Wall clock time and date at job start Tue Mar 31 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36597 * 126.58574 * 2 1 4 4 C 1.47528 * 125.76341 * 0.03360 * 3 2 1 5 5 O 1.21593 * 120.00395 * 359.71971 * 4 3 2 6 6 N 1.34780 * 119.99712 * 179.71742 * 4 3 2 7 7 C 1.47025 * 125.64858 * 0.04090 * 6 4 3 8 8 C 1.54319 * 107.27229 * 181.02191 * 7 6 4 9 9 C 1.55165 * 102.94103 * 22.19728 * 8 7 6 10 10 H 1.08997 * 111.03885 * 82.58762 * 9 8 7 11 11 C 1.53001 * 111.00140 * 206.42329 * 9 8 7 12 12 N 1.46503 * 109.46815 * 178.64864 * 11 9 8 13 13 C 1.46493 * 120.00015 * 89.99987 * 12 11 9 14 14 C 1.36939 * 119.99663 * 269.99746 * 12 11 9 15 15 H 1.07999 * 120.00341 * 334.62626 * 14 12 11 16 16 C 1.38818 * 119.99726 * 154.62691 * 14 12 11 17 17 N 1.31618 * 119.99903 * 3.92049 * 16 14 12 18 18 Si 1.86800 * 119.99547 * 183.91783 * 16 14 12 19 19 H 1.48491 * 109.47600 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46884 * 120.00248 * 18 16 14 21 21 H 1.48507 * 109.46690 * 239.99647 * 18 16 14 22 22 C 1.47422 * 125.64897 * 179.97438 * 6 4 3 23 23 N 1.34395 * 108.46269 * 179.76843 * 3 2 1 24 24 N 1.28758 * 109.52337 * 0.23236 * 23 3 2 25 25 N 1.34813 * 126.57994 * 180.16185 * 2 1 3 26 26 C 1.46506 * 126.59542 * 0.02562 * 25 2 1 27 27 C 1.52999 * 109.47067 * 120.27030 * 26 25 2 28 28 C 1.53000 * 109.47268 * 240.27431 * 26 25 2 29 29 H 1.09006 * 109.46691 * 90.02455 * 1 2 3 30 30 H 1.08997 * 109.47199 * 210.02679 * 1 2 3 31 31 H 1.09003 * 109.46926 * 330.03162 * 1 2 3 32 32 H 1.09000 * 109.87899 * 300.44374 * 7 6 4 33 33 H 1.08998 * 109.88350 * 61.45172 * 7 6 4 34 34 H 1.08997 * 110.72592 * 263.83226 * 8 7 6 35 35 H 1.09001 * 110.71969 * 140.55566 * 8 7 6 36 36 H 1.08997 * 109.47248 * 58.64863 * 11 9 8 37 37 H 1.09004 * 109.46995 * 298.64625 * 11 9 8 38 38 H 1.09000 * 109.47388 * 264.46359 * 13 12 11 39 39 H 1.09007 * 109.47360 * 144.46797 * 13 12 11 40 40 H 1.08999 * 109.47425 * 24.46582 * 13 12 11 41 41 H 0.96996 * 119.99876 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.36764 * 37.06623 * 22 6 4 43 43 H 1.09000 * 110.46046 * 274.79496 * 22 6 4 44 44 H 1.09000 * 109.46840 * 0.27201 * 26 25 2 45 45 H 1.08998 * 109.47309 * 300.00389 * 27 26 25 46 46 H 1.09000 * 109.47150 * 60.00362 * 27 26 25 47 47 H 1.09000 * 109.47130 * 180.02562 * 27 26 25 48 48 H 1.08991 * 109.47216 * 59.99435 * 28 26 25 49 49 H 1.09000 * 109.46987 * 179.97438 * 28 26 25 50 50 H 1.09000 * 109.47002 * 299.99670 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6860 2.7628 -0.0038 6 7 2.7818 3.4987 0.0064 7 6 4.2420 3.3271 0.0114 8 6 4.8689 4.7368 0.0433 9 6 3.7274 5.6117 0.6256 10 1 3.7055 5.5527 1.7138 11 6 3.8574 7.0635 0.1605 12 7 2.7473 7.8511 0.7024 13 6 2.8844 8.5125 2.0023 14 6 1.5815 7.9689 -0.0063 15 1 1.5893 7.8601 -1.0808 16 6 0.3896 8.2284 0.6563 17 7 0.3912 8.4376 1.9558 18 14 -1.2164 8.2807 -0.2963 19 1 -0.9488 8.0156 -1.7327 20 1 -2.1406 7.2467 0.2346 21 1 -1.8363 9.6220 -0.1480 22 6 2.4753 4.9407 0.0072 23 7 3.5984 0.6788 0.0052 24 7 3.6299 -0.6084 0.0034 25 7 2.3104 -1.0826 -0.0031 26 6 1.8863 -2.4849 -0.0075 27 6 2.4352 -3.1797 -1.2553 28 6 2.4229 -3.1840 1.2432 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 4.5462 2.7659 0.8949 33 1 4.5563 2.7994 -0.8891 34 1 5.1316 5.0650 -0.9624 35 1 5.7412 4.7562 0.6966 36 1 3.8312 7.0999 -0.9285 37 1 4.8023 7.4754 0.5152 38 1 2.4601 7.8772 2.7798 39 1 2.3552 9.4653 1.9828 40 1 3.9397 8.6872 2.2116 41 1 -0.4417 8.6186 2.4189 42 1 1.5961 5.1413 0.6194 43 1 2.3172 5.2972 -1.0106 44 1 0.7975 -2.5352 -0.0130 45 1 2.0529 -2.6816 -2.1463 46 1 3.5240 -3.1294 -1.2499 47 1 2.1193 -4.2229 -1.2589 48 1 2.0319 -2.6890 2.1320 49 1 2.1070 -4.2272 1.2400 50 1 3.5117 -3.1338 1.2486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732078757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:19 Heat of formation + Delta-G solvation = 63.074405 kcal Electronic energy + Delta-G solvation = -29916.278566 eV Core-core repulsion = 25980.685789 eV Total energy + Delta-G solvation = -3935.592777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.38284 -40.85439 -38.84775 -37.40566 -37.06120 -34.11221 -33.88376 -32.50912 -31.72810 -30.03490 -29.01425 -28.28858 -27.86750 -27.17744 -25.20229 -24.72268 -23.19969 -22.75109 -21.29190 -21.00690 -20.32243 -18.80995 -18.45248 -17.54371 -17.30625 -17.09547 -16.79007 -16.38868 -15.71526 -15.37580 -15.32667 -15.15114 -14.97322 -14.67195 -14.32310 -14.29187 -14.09222 -14.02276 -13.80167 -13.68054 -13.33208 -13.23165 -13.20037 -12.97950 -12.94562 -12.74187 -12.61187 -12.54829 -12.48198 -12.27602 -12.04106 -12.02746 -11.94117 -11.71462 -11.55598 -11.39222 -11.16808 -11.11705 -10.56720 -10.27589 -9.61053 -8.69878 -7.80611 -5.26105 0.06621 0.58922 1.00752 1.41810 1.47244 1.53314 1.96110 2.15930 2.51321 3.08136 3.24160 3.36089 3.46430 3.58818 3.70194 3.79769 3.81699 3.95573 3.98959 4.08208 4.15620 4.39101 4.44552 4.53587 4.56923 4.60490 4.62704 4.65591 4.74125 4.78356 4.80278 4.84519 4.90807 4.97529 5.00234 5.06418 5.09219 5.11950 5.17065 5.21226 5.30030 5.37486 5.47599 5.53423 5.54822 5.69066 5.85086 6.39562 6.48330 6.81564 7.07299 7.22522 7.94108 8.37040 9.23231 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016587 B = 0.002965 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.686937 B = 9442.351865 C =10584.611984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.130 3.870 3 C -0.127 4.127 4 C 0.602 3.398 5 O -0.574 6.574 6 N -0.609 5.609 7 C 0.115 3.885 8 C -0.114 4.114 9 C -0.107 4.107 10 H 0.056 0.944 11 C 0.162 3.838 12 N -0.622 5.622 13 C 0.181 3.819 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.048 4.048 17 N -0.937 5.937 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.301 1.301 21 H -0.289 1.289 22 C 0.140 3.860 23 N -0.214 5.214 24 N -0.081 5.081 25 N -0.344 5.344 26 C 0.130 3.870 27 C -0.158 4.158 28 C -0.159 4.159 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.071 0.929 38 H -0.006 1.006 39 H 0.023 0.977 40 H 0.027 0.973 41 H 0.244 0.756 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.139 0.861 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.114 0.886 48 H 0.055 0.945 49 H 0.114 0.886 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -26.320 -4.725 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.266 4.266 4 C 0.390 3.610 5 O -0.454 6.454 6 N -0.340 5.340 7 C -0.007 4.007 8 C -0.152 4.152 9 C -0.129 4.129 10 H 0.075 0.925 11 C 0.035 3.965 12 N -0.345 5.345 13 C 0.036 3.964 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.243 4.243 17 N -0.585 5.585 18 Si 0.780 3.220 19 H -0.191 1.191 20 H -0.228 1.228 21 H -0.216 1.216 22 C 0.018 3.982 23 N -0.087 5.087 24 N -0.060 5.060 25 N -0.131 5.131 26 C 0.031 3.969 27 C -0.215 4.215 28 C -0.217 4.217 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.012 0.988 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.157 0.843 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.074 0.926 49 H 0.132 0.868 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.429 -26.626 -4.639 28.030 hybrid contribution -2.265 0.619 -0.001 2.348 sum 5.164 -26.007 -4.640 26.918 Atomic orbital electron populations 1.20800 0.82892 1.05904 1.05634 1.22221 0.97271 0.85960 0.95475 1.21007 0.90059 0.94550 1.20971 1.16807 0.84523 0.83127 0.76507 1.90753 1.16925 1.84090 1.53628 1.48554 1.08294 1.06360 1.70837 1.22140 0.77620 0.98391 1.02514 1.22737 0.97574 0.91702 1.03213 1.22929 0.93294 0.97538 0.99144 0.92502 1.20988 0.90374 0.87772 0.97338 1.44204 1.13436 1.56393 1.20459 1.20569 0.94257 0.95472 0.86059 1.19407 0.85462 1.41857 0.90519 0.91271 1.25748 1.00388 1.01933 0.96228 1.70247 1.25250 1.54684 1.08287 0.85435 0.81237 0.76530 0.78833 1.19091 1.22834 1.21568 1.21938 0.98747 0.77688 0.99843 1.74655 1.19055 1.04575 1.10463 1.81780 0.97990 1.02907 1.23338 1.50943 1.05096 1.08347 1.48680 1.22230 1.02402 0.72981 0.99272 1.22154 1.02116 1.02456 0.94809 1.22170 1.02202 1.02474 0.94851 0.87698 0.86837 0.89621 0.91246 0.90449 0.88942 0.87650 0.92733 0.91074 0.98752 0.95833 0.95480 0.94659 0.94626 0.92395 0.84309 0.92412 0.92215 0.86791 0.92562 0.86756 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.40 71.24 0.67 -1.07 16 2 C 0.13 3.18 7.02 41.72 0.29 3.47 16 3 C -0.13 -4.05 6.85 40.82 0.28 -3.77 16 4 C 0.60 23.52 7.85 86.69 0.68 24.20 16 5 O -0.57 -25.71 14.97 -4.01 -0.06 -25.77 16 6 N -0.61 -22.96 3.33 -815.51 -2.71 -25.67 16 7 C 0.12 3.40 5.52 86.73 0.48 3.88 16 8 C -0.11 -2.97 6.42 31.78 0.20 -2.76 16 9 C -0.11 -3.88 3.29 -9.39 -0.03 -3.91 16 10 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 11 C 0.16 6.20 5.25 86.38 0.45 6.65 16 12 N -0.62 -31.06 2.88 -726.93 -2.09 -33.15 16 13 C 0.18 9.15 8.99 127.77 1.15 10.30 16 14 C -0.24 -13.38 8.72 84.03 0.73 -12.65 16 15 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 16 C -0.05 -2.81 5.38 84.86 0.46 -2.35 16 17 N -0.94 -57.30 10.13 21.65 0.22 -57.08 16 18 Si 0.95 47.79 29.56 68.60 2.03 49.81 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 21 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 22 C 0.14 5.94 5.36 86.86 0.47 6.40 16 23 N -0.21 -6.53 9.77 -49.99 -0.49 -7.02 16 24 N -0.08 -2.13 13.67 37.02 0.51 -1.62 16 25 N -0.34 -6.93 3.28 -313.38 -1.03 -7.96 16 26 C 0.13 1.29 3.68 44.99 0.17 1.46 16 27 C -0.16 -1.25 9.47 71.98 0.68 -0.57 16 28 C -0.16 -1.32 9.47 71.98 0.68 -0.64 16 29 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.11 1.12 7.20 -2.39 -0.02 1.10 16 31 H 0.09 2.19 6.43 -2.39 -0.02 2.18 16 32 H 0.07 2.04 7.62 -2.39 -0.02 2.02 16 33 H 0.08 2.14 7.73 -2.39 -0.02 2.12 16 34 H 0.09 2.11 8.04 -2.39 -0.02 2.09 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 2.01 7.99 -2.39 -0.02 1.99 16 37 H 0.07 2.35 7.86 -2.39 -0.02 2.33 16 38 H -0.01 -0.33 7.43 -2.39 -0.02 -0.35 16 39 H 0.02 1.29 7.04 -2.38 -0.02 1.27 16 40 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 41 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 43 H 0.06 2.52 8.00 -2.39 -0.02 2.50 16 44 H 0.14 0.59 6.79 -2.39 -0.02 0.57 16 45 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -77.65 398.98 4.65 -73.00 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.92 Total: 6.83 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.36 Total: 28.63 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -5.60 Total: -132.50 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Total: -77.65 4.65 -73.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732078757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.079 kcal (2) G-P(sol) polarization free energy of solvation -77.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds