Wall clock time and date at job start Tue Mar 31 2020 20:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00261 * 2 1 3 5 5 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 6 6 C 1.53002 * 109.47143 * 304.99644 * 4 2 1 7 7 N 1.46499 * 109.47138 * 174.99644 * 6 4 2 8 8 C 1.34777 * 119.99908 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00049 * 180.02562 * 8 7 6 11 11 H 1.09001 * 107.87813 * 296.54875 * 10 8 7 12 12 C 1.50953 * 108.02755 * 53.06312 * 10 8 7 13 13 C 1.53672 * 110.95359 * 194.29270 * 12 10 8 14 14 C 1.51893 * 106.90485 * 280.90812 * 13 12 10 15 15 N 1.29894 * 127.80522 * 245.29731 * 14 13 12 16 16 N 1.29030 * 109.21716 * 179.62412 * 15 14 13 17 17 C 1.30973 * 109.71161 * 0.05983 * 16 15 14 18 18 N 1.34603 * 124.56810 * 65.08270 * 14 13 12 19 19 C 1.47490 * 125.03617 * 0.53245 * 18 14 13 20 20 C 1.50859 * 108.02823 * 179.97438 * 10 8 7 21 21 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 22 22 C 1.36937 * 119.99708 * 84.99749 * 21 4 2 23 23 H 1.07996 * 120.00283 * 0.02562 * 22 21 4 24 24 C 1.38815 * 119.99959 * 179.97438 * 22 21 4 25 25 N 1.31622 * 119.99483 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00333 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46651 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46828 * 120.00285 * 26 24 22 29 29 H 1.48497 * 109.47433 * 240.00454 * 26 24 22 30 30 H 1.09006 * 109.46596 * 300.00151 * 1 2 3 31 31 H 1.09004 * 109.47031 * 59.99400 * 1 2 3 32 32 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46818 * 240.00299 * 2 1 3 34 34 H 1.08993 * 109.47331 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46933 * 300.00305 * 3 2 1 36 36 H 1.09002 * 109.46801 * 60.00288 * 3 2 1 37 37 H 1.09000 * 109.47089 * 294.99987 * 6 4 2 38 38 H 1.09000 * 109.47173 * 55.00063 * 6 4 2 39 39 H 0.97006 * 120.00082 * 0.02562 * 7 6 4 40 40 H 1.08993 * 109.18645 * 314.67530 * 12 10 8 41 41 H 1.09003 * 109.17933 * 73.91777 * 12 10 8 42 42 H 1.09008 * 109.96425 * 161.56741 * 13 12 10 43 43 H 1.08991 * 110.03985 * 40.30137 * 13 12 10 44 44 H 1.08000 * 126.61006 * 180.08844 * 17 16 15 45 45 H 1.09001 * 109.93373 * 174.63818 * 19 18 14 46 46 H 1.08999 * 109.93516 * 53.42332 * 19 18 14 47 47 H 1.08999 * 109.14815 * 285.98246 * 20 10 8 48 48 H 1.09001 * 109.14468 * 45.19455 * 20 10 8 49 49 H 0.97000 * 120.00117 * 265.00154 * 21 4 2 50 50 H 0.97000 * 119.99481 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.4301 -0.0763 2.4953 7 7 1.8228 -0.8398 3.6823 8 6 1.3989 -0.4543 4.9022 9 8 0.6918 0.5244 5.0172 10 6 1.8033 -1.2394 6.1234 11 1 1.3798 -2.2397 6.0335 12 6 3.3074 -1.3675 6.1193 13 6 3.7704 -2.4387 7.1192 14 6 3.7290 -1.8031 8.4981 15 7 4.7279 -1.5531 9.2899 16 7 4.2864 -1.0007 10.3692 17 6 2.9839 -0.8801 10.3028 18 7 2.6064 -1.3898 9.1152 19 6 1.2450 -1.4983 8.5582 20 6 1.1858 -0.5770 7.3299 21 7 1.6524 -2.1329 1.1905 22 6 2.4345 -3.0301 0.5133 23 1 3.3372 -2.6971 0.0228 24 6 2.0676 -4.3677 0.4581 25 7 0.9677 -4.7735 1.0564 26 14 3.1347 -5.5917 -0.4651 27 1 4.3070 -4.8879 -1.0444 28 1 3.6032 -6.6449 0.4713 29 1 2.3427 -6.2154 -1.5554 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.7898 0.9486 2.5870 38 1 0.3436 -0.0736 2.4082 39 1 2.3880 -1.6228 3.5903 40 1 3.6407 -1.6435 5.1190 41 1 3.7492 -0.4089 6.3914 42 1 4.7876 -2.7522 6.8844 43 1 3.0993 -3.2968 7.0846 44 1 2.3373 -0.4539 11.0556 45 1 0.5135 -1.1768 9.2996 46 1 1.0461 -2.5279 8.2607 47 1 1.7257 0.3445 7.5474 48 1 0.1445 -0.3386 7.1131 49 1 0.8418 -2.4320 1.6313 50 1 0.7111 -5.7081 1.0175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732562438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:05 Heat of formation + Delta-G solvation = 38.826148 kcal Electronic energy + Delta-G solvation = -29953.382361 eV Core-core repulsion = 26016.738101 eV Total energy + Delta-G solvation = -3936.644260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.43753 -40.11074 -37.73919 -36.81583 -34.60497 -33.75709 -33.32969 -32.25314 -30.52411 -30.03202 -28.00734 -26.74628 -26.62518 -24.56111 -23.91368 -22.62779 -22.57212 -21.72652 -20.43270 -19.87472 -18.73838 -17.76883 -17.49250 -16.96338 -16.23478 -16.07742 -15.37156 -15.28369 -14.99250 -14.77520 -14.48216 -14.26837 -13.86443 -13.57697 -13.36772 -13.33648 -13.15942 -12.94870 -12.69697 -12.55538 -12.28332 -12.12870 -11.92408 -11.58770 -11.48607 -11.23025 -11.16928 -11.08028 -11.04828 -10.94945 -10.71789 -10.48172 -10.42027 -10.33998 -10.22784 -9.87420 -9.75253 -9.61650 -9.30172 -9.01984 -8.69596 -7.11446 -5.90753 -3.20515 1.72172 2.30278 2.74143 2.79579 3.32993 3.35704 3.41402 3.42604 3.97659 4.18328 4.29050 4.37566 4.47012 4.51412 4.61550 4.75530 4.82131 5.01982 5.18327 5.20605 5.21420 5.30384 5.34021 5.43339 5.50395 5.56810 5.58445 5.68774 5.69074 5.74524 5.84213 5.85508 5.90220 5.90540 6.02130 6.04223 6.09808 6.27205 6.31353 6.38206 6.54561 6.64967 6.68258 6.78749 6.93049 6.98919 7.59222 7.80151 8.26768 8.42326 8.60733 9.39445 9.93214 10.29171 11.30982 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003177 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.349853 B = 8811.586355 C =10353.905585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.109 3.891 7 N -0.709 5.709 8 C 0.512 3.488 9 O -0.555 6.555 10 C -0.111 4.111 11 H 0.101 0.899 12 C -0.113 4.113 13 C -0.032 4.032 14 C 0.180 3.820 15 N -0.297 5.297 16 N -0.306 5.306 17 C 0.146 3.854 18 N -0.469 5.469 19 C 0.104 3.896 20 C -0.117 4.117 21 N -0.720 5.720 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 7.688 11.795 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.015 4.015 7 N -0.361 5.361 8 C 0.297 3.703 9 O -0.434 6.434 10 C -0.132 4.132 11 H 0.119 0.881 12 C -0.151 4.151 13 C -0.071 4.071 14 C -0.088 4.088 15 N -0.137 5.137 16 N -0.146 5.146 17 C -0.142 4.142 18 N -0.159 5.159 19 C -0.018 4.018 20 C -0.155 4.155 21 N -0.361 5.361 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.233 0.767 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.121 0.879 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.118 8.363 12.310 14.882 hybrid contribution -0.988 -1.252 -0.975 1.870 sum -1.106 7.111 11.335 13.426 Atomic orbital electron populations 1.21794 0.95836 1.02314 0.99942 1.21736 0.96023 0.94621 1.00974 1.21912 1.00554 0.97179 1.00958 1.20514 0.97145 0.85908 0.90470 0.92890 1.21844 1.00474 0.94621 0.84542 1.46048 1.52320 1.31859 1.05823 1.20449 0.80115 0.84946 0.84766 1.90665 1.38358 1.27742 1.86619 1.20679 0.97237 1.01416 0.93877 0.88077 1.21369 0.93232 0.99875 1.00658 1.20582 1.05117 0.96918 0.84501 1.24925 0.82718 1.02281 0.98896 1.74240 1.24697 1.15574 0.99164 1.74516 1.07163 1.16539 1.16343 1.26309 0.95049 1.03071 0.89779 1.46364 1.09632 1.44791 1.15159 1.22560 0.79700 1.02583 0.96938 1.21489 1.04047 0.98261 0.91698 1.42453 1.28836 1.01164 1.63674 1.19252 1.03605 0.88472 1.25942 0.91089 1.24710 0.97668 0.97151 1.00927 1.69667 1.24494 1.15608 1.47965 0.86177 0.79559 0.81544 0.79228 1.20562 1.21870 1.21935 0.93466 0.94146 0.91609 0.90750 0.93183 0.93503 0.93071 0.91770 0.91266 0.75261 0.89053 0.90836 0.87308 0.88867 0.76670 0.87524 0.88180 0.90451 0.87921 0.78097 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.60 37.16 0.32 -1.93 16 2 C -0.11 -1.79 2.88 -90.62 -0.26 -2.05 16 3 C -0.15 -1.96 8.95 37.16 0.33 -1.63 16 4 C 0.17 2.91 2.22 -67.93 -0.15 2.76 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.70 4.53 -4.04 -0.02 1.68 16 7 N -0.71 -10.28 5.12 -60.29 -0.31 -10.59 16 8 C 0.51 7.11 7.12 -10.98 -0.08 7.03 16 9 O -0.55 -9.39 15.53 5.56 0.09 -9.31 16 10 C -0.11 -1.11 1.97 -93.87 -0.19 -1.29 16 11 H 0.10 0.91 7.67 -51.93 -0.40 0.51 16 12 C -0.11 -1.08 4.88 -27.41 -0.13 -1.22 16 13 C -0.03 -0.29 6.02 -26.94 -0.16 -0.45 16 14 C 0.18 2.07 7.03 -155.74 -1.09 0.98 16 15 N -0.30 -4.38 12.23 32.85 0.40 -3.98 16 16 N -0.31 -4.31 12.24 29.60 0.36 -3.95 16 17 C 0.15 1.44 12.83 -90.35 -1.16 0.28 16 18 N -0.47 -4.37 2.72 -114.23 -0.31 -4.68 16 19 C 0.10 0.66 6.53 -3.16 -0.02 0.64 16 20 C -0.12 -1.02 4.49 -27.47 -0.12 -1.14 16 21 N -0.72 -15.32 4.01 -53.42 -0.21 -15.53 16 22 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -25.48 13.06 55.49 0.72 -24.75 16 26 Si 0.90 20.78 29.55 -169.99 -5.02 15.75 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H 0.05 0.70 6.24 -51.93 -0.32 0.38 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.21 7.75 -51.93 -0.40 0.81 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.65 6.68 -51.93 -0.35 0.30 16 37 H 0.06 0.96 6.81 -51.93 -0.35 0.61 16 38 H 0.07 1.16 6.06 -51.93 -0.31 0.85 16 39 H 0.41 5.97 6.91 -40.82 -0.28 5.69 16 40 H 0.09 0.88 6.58 -51.93 -0.34 0.54 16 41 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.09 0.71 7.89 -51.93 -0.41 0.30 16 44 H 0.22 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.11 0.40 8.13 -51.93 -0.42 -0.03 16 46 H 0.10 0.53 7.87 -51.93 -0.41 0.12 16 47 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 48 H 0.10 0.95 7.41 -51.93 -0.38 0.56 16 49 H 0.38 8.95 7.80 -40.82 -0.32 8.63 16 50 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -32.13 392.03 -9.39 -41.52 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.04 Total: 12.32 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.98 Total: -2.71 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.66 Total: -63.48 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.13 -9.39 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732562438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.345 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds