Wall clock time and date at job start Tue Mar 31 2020 19:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46793 * 2 1 4 4 C 1.38049 * 126.28672 * 269.99662 * 3 2 1 5 5 C 1.47430 * 126.41718 * 359.97438 * 4 3 2 6 6 O 1.21607 * 119.99965 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99974 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00070 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47305 * 179.97438 * 8 7 5 10 10 N 1.46899 * 109.47462 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00163 * 169.99896 * 10 9 8 12 12 C 1.53245 * 109.33848 * 172.74528 * 11 10 9 13 13 N 1.47085 * 108.52064 * 53.82868 * 12 11 10 14 14 C 1.36932 * 120.88213 * 128.79288 * 13 12 11 15 15 H 1.08002 * 119.99977 * 333.51665 * 14 13 12 16 16 C 1.38807 * 119.99998 * 153.50990 * 14 13 12 17 17 N 1.31621 * 119.99922 * 159.47661 * 16 14 13 18 18 Si 1.86799 * 120.00305 * 339.47796 * 16 14 13 19 19 H 1.48496 * 109.47486 * 91.94910 * 18 16 14 20 20 H 1.48498 * 109.47306 * 211.95251 * 18 16 14 21 21 H 1.48508 * 109.46864 * 331.95033 * 18 16 14 22 22 C 1.47080 * 118.23666 * 308.81221 * 13 12 11 23 23 C 1.46896 * 110.99839 * 45.68987 * 10 9 8 24 24 C 1.41289 * 107.16640 * 180.25258 * 4 3 2 25 25 N 1.30448 * 108.02565 * 359.61431 * 24 4 3 26 26 N 1.34252 * 126.29814 * 90.02807 * 3 2 1 27 27 C 1.46504 * 125.74650 * 359.95199 * 26 3 2 28 28 H 1.09000 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47543 * 299.99931 * 1 2 3 30 30 H 1.08998 * 109.47478 * 60.00614 * 1 2 3 31 31 H 1.08995 * 109.47108 * 239.99452 * 2 1 3 32 32 H 1.09004 * 109.46873 * 119.99689 * 2 1 3 33 33 H 0.97004 * 120.00177 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47402 * 59.99143 * 8 7 5 35 35 H 1.09000 * 109.46851 * 299.99234 * 8 7 5 36 36 H 1.08999 * 109.47456 * 59.99341 * 9 8 7 37 37 H 1.09008 * 109.47004 * 299.99588 * 9 8 7 38 38 H 1.09000 * 109.49448 * 52.78501 * 11 10 9 39 39 H 1.08995 * 109.49153 * 292.70371 * 11 10 9 40 40 H 1.08998 * 109.62846 * 173.53869 * 12 11 10 41 41 H 1.08997 * 109.62949 * 293.92586 * 12 11 10 42 42 H 0.97009 * 119.99909 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.62655 * 170.89395 * 22 13 12 44 44 H 1.08993 * 109.63223 * 291.48019 * 22 13 12 45 45 H 1.09001 * 109.49168 * 67.30395 * 23 10 9 46 46 H 1.08994 * 109.52148 * 307.23052 * 23 10 9 47 47 H 1.08004 * 125.98352 * 179.74148 * 24 4 3 48 48 H 1.09004 * 109.47159 * 90.00824 * 27 26 3 49 49 H 1.09004 * 109.46675 * 210.00027 * 27 26 3 50 50 H 1.09000 * 109.47544 * 329.99957 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3046 2.1911 -1.1128 5 6 2.1591 1.7776 -2.5204 6 8 1.7647 0.6588 -2.7878 7 7 2.4642 2.6393 -3.5108 8 6 2.3191 2.2286 -4.9096 9 6 2.7275 3.3841 -5.8254 10 7 2.5826 2.9722 -7.2280 11 6 2.7357 4.1197 -8.1322 12 6 2.7592 3.6238 -9.5820 13 7 1.5605 2.8039 -9.8149 14 6 0.7407 3.0455 -10.8848 15 1 0.6875 4.0363 -11.3114 16 6 -0.0217 2.0171 -11.4211 17 7 -1.0812 2.2949 -12.1510 18 14 0.4558 0.2386 -11.1071 19 1 -0.2505 -0.2576 -9.8988 20 1 0.0748 -0.5905 -12.2786 21 1 1.9229 0.1502 -10.8942 22 6 1.2654 1.7180 -8.8678 23 6 1.3007 2.2889 -7.4461 24 6 2.7551 3.4478 -0.6500 25 7 2.7420 3.4260 0.6543 26 7 2.2976 2.1700 1.0820 27 6 2.1468 1.7443 2.4757 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.7792 3.5316 -3.2975 34 1 1.2805 1.9611 -5.1039 35 1 2.9585 1.3674 -5.1036 36 1 3.7661 3.6521 -5.6312 37 1 2.0878 4.2451 -5.6313 38 1 3.6691 4.6365 -7.9093 39 1 1.8988 4.8045 -7.9956 40 1 2.7571 4.4766 -10.2608 41 1 3.6543 3.0247 -9.7495 42 1 -1.6138 1.5761 -12.5261 43 1 0.2757 1.3109 -9.0745 44 1 2.0151 0.9329 -8.9657 45 1 0.4837 2.9993 -7.3192 46 1 1.1929 1.4781 -6.7258 47 1 3.0555 4.2811 -1.2679 48 1 3.0782 1.2957 2.8214 49 1 1.9078 2.6084 3.0956 50 1 1.3424 1.0122 2.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731367763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:13 Heat of formation + Delta-G solvation = 50.064218 kcal Electronic energy + Delta-G solvation = -28949.539386 eV Core-core repulsion = 25013.382445 eV Total energy + Delta-G solvation = -3936.156941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53456 -40.44609 -39.73493 -36.97672 -35.65841 -35.02235 -33.96580 -33.57122 -32.07739 -30.88851 -29.98101 -28.30380 -27.26121 -25.10661 -24.93864 -24.57726 -23.44485 -22.51511 -21.48317 -21.05911 -20.51999 -18.84901 -18.53835 -17.61398 -16.98923 -16.87430 -16.71695 -16.38598 -15.96268 -15.78932 -15.72953 -15.60478 -15.45944 -15.21989 -15.12816 -14.57530 -14.37217 -14.28919 -14.21800 -13.77662 -13.63588 -13.48763 -13.39947 -13.23637 -12.94526 -12.74619 -12.64823 -12.38023 -12.21311 -12.20770 -12.09946 -11.77176 -11.70321 -11.56593 -11.42128 -10.90848 -10.73143 -10.43306 -10.14311 -9.59877 -9.37229 -8.89757 -8.17374 -5.48248 0.46890 1.14000 1.30194 1.37774 1.41004 1.50690 2.18194 2.41162 2.45410 2.99555 3.09072 3.37160 3.46791 3.51340 3.80639 3.89769 4.02988 4.08638 4.16422 4.23580 4.25892 4.28538 4.38370 4.41211 4.44086 4.47646 4.57065 4.58091 4.62995 4.64274 4.68315 4.72562 4.83165 4.91709 4.95944 4.98533 5.02080 5.03150 5.17793 5.26572 5.31492 5.39412 5.46657 5.82556 5.85581 6.05097 6.08426 6.19181 6.47739 6.65588 6.89496 7.32446 7.60891 8.03853 9.02359 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002197 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.053080 B =12743.126697 C =13682.909478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.159 3.841 4 C -0.321 4.321 5 C 0.592 3.408 6 O -0.582 6.582 7 N -0.712 5.712 8 C 0.125 3.875 9 C 0.054 3.946 10 N -0.536 5.536 11 C 0.054 3.946 12 C 0.144 3.856 13 N -0.624 5.624 14 C -0.246 4.246 15 H 0.056 0.944 16 C -0.036 4.036 17 N -0.957 5.957 18 Si 0.945 3.055 19 H -0.275 1.275 20 H -0.310 1.310 21 H -0.264 1.264 22 C 0.125 3.875 23 C 0.046 3.954 24 C 0.088 3.912 25 N -0.323 5.323 26 N -0.361 5.361 27 C 0.082 3.918 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.414 0.586 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.048 0.952 38 H 0.107 0.893 39 H 0.025 0.975 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.034 0.966 45 H 0.025 0.975 46 H 0.090 0.910 47 H 0.219 0.781 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 0.242 33.550 34.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C 0.024 3.976 4 C -0.336 4.336 5 C 0.381 3.619 6 O -0.464 6.464 7 N -0.365 5.365 8 C 0.001 3.999 9 C -0.074 4.074 10 N -0.262 5.262 11 C -0.075 4.075 12 C 0.019 3.981 13 N -0.349 5.349 14 C -0.376 4.376 15 H 0.073 0.927 16 C -0.231 4.231 17 N -0.603 5.603 18 Si 0.775 3.225 19 H -0.202 1.202 20 H -0.239 1.239 21 H -0.189 1.189 22 C -0.001 4.001 23 C -0.083 4.083 24 C -0.100 4.100 25 N -0.142 5.142 26 N -0.139 5.139 27 C -0.057 4.057 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.125 0.875 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.109 0.891 47 H 0.235 0.765 48 H 0.113 0.887 49 H 0.120 0.880 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.191 -0.247 34.399 35.877 hybrid contribution -0.947 -0.229 -1.160 1.515 sum 9.244 -0.477 33.238 34.503 Atomic orbital electron populations 1.21604 0.93022 1.03244 1.01537 1.20476 0.97306 0.87581 1.05276 1.21831 0.93857 0.95384 0.86500 1.20008 1.22964 0.97743 0.92872 1.17437 0.76048 0.83942 0.84458 1.90735 1.48907 1.21884 1.84837 1.45485 1.68327 1.17548 1.05099 1.21301 1.01010 0.97847 0.79753 1.22260 1.03192 0.95559 0.86408 1.61936 1.32544 1.27284 1.04432 1.22511 1.01392 0.90890 0.92684 1.21219 0.87832 0.94284 0.94767 1.44575 1.26500 1.37164 1.26663 1.18887 1.17074 0.94411 1.07185 0.92674 1.25869 0.97363 1.01678 0.98205 1.69962 1.16925 1.33237 1.40175 0.85943 0.79214 0.81629 0.75763 1.20208 1.23870 1.18865 1.21440 0.98243 0.90953 0.89436 1.22555 0.90152 0.98520 0.97088 1.24466 0.96163 0.97360 0.91973 1.77145 1.22925 1.00361 1.13800 1.48675 1.48658 1.09044 1.07531 1.22382 1.05063 1.02956 0.75285 0.90167 0.91646 0.94458 0.89213 0.87695 0.74952 0.92723 0.91685 0.87603 0.93384 0.87454 0.95645 0.91792 0.94478 0.92973 0.93115 0.94840 0.95660 0.89146 0.76512 0.88666 0.87998 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.07 -0.98 5.39 29.85 0.16 -0.82 16 3 C 0.16 2.80 6.26 42.14 0.26 3.07 16 4 C -0.32 -6.42 6.13 -20.15 -0.12 -6.54 16 5 C 0.59 14.14 7.81 86.67 0.68 14.81 16 6 O -0.58 -18.06 14.84 -4.05 -0.06 -18.12 16 7 N -0.71 -13.44 5.55 -466.37 -2.59 -16.03 16 8 C 0.13 2.86 4.92 86.38 0.43 3.28 16 9 C 0.05 1.11 5.38 86.30 0.46 1.58 16 10 N -0.54 -15.79 4.78 -895.25 -4.28 -20.07 16 11 C 0.05 1.61 5.58 86.39 0.48 2.09 16 12 C 0.14 5.51 6.69 86.35 0.58 6.09 16 13 N -0.62 -30.11 2.82 -698.12 -1.97 -32.08 16 14 C -0.25 -14.23 10.08 84.03 0.85 -13.38 16 15 H 0.06 3.45 8.05 -2.91 -0.02 3.42 16 16 C -0.04 -2.19 5.24 84.86 0.44 -1.74 16 17 N -0.96 -61.21 13.97 21.65 0.30 -60.91 16 18 Si 0.95 48.24 24.31 68.60 1.67 49.91 16 19 H -0.28 -13.35 6.58 99.48 0.65 -12.69 16 20 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 21 H -0.26 -13.08 6.61 99.48 0.66 -12.42 16 22 C 0.12 5.52 4.35 86.35 0.38 5.90 16 23 C 0.05 1.63 5.04 86.39 0.44 2.07 16 24 C 0.09 1.40 11.50 85.65 0.99 2.39 16 25 N -0.32 -5.88 12.50 -56.27 -0.70 -6.58 16 26 N -0.36 -5.42 3.98 -354.29 -1.41 -6.83 16 27 C 0.08 0.46 11.06 127.77 1.41 1.88 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.79 6.50 -2.39 -0.02 1.78 16 32 H 0.10 0.83 7.70 -2.39 -0.02 0.82 16 33 H 0.41 4.89 7.43 -92.71 -0.69 4.20 16 34 H 0.05 1.48 6.18 -2.39 -0.01 1.46 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 0.93 8.08 -2.38 -0.02 0.91 16 38 H 0.11 2.40 8.11 -2.39 -0.02 2.38 16 39 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 43 H 0.05 2.48 4.60 -2.39 -0.01 2.47 16 44 H 0.03 1.49 6.94 -2.39 -0.02 1.47 16 45 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 46 H 0.09 2.89 5.73 -2.39 -0.01 2.88 16 47 H 0.22 1.75 7.50 -2.91 -0.02 1.73 16 48 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 49 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.11 0.14 7.62 -2.39 -0.02 0.12 16 Total: -1.00 -80.33 390.51 -0.74 -81.07 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.15 Total: 10.17 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 8.14 Total: 19.48 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -10.64 Total: -142.50 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.06 Total: -18.12 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.67 Total: 49.91 kcal Total: -80.33 -0.74 -81.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731367763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.133 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds