Wall clock time and date at job start Tue Mar 31 2020 20:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.53005 * 109.47461 * 119.99897 * 2 1 3 5 5 C 1.53001 * 109.46962 * 65.29269 * 4 2 1 6 6 H 1.08998 * 109.46941 * 305.95053 * 5 4 2 7 7 C 1.53004 * 109.46832 * 65.94454 * 5 4 2 8 8 N 1.46505 * 109.46775 * 174.99714 * 7 5 4 9 9 C 1.36930 * 119.99878 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00168 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00032 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00059 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00161 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47053 * 89.99820 * 13 11 9 15 15 H 1.48501 * 109.47129 * 209.99867 * 13 11 9 16 16 H 1.48501 * 109.46815 * 329.99770 * 13 11 9 17 17 N 1.46490 * 109.47021 * 185.94787 * 5 4 2 18 18 C 1.34773 * 120.00285 * 81.54205 * 17 5 4 19 19 O 1.21283 * 119.99985 * 5.07549 * 18 17 5 20 20 C 1.50696 * 120.00283 * 185.07417 * 18 17 5 21 21 H 1.09000 * 109.69012 * 59.46060 * 20 18 17 22 22 C 1.53442 * 109.69618 * 180.02562 * 20 18 17 23 23 C 1.53101 * 109.55397 * 169.43698 * 22 20 18 24 24 C 1.53425 * 109.58264 * 289.94539 * 23 22 20 25 25 C 1.50591 * 108.33486 * 49.82893 * 24 23 22 26 26 N 1.32906 * 129.16770 * 163.47463 * 25 24 23 27 27 N 1.29016 * 108.64026 * 180.10781 * 26 25 24 28 28 N 1.29113 * 110.25846 * 359.96979 * 27 26 25 29 29 H 0.96996 * 126.00994 * 179.97438 * 28 27 26 30 30 C 1.34396 * 107.98320 * 359.93446 * 28 27 26 31 31 H 1.09000 * 109.47562 * 54.59624 * 1 2 3 32 32 H 1.09003 * 109.47297 * 294.60106 * 1 2 3 33 33 H 1.08999 * 109.47200 * 174.60155 * 1 2 3 34 34 H 1.08997 * 109.47145 * 240.00206 * 2 1 3 35 35 H 1.08997 * 109.46955 * 60.00090 * 3 2 1 36 36 H 1.09000 * 109.46770 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47111 * 299.99832 * 3 2 1 38 38 H 1.08998 * 109.47162 * 185.29684 * 4 2 1 39 39 H 1.09003 * 109.46758 * 305.29840 * 4 2 1 40 40 H 1.08990 * 109.47611 * 294.99992 * 7 5 4 41 41 H 1.09003 * 109.46700 * 55.00559 * 7 5 4 42 42 H 0.97001 * 119.99651 * 0.02562 * 8 7 5 43 43 H 0.97002 * 120.00443 * 180.02562 * 12 11 9 44 44 H 0.97000 * 120.00045 * 261.54481 * 17 5 4 45 45 H 1.08994 * 109.45455 * 289.46619 * 22 20 18 46 46 H 1.08997 * 109.45221 * 49.43166 * 22 20 18 47 47 H 1.09003 * 109.45799 * 49.98346 * 23 22 20 48 48 H 1.09005 * 109.45153 * 169.91368 * 23 22 20 49 49 H 1.08998 * 109.68795 * 169.54055 * 24 23 22 50 50 H 1.09002 * 109.69158 * 290.07850 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6416 -2.1970 1.1845 6 1 0.5656 -2.2764 1.0297 7 6 2.3750 -2.8728 0.0241 8 7 2.0868 -4.3092 0.0347 9 6 2.6371 -5.1249 -0.9176 10 1 3.2838 -4.7094 -1.6763 11 6 2.3637 -6.4857 -0.9079 12 7 1.5752 -6.9920 0.0163 13 14 3.1149 -7.5987 -2.2066 14 1 4.4226 -8.1103 -1.7237 15 1 2.2024 -8.7407 -2.4678 16 1 3.3168 -6.8295 -3.4608 17 7 2.0041 -2.8563 2.4415 18 6 1.1965 -2.7504 3.5153 19 8 0.1265 -2.1880 3.4163 20 6 1.6229 -3.3309 4.8390 21 1 2.5565 -2.8683 5.1592 22 6 0.5334 -3.0783 5.8895 23 6 0.8416 -3.8874 7.1521 24 6 0.6345 -5.3811 6.8691 25 6 1.3731 -5.7304 5.6041 26 7 1.7231 -6.9252 5.1391 27 7 2.3448 -6.7662 4.0199 28 7 2.4200 -5.5116 3.7245 29 1 2.8396 -5.1357 2.9349 30 6 1.8137 -4.8179 4.7030 31 1 -0.3634 0.5953 -0.8376 32 1 -0.3634 0.4278 0.9344 33 1 -0.3633 -1.0231 -0.0967 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 3.1259 -0.6398 1.2979 39 1 1.6013 -0.2651 2.1367 40 1 2.0385 -2.4417 -0.9187 41 1 3.4483 -2.7167 0.1326 42 1 1.5057 -4.6822 0.7159 43 1 1.3844 -7.9431 0.0234 44 1 2.8254 -3.3689 2.5010 45 1 0.5058 -2.0170 6.1360 46 1 -0.4337 -3.3836 5.4900 47 1 1.8756 -3.7145 7.4508 48 1 0.1748 -3.5744 7.9556 49 1 1.0271 -5.9698 7.6982 50 1 -0.4284 -5.5871 6.7433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732469979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:20 Heat of formation + Delta-G solvation = 20.575113 kcal Electronic energy + Delta-G solvation = -30804.845051 eV Core-core repulsion = 26867.409366 eV Total energy + Delta-G solvation = -3937.435685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.53845 -41.22828 -38.86326 -37.52872 -36.41113 -35.42847 -34.75980 -33.01531 -31.64701 -31.09840 -30.29917 -28.01349 -27.23831 -25.88049 -24.66140 -24.21565 -23.64067 -22.69169 -21.89256 -20.64553 -20.47373 -19.36773 -19.12299 -18.18231 -17.49165 -17.18658 -16.79070 -16.46577 -16.08460 -15.65449 -15.35619 -15.12575 -15.09210 -14.78392 -14.73643 -14.56316 -14.37440 -14.25576 -13.81997 -13.41801 -13.18809 -13.13503 -12.96241 -12.82078 -12.65160 -12.56607 -12.37906 -12.25286 -12.20011 -12.05614 -11.96712 -11.93291 -11.80047 -11.64495 -11.53626 -11.37647 -11.32823 -11.04308 -10.88080 -10.12468 -9.90542 -9.04435 -7.95820 -5.26025 0.49114 1.35498 1.45379 1.45877 1.52003 1.54196 1.72113 2.04857 2.52992 3.23749 3.34203 3.39431 3.54993 3.68960 3.77099 3.89500 3.97133 4.03170 4.13710 4.16269 4.21120 4.33234 4.35470 4.39700 4.50657 4.54889 4.66296 4.74368 4.82052 4.86122 4.93131 4.98001 5.00938 5.03736 5.04104 5.11047 5.13355 5.16707 5.21009 5.34944 5.36139 5.41765 5.47765 5.49057 5.51304 5.55328 5.76807 6.21586 6.32922 7.03776 7.31109 7.42043 8.01897 8.25526 9.24381 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007049 B = 0.005742 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3971.252826 B = 4875.067346 C = 8408.483191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.106 4.106 5 C 0.143 3.857 6 H 0.064 0.936 7 C 0.142 3.858 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.063 4.063 12 N -0.954 5.954 13 Si 0.964 3.036 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.270 1.270 17 N -0.716 5.716 18 C 0.514 3.486 19 O -0.554 6.554 20 C -0.022 4.022 21 H 0.155 0.845 22 C -0.094 4.094 23 C -0.106 4.106 24 C -0.036 4.036 25 C -0.017 4.017 26 N -0.296 5.296 27 N -0.105 5.105 28 N -0.363 5.363 29 H 0.447 0.553 30 C -0.019 4.019 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.371 0.629 43 H 0.247 0.753 44 H 0.396 0.604 45 H 0.103 0.897 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.099 0.901 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 17.122 13.139 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.145 4.145 5 C 0.039 3.961 6 H 0.082 0.918 7 C 0.016 3.984 8 N -0.386 5.386 9 C -0.378 4.378 10 H 0.096 0.904 11 C -0.256 4.256 12 N -0.603 5.603 13 Si 0.794 3.206 14 H -0.215 1.215 15 H -0.232 1.232 16 H -0.195 1.195 17 N -0.367 5.367 18 C 0.301 3.699 19 O -0.432 6.432 20 C -0.046 4.046 21 H 0.172 0.828 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.075 4.075 25 C -0.158 4.158 26 N -0.161 5.161 27 N -0.083 5.083 28 N -0.084 5.084 29 H 0.295 0.705 30 C -0.156 4.156 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.203 0.797 43 H 0.056 0.944 44 H 0.232 0.768 45 H 0.121 0.879 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.127 0.873 49 H 0.117 0.883 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.959 15.961 12.532 20.387 hybrid contribution 0.330 -0.613 -1.396 1.560 sum 2.289 15.347 11.136 19.100 Atomic orbital electron populations 1.21837 0.95809 1.00760 1.01825 1.21130 0.95540 0.97245 0.97629 1.21771 1.01287 0.94426 1.02117 1.21879 1.01834 0.92039 0.98771 1.21234 0.99542 0.92930 0.82428 0.91829 1.21202 0.97613 0.83771 0.95828 1.42511 1.58329 1.02913 1.34831 1.19500 1.22413 0.89301 1.06566 0.90351 1.25427 1.01066 0.98445 1.00703 1.69782 1.41660 1.11953 1.36935 0.85295 0.77188 0.78588 0.79542 1.21540 1.23163 1.19466 1.46162 1.25435 1.53491 1.11623 1.20852 0.83893 0.79221 0.85983 1.90692 1.22520 1.44813 1.85179 1.20261 1.04908 0.85606 0.93782 0.82816 1.21512 0.95862 1.02730 0.93183 1.21663 1.04392 0.91225 0.97125 1.20234 0.98835 0.98353 0.90101 1.22451 1.04331 0.87726 1.01319 1.74811 1.12603 1.24813 1.03879 1.78726 1.19788 0.98546 1.11290 1.44922 1.38289 1.05907 1.19269 0.70493 1.21910 1.04373 0.97276 0.92008 0.91811 0.92851 0.94724 0.91194 0.92460 0.91905 0.92076 0.90078 0.91613 0.94264 0.93988 0.79708 0.94427 0.76833 0.87857 0.92416 0.89580 0.87253 0.88277 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.83 71.98 0.64 -2.82 16 2 C -0.10 -2.09 2.80 -10.79 -0.03 -2.12 16 3 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 4 C -0.11 -2.44 4.39 30.60 0.13 -2.30 16 5 C 0.14 4.28 2.08 45.00 0.09 4.38 16 6 H 0.06 2.31 5.91 -2.39 -0.01 2.30 16 7 C 0.14 4.97 5.46 86.38 0.47 5.44 16 8 N -0.74 -34.30 5.43 -343.45 -1.87 -36.17 16 9 C -0.25 -12.86 9.99 84.03 0.84 -12.02 16 10 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 11 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 12 N -0.95 -57.35 13.06 21.65 0.28 -57.07 16 13 Si 0.96 45.82 29.55 68.60 2.03 47.85 16 14 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 N -0.72 -19.91 4.24 -442.55 -1.88 -21.79 16 18 C 0.51 14.41 7.00 87.66 0.61 15.02 16 19 O -0.55 -18.87 15.52 -3.04 -0.05 -18.92 16 20 C -0.02 -0.48 2.91 -12.19 -0.04 -0.51 16 21 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 22 C -0.09 -1.67 4.67 30.78 0.14 -1.52 16 23 C -0.11 -1.36 5.90 30.77 0.18 -1.18 16 24 C -0.04 -0.71 6.30 29.96 0.19 -0.52 16 25 C -0.02 -0.51 7.11 41.75 0.30 -0.21 16 26 N -0.30 -11.47 12.40 -48.99 -0.61 -12.08 16 27 N -0.11 -4.42 13.40 37.02 0.50 -3.92 16 28 N -0.36 -12.74 6.76 -48.27 -0.33 -13.07 16 29 H 0.45 15.46 6.78 -219.68 -1.49 13.97 16 30 C -0.02 -0.54 6.37 41.50 0.26 -0.28 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 0.98 6.71 -2.39 -0.02 0.97 16 34 H 0.07 1.63 6.48 -2.39 -0.02 1.62 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.55 8.08 -2.39 -0.02 1.54 16 40 H 0.04 1.40 6.72 -2.39 -0.02 1.39 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.37 18.78 7.33 -92.71 -0.68 18.10 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.40 10.40 6.45 -92.71 -0.60 9.81 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.34 7.74 -2.39 -0.02 1.32 16 47 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 48 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -72.53 394.35 1.22 -71.32 By element: Atomic # 1 Polarization: 48.96 SS G_CDS: -1.79 Total: 47.17 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.93 Total: -3.32 kcal Atomic # 7 Polarization: -140.20 SS G_CDS: -3.90 Total: -144.10 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.53 1.22 -71.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732469979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.892 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds