Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46793 * 2 1 4 4 C 1.38049 * 126.28672 * 269.99662 * 3 2 1 5 5 C 1.47430 * 126.41718 * 359.97438 * 4 3 2 6 6 O 1.21607 * 119.99965 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99974 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00070 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47305 * 179.97438 * 8 7 5 10 10 N 1.46899 * 109.47462 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00163 * 169.99896 * 10 9 8 12 12 C 1.53245 * 109.33848 * 172.74528 * 11 10 9 13 13 N 1.47085 * 108.52064 * 53.82868 * 12 11 10 14 14 C 1.36932 * 120.88213 * 128.79288 * 13 12 11 15 15 H 1.08002 * 119.99977 * 333.51665 * 14 13 12 16 16 C 1.38807 * 119.99998 * 153.50990 * 14 13 12 17 17 N 1.31621 * 119.99922 * 159.47661 * 16 14 13 18 18 Si 1.86799 * 120.00305 * 339.47796 * 16 14 13 19 19 H 1.48496 * 109.47486 * 91.94910 * 18 16 14 20 20 H 1.48498 * 109.47306 * 211.95251 * 18 16 14 21 21 H 1.48508 * 109.46864 * 331.95033 * 18 16 14 22 22 C 1.47080 * 118.23666 * 308.81221 * 13 12 11 23 23 C 1.46896 * 110.99839 * 45.68987 * 10 9 8 24 24 C 1.41289 * 107.16640 * 180.25258 * 4 3 2 25 25 N 1.30448 * 108.02565 * 359.61431 * 24 4 3 26 26 N 1.34252 * 126.29814 * 90.02807 * 3 2 1 27 27 C 1.46504 * 125.74650 * 359.95199 * 26 3 2 28 28 H 1.09000 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47543 * 299.99931 * 1 2 3 30 30 H 1.08998 * 109.47478 * 60.00614 * 1 2 3 31 31 H 1.08995 * 109.47108 * 239.99452 * 2 1 3 32 32 H 1.09004 * 109.46873 * 119.99689 * 2 1 3 33 33 H 0.97004 * 120.00177 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47402 * 59.99143 * 8 7 5 35 35 H 1.09000 * 109.46851 * 299.99234 * 8 7 5 36 36 H 1.08999 * 109.47456 * 59.99341 * 9 8 7 37 37 H 1.09008 * 109.47004 * 299.99588 * 9 8 7 38 38 H 1.09000 * 109.49448 * 52.78501 * 11 10 9 39 39 H 1.08995 * 109.49153 * 292.70371 * 11 10 9 40 40 H 1.08998 * 109.62846 * 173.53869 * 12 11 10 41 41 H 1.08997 * 109.62949 * 293.92586 * 12 11 10 42 42 H 0.97009 * 119.99909 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.62655 * 170.89395 * 22 13 12 44 44 H 1.08993 * 109.63223 * 291.48019 * 22 13 12 45 45 H 1.09001 * 109.49168 * 67.30395 * 23 10 9 46 46 H 1.08994 * 109.52148 * 307.23052 * 23 10 9 47 47 H 1.08004 * 125.98352 * 179.74148 * 24 4 3 48 48 H 1.09004 * 109.47159 * 90.00824 * 27 26 3 49 49 H 1.09004 * 109.46675 * 210.00027 * 27 26 3 50 50 H 1.09000 * 109.47544 * 329.99957 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3046 2.1911 -1.1128 5 6 2.1591 1.7776 -2.5204 6 8 1.7647 0.6588 -2.7878 7 7 2.4642 2.6393 -3.5108 8 6 2.3191 2.2286 -4.9096 9 6 2.7275 3.3841 -5.8254 10 7 2.5826 2.9722 -7.2280 11 6 2.7357 4.1197 -8.1322 12 6 2.7592 3.6238 -9.5820 13 7 1.5605 2.8039 -9.8149 14 6 0.7407 3.0455 -10.8848 15 1 0.6875 4.0363 -11.3114 16 6 -0.0217 2.0171 -11.4211 17 7 -1.0812 2.2949 -12.1510 18 14 0.4558 0.2386 -11.1071 19 1 -0.2505 -0.2576 -9.8988 20 1 0.0748 -0.5905 -12.2786 21 1 1.9229 0.1502 -10.8942 22 6 1.2654 1.7180 -8.8678 23 6 1.3007 2.2889 -7.4461 24 6 2.7551 3.4478 -0.6500 25 7 2.7420 3.4260 0.6543 26 7 2.2976 2.1700 1.0820 27 6 2.1468 1.7443 2.4757 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.7792 3.5316 -3.2975 34 1 1.2805 1.9611 -5.1039 35 1 2.9585 1.3674 -5.1036 36 1 3.7661 3.6521 -5.6312 37 1 2.0878 4.2451 -5.6313 38 1 3.6691 4.6365 -7.9093 39 1 1.8988 4.8045 -7.9956 40 1 2.7571 4.4766 -10.2608 41 1 3.6543 3.0247 -9.7495 42 1 -1.6138 1.5761 -12.5261 43 1 0.2757 1.3109 -9.0745 44 1 2.0151 0.9329 -8.9657 45 1 0.4837 2.9993 -7.3192 46 1 1.1929 1.4781 -6.7258 47 1 3.0555 4.2811 -1.2679 48 1 3.0782 1.2957 2.8214 49 1 1.9078 2.6084 3.0956 50 1 1.3424 1.0122 2.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731367763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = 77.871479 kcal Electronic energy + Delta-G solvation = -28948.333573 eV Core-core repulsion = 25013.382445 eV Total energy + Delta-G solvation = -3934.951128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86835 -39.41250 -38.39572 -35.61733 -34.77723 -33.88597 -33.36072 -31.63390 -30.51993 -29.92357 -28.95816 -27.47761 -25.95809 -24.24646 -23.46659 -23.10549 -22.53761 -21.32814 -20.70361 -19.84881 -19.38784 -17.84972 -16.81842 -16.30870 -16.27539 -16.01866 -15.57110 -15.18163 -14.96235 -14.67056 -14.56423 -14.25944 -14.11231 -14.03567 -13.87801 -13.65219 -13.51366 -13.23177 -13.11241 -12.78088 -12.64106 -12.43337 -12.06127 -11.89113 -11.78038 -11.65957 -11.58731 -11.35303 -11.05411 -10.85707 -10.57637 -10.27843 -10.01831 -9.95829 -9.82578 -9.78935 -9.42244 -9.20538 -8.85903 -8.62344 -8.02608 -6.93330 -5.91543 -3.26789 1.17817 1.84592 1.91250 3.07983 3.30848 3.37389 3.53423 3.58153 4.00598 4.06565 4.30347 4.45096 4.57474 4.58867 4.62440 4.78488 4.85390 4.89338 4.91592 4.99640 5.03230 5.10435 5.20576 5.31543 5.35846 5.45609 5.53521 5.65202 5.72850 5.78325 5.86755 5.88028 5.92575 5.98451 6.02814 6.04850 6.11033 6.23202 6.35952 6.40543 6.42885 6.61153 6.68249 6.90677 7.14679 7.35576 7.41024 7.46980 7.97358 8.19428 8.35393 8.96189 9.75176 10.14532 11.24396 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002197 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.053080 B =12743.126697 C =13682.909478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C 0.162 3.838 4 C -0.296 4.296 5 C 0.595 3.405 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.117 3.883 9 C 0.045 3.955 10 N -0.530 5.530 11 C 0.044 3.956 12 C 0.152 3.848 13 N -0.609 5.609 14 C -0.259 4.259 15 H 0.085 0.915 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.883 3.117 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.269 1.269 22 C 0.130 3.870 23 C 0.033 3.967 24 C 0.083 3.917 25 N -0.299 5.299 26 N -0.363 5.363 27 C 0.095 3.905 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.397 0.603 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.190 0.810 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 0.079 30.288 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C 0.030 3.970 4 C -0.311 4.311 5 C 0.383 3.617 6 O -0.422 6.422 7 N -0.377 5.377 8 C -0.006 4.006 9 C -0.084 4.084 10 N -0.255 5.255 11 C -0.086 4.086 12 C 0.026 3.974 13 N -0.333 5.333 14 C -0.387 4.387 15 H 0.103 0.897 16 C -0.178 4.178 17 N -0.553 5.553 18 Si 0.714 3.286 19 H -0.215 1.215 20 H -0.232 1.232 21 H -0.194 1.194 22 C 0.004 3.996 23 C -0.096 4.096 24 C -0.105 4.105 25 N -0.118 5.118 26 N -0.142 5.142 27 C -0.046 4.046 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.092 0.908 47 H 0.206 0.794 48 H 0.098 0.902 49 H 0.113 0.887 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.267 -0.457 31.066 32.150 hybrid contribution -0.414 -0.261 -0.239 0.545 sum 7.853 -0.718 30.827 31.820 Atomic orbital electron populations 1.21647 0.93271 1.02703 1.02261 1.20482 0.97206 0.88280 1.04968 1.21571 0.94412 0.94827 0.86213 1.19992 1.21022 0.96477 0.93561 1.17133 0.76730 0.84349 0.83522 1.90755 1.47065 1.20221 1.84207 1.45684 1.68866 1.16945 1.06202 1.21540 1.02508 0.97967 0.78627 1.22244 1.01200 0.95667 0.89254 1.61986 1.34321 1.27078 1.02133 1.22647 0.99672 0.91135 0.95116 1.20994 0.89539 0.94863 0.92051 1.44420 1.25382 1.36184 1.27317 1.18918 1.17341 0.95704 1.06718 0.89712 1.25265 0.97190 0.97868 0.97447 1.69841 1.15440 1.32231 1.37806 0.86951 0.79414 0.86376 0.75864 1.21529 1.23213 1.19413 1.21442 0.99717 0.91156 0.87303 1.22818 0.89108 0.98038 0.99625 1.24021 0.97205 0.97218 0.92032 1.77187 1.22026 0.99282 1.13284 1.48350 1.49768 1.09710 1.06397 1.21986 1.03359 1.01948 0.77323 0.91302 0.93287 0.91493 0.86841 0.90756 0.76944 0.90771 0.90399 0.90487 0.94637 0.91481 0.94773 0.91629 0.95138 0.92804 0.90714 0.94847 0.94514 0.90821 0.79362 0.90203 0.88750 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 37.16 0.37 -0.69 16 2 C -0.07 -0.56 5.39 -27.88 -0.15 -0.71 16 3 C 0.16 1.55 6.26 -81.60 -0.51 1.04 16 4 C -0.30 -3.13 6.13 -105.06 -0.64 -3.78 16 5 C 0.60 7.33 7.81 -12.52 -0.10 7.23 16 6 O -0.54 -8.36 14.84 5.27 0.08 -8.28 16 7 N -0.73 -7.55 5.55 -61.38 -0.34 -7.89 16 8 C 0.12 1.45 4.92 -4.04 -0.02 1.43 16 9 C 0.04 0.55 5.38 -3.83 -0.02 0.53 16 10 N -0.53 -8.55 4.78 -234.32 -1.12 -9.66 16 11 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 12 C 0.15 3.02 6.69 -3.60 -0.02 2.99 16 13 N -0.61 -14.75 2.82 -172.01 -0.48 -15.24 16 14 C -0.26 -7.32 10.08 -15.06 -0.15 -7.47 16 15 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 16 C 0.02 0.62 5.24 -17.43 -0.09 0.52 16 17 N -0.91 -28.21 13.97 55.49 0.78 -27.43 16 18 Si 0.88 22.86 24.31 -169.99 -4.13 18.72 16 19 H -0.29 -7.17 6.58 56.52 0.37 -6.80 16 20 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 21 H -0.27 -6.90 6.61 56.52 0.37 -6.53 16 22 C 0.13 2.92 4.35 -3.60 -0.02 2.90 16 23 C 0.03 0.61 5.04 -3.70 -0.02 0.59 16 24 C 0.08 0.75 11.50 -16.98 -0.20 0.55 16 25 N -0.30 -3.01 12.50 30.86 0.39 -2.63 16 26 N -0.36 -3.11 3.98 -63.34 -0.25 -3.36 16 27 C 0.09 0.39 11.06 59.85 0.66 1.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 1.13 6.50 -51.93 -0.34 0.79 16 32 H 0.07 0.39 7.70 -51.93 -0.40 -0.01 16 33 H 0.40 2.94 7.43 -40.82 -0.30 2.64 16 34 H 0.07 1.04 6.18 -51.93 -0.32 0.72 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.42 8.08 -51.92 -0.42 0.00 16 38 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.27 7.95 -51.93 -0.41 0.85 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.07 1.83 4.60 -51.93 -0.24 1.59 16 44 H 0.03 0.77 6.94 -51.93 -0.36 0.41 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.22 5.73 -51.93 -0.30 0.93 16 47 H 0.19 1.04 7.50 -52.48 -0.39 0.64 16 48 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.21 7.62 -51.93 -0.40 -0.19 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -35.75 390.51 -8.28 -44.03 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.14 Total: -1.04 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.93 Total: 6.90 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -1.04 Total: -66.21 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.75 -8.28 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731367763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.903 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds