Wall clock time and date at job start Tue Mar 31 2020 20:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 C 1.52997 * 109.47341 * 120.00261 * 2 1 3 5 5 H 1.09004 * 109.47261 * 184.99781 * 4 2 1 6 6 C 1.53002 * 109.47143 * 304.99644 * 4 2 1 7 7 N 1.46499 * 109.47138 * 174.99644 * 6 4 2 8 8 C 1.34777 * 119.99908 * 180.02562 * 7 6 4 9 9 O 1.21282 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00049 * 180.02562 * 8 7 6 11 11 H 1.09001 * 107.87813 * 296.54875 * 10 8 7 12 12 C 1.50953 * 108.02755 * 53.06312 * 10 8 7 13 13 C 1.53672 * 110.95359 * 194.29270 * 12 10 8 14 14 C 1.51893 * 106.90485 * 280.90812 * 13 12 10 15 15 N 1.29894 * 127.80522 * 245.29731 * 14 13 12 16 16 N 1.29030 * 109.21716 * 179.62412 * 15 14 13 17 17 C 1.30973 * 109.71161 * 0.05983 * 16 15 14 18 18 N 1.34603 * 124.56810 * 65.08270 * 14 13 12 19 19 C 1.47490 * 125.03617 * 0.53245 * 18 14 13 20 20 C 1.50859 * 108.02823 * 179.97438 * 10 8 7 21 21 N 1.46506 * 109.47289 * 64.99653 * 4 2 1 22 22 C 1.36937 * 119.99708 * 84.99749 * 21 4 2 23 23 H 1.07996 * 120.00283 * 0.02562 * 22 21 4 24 24 C 1.38815 * 119.99959 * 179.97438 * 22 21 4 25 25 N 1.31622 * 119.99483 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00333 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46651 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46828 * 120.00285 * 26 24 22 29 29 H 1.48497 * 109.47433 * 240.00454 * 26 24 22 30 30 H 1.09006 * 109.46596 * 300.00151 * 1 2 3 31 31 H 1.09004 * 109.47031 * 59.99400 * 1 2 3 32 32 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46818 * 240.00299 * 2 1 3 34 34 H 1.08993 * 109.47331 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46933 * 300.00305 * 3 2 1 36 36 H 1.09002 * 109.46801 * 60.00288 * 3 2 1 37 37 H 1.09000 * 109.47089 * 294.99987 * 6 4 2 38 38 H 1.09000 * 109.47173 * 55.00063 * 6 4 2 39 39 H 0.97006 * 120.00082 * 0.02562 * 7 6 4 40 40 H 1.08993 * 109.18645 * 314.67530 * 12 10 8 41 41 H 1.09003 * 109.17933 * 73.91777 * 12 10 8 42 42 H 1.09008 * 109.96425 * 161.56741 * 13 12 10 43 43 H 1.08991 * 110.03985 * 40.30137 * 13 12 10 44 44 H 1.08000 * 126.61006 * 180.08844 * 17 16 15 45 45 H 1.09001 * 109.93373 * 174.63818 * 19 18 14 46 46 H 1.08999 * 109.93516 * 53.42332 * 19 18 14 47 47 H 1.08999 * 109.14815 * 285.98246 * 20 10 8 48 48 H 1.09001 * 109.14468 * 45.19455 * 20 10 8 49 49 H 0.97000 * 120.00117 * 265.00154 * 21 4 2 50 50 H 0.97000 * 119.99481 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1264 -0.6444 1.2951 6 6 1.4301 -0.0763 2.4953 7 7 1.8228 -0.8398 3.6823 8 6 1.3989 -0.4543 4.9022 9 8 0.6918 0.5244 5.0172 10 6 1.8033 -1.2394 6.1234 11 1 1.3798 -2.2397 6.0335 12 6 3.3074 -1.3675 6.1193 13 6 3.7704 -2.4387 7.1192 14 6 3.7290 -1.8031 8.4981 15 7 4.7279 -1.5531 9.2899 16 7 4.2864 -1.0007 10.3692 17 6 2.9839 -0.8801 10.3028 18 7 2.6064 -1.3898 9.1152 19 6 1.2450 -1.4983 8.5582 20 6 1.1858 -0.5770 7.3299 21 7 1.6524 -2.1329 1.1905 22 6 2.4345 -3.0301 0.5133 23 1 3.3372 -2.6971 0.0228 24 6 2.0676 -4.3677 0.4581 25 7 0.9677 -4.7735 1.0564 26 14 3.1347 -5.5917 -0.4651 27 1 4.3070 -4.8879 -1.0444 28 1 3.6032 -6.6449 0.4713 29 1 2.3427 -6.2154 -1.5554 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.7898 0.9486 2.5870 38 1 0.3436 -0.0736 2.4082 39 1 2.3880 -1.6228 3.5903 40 1 3.6407 -1.6435 5.1190 41 1 3.7492 -0.4089 6.3914 42 1 4.7876 -2.7522 6.8844 43 1 3.0993 -3.2968 7.0846 44 1 2.3373 -0.4539 11.0556 45 1 0.5135 -1.1768 9.2996 46 1 1.0461 -2.5279 8.2607 47 1 1.7257 0.3445 7.5474 48 1 0.1445 -0.3386 7.1131 49 1 0.8418 -2.4320 1.6313 50 1 0.7111 -5.7081 1.0175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732562438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:04 Heat of formation + Delta-G solvation = 19.979103 kcal Electronic energy + Delta-G solvation = -29954.199630 eV Core-core repulsion = 26016.738101 eV Total energy + Delta-G solvation = -3937.461530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.24455 -41.20628 -39.02108 -37.79611 -35.50819 -35.09535 -34.84701 -33.07294 -32.18598 -30.89334 -29.21614 -27.96126 -27.65663 -25.66552 -25.22759 -24.02935 -23.39733 -22.68210 -21.19386 -20.94267 -20.01672 -19.26026 -18.50812 -18.07355 -17.44089 -16.97587 -16.69263 -16.26629 -16.03270 -15.73893 -15.66919 -15.44507 -14.99621 -14.94357 -14.86186 -14.40596 -14.29920 -13.83475 -13.71620 -13.62480 -13.36471 -13.13228 -12.89275 -12.78863 -12.66020 -12.61962 -12.47536 -12.40836 -12.20905 -12.03826 -11.95989 -11.87927 -11.84453 -11.50492 -11.32839 -11.19911 -11.10303 -10.90536 -10.69530 -10.19130 -9.92883 -8.93957 -7.87912 -5.14848 0.96425 1.50559 1.54339 1.60793 1.64062 1.66202 1.90015 2.27463 2.60604 3.22828 3.44650 3.50125 3.55995 3.64262 3.83342 3.90157 3.91033 3.94568 4.08086 4.23489 4.24822 4.29022 4.35759 4.42847 4.44306 4.46256 4.51050 4.55146 4.75897 4.76538 4.87540 4.88470 4.94546 4.98571 5.05068 5.09855 5.10274 5.15459 5.17979 5.24466 5.28230 5.32619 5.50337 5.57706 5.63694 5.69553 6.00490 6.33367 6.63248 7.27518 7.42079 7.76285 8.13550 8.39222 9.34510 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003177 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.349853 B = 8811.586355 C =10353.905585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.054 0.946 6 C 0.119 3.881 7 N -0.711 5.711 8 C 0.509 3.491 9 O -0.585 6.585 10 C -0.102 4.102 11 H 0.119 0.881 12 C -0.103 4.103 13 C -0.026 4.026 14 C 0.177 3.823 15 N -0.345 5.345 16 N -0.358 5.358 17 C 0.162 3.838 18 N -0.466 5.466 19 C 0.108 3.892 20 C -0.110 4.110 21 N -0.723 5.723 22 C -0.228 4.228 23 H 0.073 0.927 24 C -0.063 4.063 25 N -0.962 5.962 26 Si 0.958 3.042 27 H -0.270 1.270 28 H -0.295 1.295 29 H -0.303 1.303 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.411 0.589 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.259 0.741 45 H 0.142 0.858 46 H 0.118 0.882 47 H 0.058 0.942 48 H 0.101 0.899 49 H 0.375 0.625 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 8.311 12.357 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.072 0.928 6 C -0.005 4.005 7 N -0.362 5.362 8 C 0.297 3.703 9 O -0.466 6.466 10 C -0.123 4.123 11 H 0.137 0.863 12 C -0.142 4.142 13 C -0.066 4.066 14 C -0.093 4.093 15 N -0.184 5.184 16 N -0.197 5.197 17 C -0.127 4.127 18 N -0.156 5.156 19 C -0.013 4.013 20 C -0.149 4.149 21 N -0.363 5.363 22 C -0.360 4.360 23 H 0.091 0.909 24 C -0.256 4.256 25 N -0.612 5.612 26 Si 0.789 3.211 27 H -0.195 1.195 28 H -0.223 1.223 29 H -0.231 1.231 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.275 0.725 45 H 0.160 0.840 46 H 0.136 0.864 47 H 0.077 0.923 48 H 0.119 0.881 49 H 0.207 0.793 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.556 9.025 12.862 15.722 hybrid contribution -0.878 -1.326 -1.176 1.978 sum -1.433 7.699 11.686 14.067 Atomic orbital electron populations 1.21719 0.95673 1.00594 1.01236 1.21630 0.96104 0.96280 0.99030 1.21829 1.00980 0.94914 1.02081 1.20636 0.97198 0.83967 0.91884 0.92832 1.21659 0.99578 0.95042 0.84252 1.46073 1.52383 1.31781 1.05955 1.21116 0.79175 0.84664 0.85380 1.90649 1.39736 1.29201 1.87062 1.20734 0.97438 1.01659 0.92501 0.86304 1.21253 0.92831 0.99330 1.00774 1.20642 1.05747 0.97087 0.83119 1.25218 0.83015 1.01859 0.99225 1.74129 1.26690 1.17346 1.00276 1.74406 1.09568 1.18619 1.17065 1.27107 0.94364 1.00964 0.90274 1.46538 1.10181 1.44064 1.14832 1.22815 0.78771 1.03109 0.96603 1.21411 1.03317 0.97979 0.92158 1.42499 1.28030 1.02607 1.63164 1.19517 1.03276 0.88835 1.24353 0.90868 1.25279 0.98912 0.98741 1.02621 1.69790 1.26149 1.15278 1.50024 0.85309 0.78390 0.79676 0.77745 1.19509 1.22257 1.23146 0.92486 0.92539 0.94765 0.93016 0.92480 0.92125 0.92211 0.90740 0.92419 0.75214 0.89080 0.92443 0.87291 0.86747 0.72483 0.84000 0.86373 0.92279 0.88112 0.79299 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.60 71.98 0.62 -3.56 16 2 C -0.11 -3.38 2.88 -10.79 -0.03 -3.41 16 3 C -0.14 -3.39 8.95 71.98 0.64 -2.74 16 4 C 0.17 5.75 2.22 44.99 0.10 5.85 16 5 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 6 C 0.12 3.60 4.53 86.38 0.39 3.99 16 7 N -0.71 -20.07 5.12 -463.05 -2.37 -22.44 16 8 C 0.51 13.66 7.12 87.66 0.62 14.29 16 9 O -0.59 -19.37 15.53 -3.04 -0.05 -19.41 16 10 C -0.10 -1.88 1.97 -12.90 -0.03 -1.90 16 11 H 0.12 1.82 7.67 -2.39 -0.02 1.80 16 12 C -0.10 -1.88 4.88 30.15 0.15 -1.73 16 13 C -0.03 -0.45 6.02 30.46 0.18 -0.26 16 14 C 0.18 3.88 7.03 138.83 0.98 4.86 16 15 N -0.35 -10.22 12.23 -49.99 -0.61 -10.83 16 16 N -0.36 -9.96 12.24 -60.28 -0.74 -10.70 16 17 C 0.16 2.86 12.83 180.25 2.31 5.17 16 18 N -0.47 -7.63 2.72 -515.31 -1.40 -9.03 16 19 C 0.11 0.99 6.53 86.41 0.56 1.55 16 20 C -0.11 -1.70 4.49 30.12 0.14 -1.56 16 21 N -0.72 -30.72 4.01 -322.92 -1.30 -32.01 16 22 C -0.23 -11.06 9.93 84.03 0.83 -10.23 16 23 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 24 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 25 N -0.96 -53.26 13.06 21.65 0.28 -52.98 16 26 Si 0.96 42.80 29.55 68.60 2.03 44.83 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 30 H 0.06 1.64 6.24 -2.38 -0.01 1.62 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.35 6.68 -2.39 -0.02 1.34 16 37 H 0.07 2.11 6.81 -2.39 -0.02 2.10 16 38 H 0.06 1.90 6.06 -2.39 -0.01 1.88 16 39 H 0.41 11.65 6.91 -92.70 -0.64 11.01 16 40 H 0.09 1.67 6.58 -2.39 -0.02 1.65 16 41 H 0.06 1.24 7.91 -2.39 -0.02 1.22 16 42 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.11 1.45 7.89 -2.39 -0.02 1.43 16 44 H 0.26 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 0.38 8.13 -2.39 -0.02 0.36 16 46 H 0.12 0.75 7.87 -2.39 -0.02 0.73 16 47 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 48 H 0.10 1.65 7.41 -2.39 -0.02 1.63 16 49 H 0.37 17.58 7.80 -92.71 -0.72 16.85 16 50 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -71.44 392.03 3.39 -68.06 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.40 Total: 36.97 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 7.94 Total: 7.54 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -6.13 Total: -137.99 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.44 3.39 -68.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732562438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.035 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds