299.97749 * 26 25 24 50 50 H 1.09002 * 109.47120 * 59.97842 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1491 1.0494 5 7 2.7003 3.3123 0.6888 6 6 2.7272 3.3893 -0.6208 7 7 3.1141 4.4866 -1.3737 8 6 1.9484 5.1576 -1.9641 9 6 3.9091 5.4235 -0.5686 10 1 3.3164 5.7676 0.2791 11 6 5.1669 4.7175 -0.0585 12 6 4.3050 6.6043 -1.4171 13 1 3.9972 6.6536 -2.4512 14 6 5.0600 7.6217 -0.8733 15 7 5.4352 7.5614 0.3857 16 14 5.5514 9.0851 -1.9254 17 1 4.3308 9.7700 -2.4215 18 1 6.3549 10.0323 -1.1114 19 1 6.3595 8.6159 -3.0795 20 7 2.2968 2.1869 -1.1013 21 6 2.1515 1.7965 -2.5059 22 6 3.4663 1.1954 -3.0067 23 6 3.7151 -0.2118 -2.4600 24 6 3.6393 1.2983 -4.5255 25 7 4.7611 2.1793 -4.1804 26 6 5.7102 2.9014 -5.0313 27 6 4.6480 2.1186 -2.8356 28 8 5.2414 2.6005 -1.8940 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2837 5.8854 -2.7030 35 1 1.3092 4.4181 -2.4466 36 1 1.3872 5.6671 -1.1809 37 1 5.7428 5.4044 0.5618 38 1 5.7732 4.3979 -0.9059 39 1 4.8809 3.8473 0.5325 40 1 5.9668 8.2771 0.7682 41 1 1.3559 1.0571 -2.5971 42 1 1.9024 2.6738 -3.1029 43 1 2.9051 -0.8712 -2.7720 44 1 4.6614 -0.5899 -2.8470 45 1 3.7562 -0.1767 -1.3713 46 1 3.9364 0.3653 -5.0043 47 1 2.8174 1.8022 -5.0343 48 1 6.4079 3.4583 -4.4059 49 1 6.2614 2.1898 -5.6459 50 1 5.1673 3.5935 -5.6751 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001727498458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:17 Heat of formation + Delta-G solvation = 74.751217 kcal Electronic energy + Delta-G solvation = -32327.219309 eV Core-core repulsion = 28392.132877 eV Total energy + Delta-G solvation = -3935.086432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.92416 -41.87553 -38.82469 -37.70813 -36.36892 -35.11932 -34.26789 -33.17045 -31.18433 -30.09546 -29.21348 -28.30221 -27.36137 -26.09888 -26.07189 -24.72655 -23.62925 -23.02993 -21.40398 -21.01331 -19.07944 -18.56859 -18.06694 -17.76008 -17.27073 -17.10885 -16.93200 -16.40843 -16.35310 -15.82551 -15.48138 -15.00694 -14.87057 -14.68162 -14.42728 -14.20042 -14.18755 -13.86260 -13.78044 -13.44244 -13.36946 -13.12501 -13.06517 -12.97619 -12.86763 -12.72942 -12.57278 -12.51180 -12.34368 -12.19652 -12.05890 -12.04766 -11.99592 -11.81138 -11.36784 -11.04206 -10.93685 -10.58036 -10.44659 -10.21241 -9.56979 -9.02002 -8.12581 -6.28267 0.95256 1.37100 1.42995 1.43163 1.50907 1.70732 2.03901 2.17942 2.39315 2.93913 3.11860 3.19769 3.42119 3.56396 3.64325 3.69780 4.01453 4.08879 4.14172 4.30153 4.37286 4.41684 4.49720 4.56232 4.58757 4.61594 4.66715 4.75289 4.80000 4.84948 4.88429 4.90841 4.95768 4.96125 5.02496 5.05956 5.17087 5.21306 5.28408 5.29557 5.40815 5.48373 5.61355 5.66563 5.77891 5.87481 6.03360 6.10954 6.19071 6.68767 6.81906 7.39557 7.48061 7.99895 8.94557 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.005201 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.871193 B = 5382.123103 C = 6780.231005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.033 4.033 3 C 0.182 3.818 4 N -0.344 5.344 5 N -0.382 5.382 6 C 0.388 3.612 7 N -0.449 5.449 8 C 0.046 3.954 9 C 0.252 3.748 10 H -0.035 1.035 11 C -0.093 4.093 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.007 3.993 15 N -0.923 5.923 16 Si 0.972 3.028 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.269 1.269 20 N -0.472 5.472 21 C 0.124 3.876 22 C -0.139 4.139 23 C -0.130 4.130 24 C 0.143 3.857 25 N -0.645 5.645 26 C 0.085 3.915 27 C 0.509 3.491 28 O -0.516 6.516 29 H 0.099 0.901 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.011 0.989 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.155 0.845 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.130 0.870 47 H 0.119 0.881 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -21.138 -17.653 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.088 4.088 4 N -0.182 5.182 5 N -0.225 5.225 6 C 0.030 3.970 7 N -0.173 5.173 8 C -0.101 4.101 9 C 0.146 3.854 10 H -0.017 1.017 11 C -0.151 4.151 12 C -0.559 4.559 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.561 5.561 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.194 1.194 20 N -0.168 5.168 21 C 0.002 3.998 22 C -0.144 4.144 23 C -0.187 4.187 24 C 0.022 3.978 25 N -0.383 5.383 26 C -0.056 4.056 27 C 0.295 3.705 28 O -0.388 6.388 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.172 0.828 42 H 0.120 0.880 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.148 0.852 47 H 0.137 0.863 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.756 -20.391 -16.048 27.722 hybrid contribution 0.655 1.615 -0.272 1.764 sum -9.101 -18.776 -16.321 26.490 Atomic orbital electron populations 1.21733 0.92193 1.03994 1.01899 1.20368 0.97573 0.83247 1.06007 1.25564 1.03020 0.98510 0.81670 1.73788 1.17808 0.99714 1.26875 1.74623 1.23243 1.14375 1.10225 1.22721 0.96829 0.88771 0.88702 1.59001 1.19201 1.06714 1.32385 1.22334 0.90020 0.98813 0.98965 1.18781 0.89174 0.87883 0.89544 1.01723 1.21384 0.98945 0.96347 0.98472 1.21275 1.33943 1.03244 0.97475 0.91225 1.25880 0.95625 1.01424 0.96209 1.70132 1.37688 1.33913 1.14414 0.85413 0.78588 0.78138 0.78269 1.18650 1.21238 1.19414 1.46223 1.51662 1.09747 1.09130 1.22156 0.97695 1.03217 0.76757 1.23408 0.94137 0.98140 0.98703 1.21781 1.04594 0.91894 1.00445 1.23174 0.87749 0.94972 0.91905 1.50965 1.32665 1.48717 1.05915 1.21593 0.92673 0.96814 0.94550 1.22172 0.85126 0.80576 0.82676 1.90873 1.56209 1.52121 1.39603 0.88215 0.94381 0.91883 0.86456 0.88659 0.89422 0.89835 0.97000 0.93697 0.94865 0.97601 0.92973 0.82778 0.88015 0.86000 0.91499 0.93965 0.85205 0.86318 0.94169 0.89956 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.20 16 2 C -0.03 -0.59 5.71 29.85 0.17 -0.42 16 3 C 0.18 5.87 6.74 137.64 0.93 6.80 16 4 N -0.34 -15.57 12.18 -49.54 -0.60 -16.17 16 5 N -0.38 -20.14 9.92 -58.00 -0.58 -20.72 16 6 C 0.39 17.52 4.46 260.11 1.16 18.68 16 7 N -0.45 -21.24 3.80 -711.00 -2.70 -23.94 16 8 C 0.05 1.81 8.95 127.69 1.14 2.95 16 9 C 0.25 14.82 1.71 44.17 0.08 14.89 16 10 H -0.03 -2.37 7.92 -2.38 -0.02 -2.39 16 11 C -0.09 -5.81 7.78 71.98 0.56 -5.25 16 12 C -0.52 -30.46 7.99 25.60 0.20 -30.26 16 13 H 0.07 3.83 6.41 -2.91 -0.02 3.81 16 14 C 0.01 0.44 5.30 84.65 0.45 0.89 16 15 N -0.92 -58.58 11.34 21.45 0.24 -58.34 16 16 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 N -0.47 -15.17 2.59 -514.85 -1.34 -16.50 16 21 C 0.12 2.32 5.17 86.38 0.45 2.77 16 22 C -0.14 -2.54 1.08 -52.38 -0.06 -2.60 16 23 C -0.13 -1.75 7.73 71.98 0.56 -1.20 16 24 C 0.14 1.51 8.49 86.40 0.73 2.24 16 25 N -0.64 -15.01 3.61 -948.36 -3.42 -18.43 16 26 C 0.09 1.89 11.66 127.77 1.49 3.38 16 27 C 0.51 16.64 7.82 87.68 0.69 17.32 16 28 O -0.52 -24.34 13.11 -3.03 -0.04 -24.38 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 1.24 5.27 -2.39 -0.01 1.23 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 3.41 6.51 -2.39 -0.02 3.39 16 35 H 0.08 2.48 6.39 -2.39 -0.02 2.47 16 36 H 0.01 0.49 8.11 -2.39 -0.02 0.47 16 37 H 0.04 3.01 6.11 -2.39 -0.01 2.99 16 38 H 0.03 2.08 6.09 -2.39 -0.01 2.06 16 39 H 0.00 0.32 6.14 -2.38 -0.01 0.31 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.15 1.21 7.84 -2.39 -0.02 1.19 16 42 H 0.10 1.90 6.22 -2.39 -0.01 1.89 16 43 H 0.12 0.42 7.83 -2.39 -0.02 0.40 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.04 0.84 6.24 -2.38 -0.01 0.83 16 46 H 0.13 0.47 8.01 -2.39 -0.02 0.46 16 47 H 0.12 0.64 7.91 -2.38 -0.02 0.62 16 48 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -97.35 384.31 3.80 -93.56 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.95 Total: 8.42 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 9.26 Total: 29.00 kcal Atomic # 7 Polarization: -145.71 SS G_CDS: -8.39 Total: -154.10 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.04 Total: -24.38 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -97.35 3.80 -93.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001727498458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.307 kcal (2) G-P(sol) polarization free energy of solvation -97.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds