Wall clock time and date at job start Tue Mar 31 2020 20:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47461 * 119.99897 * 2 1 3 5 5 C 1.53001 * 109.46962 * 65.29269 * 4 2 1 6 6 H 1.08998 * 109.46941 * 305.95053 * 5 4 2 7 7 C 1.53004 * 109.46832 * 65.94454 * 5 4 2 8 8 N 1.46505 * 109.46775 * 174.99714 * 7 5 4 9 9 C 1.36930 * 119.99878 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00168 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00032 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00059 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47053 * 89.99820 * 13 11 9 15 15 H 1.48501 * 109.47129 * 209.99867 * 13 11 9 16 16 H 1.48501 * 109.46815 * 329.99770 * 13 11 9 17 17 N 1.46490 * 109.47021 * 185.94787 * 5 4 2 18 18 C 1.34773 * 120.00285 * 81.54205 * 17 5 4 19 19 O 1.21283 * 119.99985 * 5.07549 * 18 17 5 20 20 C 1.50696 * 120.00283 * 185.07417 * 18 17 5 21 21 H 1.09000 * 109.69012 * 59.46060 * 20 18 17 22 22 C 1.53442 * 109.69618 * 180.02562 * 20 18 17 23 23 C 1.53101 * 109.55397 * 169.43698 * 22 20 18 24 24 C 1.53425 * 109.58264 * 289.94539 * 23 22 20 25 25 C 1.50591 * 108.33486 * 49.82893 * 24 23 22 26 26 N 1.32906 * 129.16770 * 163.47463 * 25 24 23 27 27 N 1.29016 * 108.64026 * 180.10781 * 26 25 24 28 28 N 1.29113 * 110.25846 * 359.96979 * 27 26 25 29 29 H 0.96996 * 126.00994 * 179.97438 * 28 27 26 30 30 C 1.34396 * 107.98320 * 359.93446 * 28 27 26 31 31 H 1.09000 * 109.47562 * 54.59624 * 1 2 3 32 32 H 1.09003 * 109.47297 * 294.60106 * 1 2 3 33 33 H 1.08999 * 109.47200 * 174.60155 * 1 2 3 34 34 H 1.08997 * 109.47145 * 240.00206 * 2 1 3 35 35 H 1.08997 * 109.46955 * 60.00090 * 3 2 1 36 36 H 1.09000 * 109.46770 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47111 * 299.99832 * 3 2 1 38 38 H 1.08998 * 109.47162 * 185.29684 * 4 2 1 39 39 H 1.09003 * 109.46758 * 305.29840 * 4 2 1 40 40 H 1.08990 * 109.47611 * 294.99992 * 7 5 4 41 41 H 1.09003 * 109.46700 * 55.00559 * 7 5 4 42 42 H 0.97001 * 119.99651 * 0.02562 * 8 7 5 43 43 H 0.97002 * 120.00443 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00045 * 261.54481 * 17 5 4 45 45 H 1.08994 * 109.45455 * 289.46619 * 22 20 18 46 46 H 1.08997 * 109.45221 * 49.43166 * 22 20 18 47 47 H 1.09003 * 109.45799 * 49.98346 * 23 22 20 48 48 H 1.09005 * 109.45153 * 169.91368 * 23 22 20 49 49 H 1.08998 * 109.68795 * 169.54055 * 24 23 22 50 50 H 1.09002 * 109.69158 * 290.07850 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6416 -2.1970 1.1845 6 1 0.5656 -2.2764 1.0297 7 6 2.3750 -2.8728 0.0241 8 7 2.0868 -4.3092 0.0347 9 6 2.6371 -5.1249 -0.9176 10 1 3.2838 -4.7094 -1.6763 11 6 2.3637 -6.4857 -0.9079 12 7 1.5752 -6.9920 0.0163 13 14 3.1149 -7.5987 -2.2066 14 1 4.4226 -8.1103 -1.7237 15 1 2.2024 -8.7407 -2.4678 16 1 3.3168 -6.8295 -3.4608 17 7 2.0041 -2.8563 2.4415 18 6 1.1965 -2.7504 3.5153 19 8 0.1265 -2.1880 3.4163 20 6 1.6229 -3.3309 4.8390 21 1 2.5565 -2.8683 5.1592 22 6 0.5334 -3.0783 5.8895 23 6 0.8416 -3.8874 7.1521 24 6 0.6345 -5.3811 6.8691 25 6 1.3731 -5.7304 5.6041 26 7 1.7231 -6.9252 5.1391 27 7 2.3448 -6.7662 4.0199 28 7 2.4200 -5.5116 3.7245 29 1 2.8396 -5.1357 2.9349 30 6 1.8137 -4.8179 4.7030 31 1 -0.3634 0.5953 -0.8376 32 1 -0.3634 0.4278 0.9344 33 1 -0.3633 -1.0231 -0.0967 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 3.1259 -0.6398 1.2979 39 1 1.6013 -0.2651 2.1367 40 1 2.0385 -2.4417 -0.9187 41 1 3.4483 -2.7167 0.1326 42 1 1.5057 -4.6822 0.7159 43 1 1.3844 -7.9431 0.0234 44 1 2.8254 -3.3689 2.5010 45 1 0.5058 -2.0170 6.1360 46 1 -0.4337 -3.3836 5.4900 47 1 1.8756 -3.7145 7.4508 48 1 0.1748 -3.5744 7.9556 49 1 1.0271 -5.9698 7.6982 50 1 -0.4284 -5.5871 6.7433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732469979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:21 Heat of formation + Delta-G solvation = 42.677868 kcal Electronic energy + Delta-G solvation = -30803.886604 eV Core-core repulsion = 26867.409366 eV Total energy + Delta-G solvation = -3936.477237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.26735 -40.03578 -37.73265 -36.53170 -35.01833 -33.98048 -33.40612 -31.32483 -30.46992 -29.98341 -29.04435 -27.10406 -25.68737 -24.82503 -23.16925 -22.80827 -22.49799 -21.45417 -20.73256 -19.59490 -19.44886 -18.07826 -17.42440 -16.87364 -16.27012 -15.88113 -15.46139 -15.21139 -14.66862 -14.51893 -14.12057 -14.01097 -13.80023 -13.71480 -13.56130 -13.37213 -13.17808 -12.88460 -12.45319 -12.28270 -12.27623 -12.00921 -11.73777 -11.50156 -11.31507 -11.18709 -11.17968 -11.09951 -10.96917 -10.87505 -10.83191 -10.64030 -10.51520 -10.35756 -10.16304 -10.10355 -9.82662 -9.77125 -9.02132 -8.90199 -8.69633 -7.08409 -5.85368 -3.17920 1.74014 2.56238 2.76719 2.93858 3.19533 3.38950 3.44230 3.47162 4.32168 4.36692 4.49620 4.58178 4.67828 4.84941 4.90070 4.92578 4.99790 5.10898 5.15348 5.26881 5.30278 5.41721 5.43996 5.46769 5.63422 5.64739 5.66967 5.74738 5.76926 5.81829 5.84323 5.90680 5.95152 5.98487 6.05139 6.06131 6.10176 6.19764 6.23082 6.28605 6.34543 6.39528 6.46374 6.57185 6.74206 7.06056 7.49553 7.61586 8.19812 8.30172 8.73959 9.42413 9.93490 10.28786 11.35469 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.005742 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.252826 B = 4875.067346 C = 8408.483191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.134 3.866 6 H 0.093 0.907 7 C 0.142 3.858 8 N -0.734 5.734 9 C -0.256 4.256 10 H 0.071 0.929 11 C -0.004 4.004 12 N -0.921 5.921 13 Si 0.906 3.094 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.283 1.283 17 N -0.718 5.718 18 C 0.517 3.483 19 O -0.525 6.525 20 C -0.029 4.029 21 H 0.114 0.886 22 C -0.096 4.096 23 C -0.118 4.118 24 C -0.033 4.033 25 C -0.010 4.010 26 N -0.270 5.270 27 N -0.049 5.049 28 N -0.362 5.362 29 H 0.450 0.550 30 C -0.029 4.029 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.382 0.618 43 H 0.259 0.741 44 H 0.392 0.608 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 14.361 11.956 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.158 4.158 5 C 0.030 3.970 6 H 0.110 0.890 7 C 0.014 3.986 8 N -0.379 5.379 9 C -0.387 4.387 10 H 0.089 0.911 11 C -0.202 4.202 12 N -0.568 5.568 13 Si 0.737 3.263 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.208 1.208 17 N -0.369 5.369 18 C 0.302 3.698 19 O -0.401 6.401 20 C -0.053 4.053 21 H 0.132 0.868 22 C -0.134 4.134 23 C -0.156 4.156 24 C -0.073 4.073 25 C -0.150 4.150 26 N -0.136 5.136 27 N -0.028 5.028 28 N -0.083 5.083 29 H 0.298 0.702 30 C -0.165 4.165 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.216 0.784 43 H 0.069 0.931 44 H 0.226 0.774 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.102 0.898 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.806 13.173 11.371 17.421 hybrid contribution 0.721 0.134 -1.009 1.247 sum 1.528 13.307 10.363 16.935 Atomic orbital electron populations 1.21867 0.95095 1.02192 1.01333 1.21122 0.96156 0.95833 0.98424 1.21822 1.00716 0.96165 1.01445 1.21969 1.00834 0.94559 0.98398 1.21432 1.01614 0.91164 0.82832 0.88955 1.21054 0.96491 0.86494 0.94587 1.42368 1.58800 1.00966 1.35760 1.19132 1.23820 0.88987 1.06715 0.91124 1.24757 0.99786 0.96904 0.98705 1.69615 1.39461 1.12740 1.34962 0.86223 0.78408 0.80576 0.81083 1.21608 1.21731 1.20848 1.46164 1.25251 1.53626 1.11883 1.20369 0.84506 0.79747 0.85200 1.90700 1.21402 1.43327 1.84648 1.20006 1.02394 0.87939 0.94939 0.86829 1.21447 0.97887 1.01038 0.93042 1.21660 1.02504 0.93908 0.97502 1.19966 0.99413 0.96033 0.91849 1.21625 1.04762 0.88854 0.99763 1.74880 1.12065 1.22815 1.03812 1.78765 1.17144 0.97001 1.09918 1.44925 1.38234 1.06199 1.18964 0.70223 1.21358 1.06093 0.95863 0.93205 0.93079 0.92762 0.92178 0.90425 0.92978 0.92872 0.92839 0.91827 0.91617 0.94326 0.95748 0.78426 0.93115 0.77374 0.90048 0.89911 0.91342 0.90241 0.89778 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.83 37.15 0.33 -1.48 16 2 C -0.10 -1.13 2.80 -90.62 -0.25 -1.38 16 3 C -0.14 -1.41 9.19 37.16 0.34 -1.06 16 4 C -0.12 -1.47 4.39 -26.73 -0.12 -1.59 16 5 C 0.13 2.03 2.08 -67.93 -0.14 1.89 16 6 H 0.09 1.64 5.91 -51.93 -0.31 1.33 16 7 C 0.14 2.52 5.46 -4.04 -0.02 2.50 16 8 N -0.73 -16.81 5.43 -59.91 -0.33 -17.14 16 9 C -0.26 -6.68 9.99 -15.06 -0.15 -6.84 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 12 N -0.92 -26.79 13.06 55.49 0.72 -26.07 16 13 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.72 -10.23 4.24 -53.81 -0.23 -10.46 16 18 C 0.52 7.49 7.00 -10.99 -0.08 7.42 16 19 O -0.53 -9.05 15.52 5.55 0.09 -8.96 16 20 C -0.03 -0.34 2.91 -92.78 -0.27 -0.61 16 21 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.10 -0.98 4.67 -26.45 -0.12 -1.10 16 23 C -0.12 -0.97 5.90 -26.46 -0.16 -1.13 16 24 C -0.03 -0.36 6.30 -27.72 -0.17 -0.54 16 25 C -0.01 -0.15 7.11 -83.13 -0.59 -0.74 16 26 N -0.27 -5.08 12.40 33.16 0.41 -4.67 16 27 N -0.05 -0.98 13.40 60.35 0.81 -0.18 16 28 N -0.36 -6.19 6.76 33.39 0.23 -5.96 16 29 H 0.45 7.53 6.78 -190.07 -1.29 6.24 16 30 C -0.03 -0.43 6.37 -82.49 -0.53 -0.96 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 34 H 0.08 0.96 6.48 -51.93 -0.34 0.63 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.04 0.71 6.72 -51.93 -0.35 0.36 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 9.41 7.33 -40.82 -0.30 9.11 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.39 5.28 6.45 -40.82 -0.26 5.02 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.01 7.74 -51.93 -0.40 0.61 16 47 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -32.10 394.35 -8.46 -40.56 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -9.05 Total: 15.81 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.03 Total: -5.81 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 1.62 Total: -64.48 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.10 -8.46 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732469979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.238 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds